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{
"metric_params": {
"quality_metric_params": {
"metric_names": [
"amplitude_cutoff",
"amplitude_cv",
"amplitude_median",
"d_prime",
"drift",
"firing_range",
"firing_rate",
"isi_violation",
"isolation_distance",
"l_ratio",
"nearest_neighbor",
"num_spikes",
"presence_ratio",
"rp_violation",
"sd_ratio",
"silhouette",
"sliding_rp_violation",
"snr",
"synchrony"
],
"peak_sign": null,
"seed": null,
"qm_params": {
"presence_ratio": {
"bin_duration_s": 60,
"mean_fr_ratio_thresh": 0.0
},
"snr": {
"peak_sign": "neg",
"peak_mode": "extremum"
},
"isi_violation": {
"isi_threshold_ms": 1.5,
"min_isi_ms": 0
},
"rp_violation": {
"refractory_period_ms": 1.0,
"censored_period_ms": 0.0
},
"sliding_rp_violation": {
"min_spikes": 0,
"bin_size_ms": 0.25,
"window_size_s": 1,
"exclude_ref_period_below_ms": 0.5,
"max_ref_period_ms": 10,
"contamination_values": null
},
"synchrony": {
"synchrony_sizes": [
2,
4,
8
]
},
"firing_range": {
"bin_size_s": 5,
"percentiles": [
5,
95
]
},
"amplitude_cv": {
"average_num_spikes_per_bin": 50,
"percentiles": [
5,
95
],
"min_num_bins": 10,
"amplitude_extension": "spike_amplitudes"
},
"amplitude_cutoff": {
"peak_sign": "neg",
"num_histogram_bins": 100,
"histogram_smoothing_value": 3,
"amplitudes_bins_min_ratio": 5
},
"amplitude_median": {
"peak_sign": "neg"
},
"drift": {
"interval_s": 60,
"min_spikes_per_interval": 100,
"direction": "y",
"min_num_bins": 2
},
"nearest_neighbor": {
"max_spikes": 10000,
"n_neighbors": 5
},
"nn_isolation": {
"max_spikes": 10000,
"min_spikes": 10,
"min_fr": 0.0,
"n_neighbors": 4,
"n_components": 10,
"radius_um": 100,
"peak_sign": "neg"
},
"nn_noise_overlap": {
"max_spikes": 10000,
"min_spikes": 10,
"min_fr": 0.0,
"n_neighbors": 4,
"n_components": 10,
"radius_um": 100,
"peak_sign": "neg"
},
"silhouette": {
"method": [
"simplified"
]
}
},
"skip_pc_metrics": false
},
"template_metric_params": {
"metric_names": [
"half_width",
"num_negative_peaks",
"num_positive_peaks",
"peak_to_valley",
"peak_trough_ratio",
"recovery_slope",
"repolarization_slope"
],
"sparsity": null,
"peak_sign": "neg",
"upsampling_factor": 10,
"metrics_kwargs": {
"recovery_window_ms": 0.7,
"peak_relative_threshold": 0.2,
"peak_width_ms": 0.1,
"depth_direction": "y",
"min_channels_for_velocity": 5,
"min_r2_velocity": 0.5,
"exp_peak_function": "ptp",
"min_r2_exp_decay": 0.5,
"spread_threshold": 0.2,
"spread_smooth_um": 20,
"column_range": null
}
}
},
"requirements": {
"spikeinterface": "0.100.1",
"scikit-learn": "1.3.2"
},
"label_conversion": {
"1": "noise",
"2": "mua",
"3": "sua"
}
} |