esm2_t6_8m_qlora_binding_sites_v0 / conda-environment (2).yml
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name: esm2_binding_py38b
channels:
- pytorch
- nvidia
- bioconda
- anaconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- asttokens=2.0.5=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- biopython=1.79=py38h497a2fe_1
- blas=1.0=mkl
- blast=2.5.0=hc0b0e79_3
- boost=1.82.0=py38h06a4308_1
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2023.08.22=h06a4308_0
- certifi=2023.7.22=py38h06a4308_0
- cffi=1.15.1=py38h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.2=py38h06a4308_0
- cryptography=41.0.2=py38h22a60cf_0
- cuda-cudart=11.8.89=0
- cuda-cupti=11.8.87=0
- cuda-libraries=11.8.0=0
- cuda-nvrtc=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-runtime=11.8.0=0
- debugpy=1.5.1=py38h295c915_0
- decorator=5.1.1=pyhd3eb1b0_0
- entrypoints=0.4=py38h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.9.0=py38h06a4308_0
- freetype=2.12.1=h4a9f257_0
- giflib=5.2.1=h5eee18b_3
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py38heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- icu=73.1=h6a678d5_0
- idna=3.4=py38h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46305
- ipykernel=6.19.2=py38hb070fc8_0
- ipython=8.8.0=py38h06a4308_0
- jedi=0.18.1=py38h06a4308_1
- jinja2=3.1.2=py38h06a4308_0
- jpeg=9e=h5eee18b_1
- jupyter_client=7.4.8=py38h06a4308_0
- jupyter_core=5.1.1=py38h06a4308_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libboost=1.82.0=ha8e66a6_1
- libcublas=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufile=1.7.2.10=0
- libcurand=10.3.3.141=0
- libcusolver=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libdeflate=1.17=h5eee18b_0
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libnpp=11.8.0.86=0
- libnvjpeg=11.9.0.86=0
- libpng=1.6.39=h5eee18b_0
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- lightning-utilities=0.9.0=pyhd8ed1ab_0
- lz4-c=1.9.4=h6a678d5_0
- markupsafe=2.1.1=py38h7f8727e_0
- matplotlib-inline=0.1.6=py38h06a4308_0
- mkl=2023.1.0=h213fc3f_46343
- mkl-service=2.4.0=py38h5eee18b_1
- mkl_fft=1.3.6=py38h417a72b_1
- mkl_random=1.2.2=py38h417a72b_1
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py38h06a4308_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.5.6=py38h06a4308_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py38h06a4308_0
- numpy=1.24.3=py38hf6e8229_1
- numpy-base=1.24.3=py38h060ed82_1
- openh264=2.1.1=h4ff587b_0
- openssl=3.0.11=h7f8727e_2
- packaging=22.0=py38h06a4308_0
- parso=0.8.3=pyhd3eb1b0_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=9.4.0=py38h6a678d5_0
- pip=23.2.1=py38h06a4308_0
- platformdirs=2.5.2=py38h06a4308_0
- prompt-toolkit=3.0.36=py38h06a4308_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- py-boost=1.82.0=py38h3c18c91_1
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.11.2=pyhd3eb1b0_0
- pyopenssl=23.2.0=py38h06a4308_0
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.17=h955ad1f_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=2.0.1=py3.8_cuda11.8_cudnn8.7.0_0
- pytorch-cuda=11.8=h7e8668a_5
- pytorch-mutex=1.0=cuda
- pyzmq=23.2.0=py38h6a678d5_0
- readline=8.2=h5eee18b_0
- requests=2.31.0=py38h06a4308_0
- setuptools=68.0.0=py38h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.41.2=h5eee18b_0
- stack_data=0.2.0=pyhd3eb1b0_0
- sympy=1.11.1=py38h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=2.0.2=py38_cu118
- torchmetrics=1.1.2=pyhd8ed1ab_0
- torchtriton=2.0.0=py38
- torchvision=0.15.2=py38_cu118
- tornado=6.2=py38h5eee18b_0
- tqdm=4.66.1=pyhd8ed1ab_0
- traitlets=5.7.1=py38h06a4308_0
- typing_extensions=4.7.1=py38h06a4308_0
- urllib3=1.26.16=py38h06a4308_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- wheel=0.38.4=py38h06a4308_0
- xz=5.4.2=h5eee18b_0
- zeromq=4.3.4=h2531618_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- accelerate==0.22.0
- aiohttp==3.8.5
- aiosignal==1.3.1
- async-timeout==4.0.3
- attrs==23.1.0
- click==8.1.7
- datasets==2.14.5
- dill==0.3.7
- docker-pycreds==0.4.0
- frozenlist==1.4.0
- fsspec==2023.6.0
- gitdb==4.0.10
- gitpython==3.1.35
- huggingface-hub==0.17.3
- multidict==6.0.4
- multiprocess==0.70.15
- pathtools==0.1.2
- peft==0.5.0
- protobuf==4.24.3
- psutil==5.9.5
- pyarrow==13.0.0
- pyyaml==6.0.1
- regex==2023.8.8
- safetensors==0.3.3
- scikit-learn==1.3.0
- sentry-sdk==1.30.0
- setproctitle==1.3.2
- smmap==5.0.0
- threadpoolctl==3.2.0
- tokenizers==0.13.3
- transformers==4.33.1
- wandb==0.15.10
- xxhash==3.3.0
- yarl==1.9.2
prefix: /home/ubuntu/miniconda3/envs/esm2_binding_py38b
# pip install git+https://github.com/Amelie-Schreiber/transformers.git@esm_checkpointing
# pip install --upgrade git+https://github.com/huggingface/transformers.git