File size: 22,829 Bytes
6370773 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 |
import sys
import sysconfig
import subprocess
import pkgutil
import types
import importlib
import inspect
import warnings
import numpy as np
import numpy
from numpy.testing import IS_WASM
import pytest
try:
import ctypes
except ImportError:
ctypes = None
def check_dir(module, module_name=None):
"""Returns a mapping of all objects with the wrong __module__ attribute."""
if module_name is None:
module_name = module.__name__
results = {}
for name in dir(module):
if name == "core":
continue
item = getattr(module, name)
if (hasattr(item, '__module__') and hasattr(item, '__name__')
and item.__module__ != module_name):
results[name] = item.__module__ + '.' + item.__name__
return results
def test_numpy_namespace():
# We override dir to not show these members
allowlist = {
'recarray': 'numpy.rec.recarray',
'show_config': 'numpy.__config__.show',
}
bad_results = check_dir(np)
# pytest gives better error messages with the builtin assert than with
# assert_equal
assert bad_results == allowlist
@pytest.mark.skipif(IS_WASM, reason="can't start subprocess")
@pytest.mark.parametrize('name', ['testing'])
def test_import_lazy_import(name):
"""Make sure we can actually use the modules we lazy load.
While not exported as part of the public API, it was accessible. With the
use of __getattr__ and __dir__, this isn't always true It can happen that
an infinite recursion may happen.
This is the only way I found that would force the failure to appear on the
badly implemented code.
We also test for the presence of the lazily imported modules in dir
"""
exe = (sys.executable, '-c', "import numpy; numpy." + name)
result = subprocess.check_output(exe)
assert not result
# Make sure they are still in the __dir__
assert name in dir(np)
def test_dir_testing():
"""Assert that output of dir has only one "testing/tester"
attribute without duplicate"""
assert len(dir(np)) == len(set(dir(np)))
def test_numpy_linalg():
bad_results = check_dir(np.linalg)
assert bad_results == {}
def test_numpy_fft():
bad_results = check_dir(np.fft)
assert bad_results == {}
@pytest.mark.skipif(ctypes is None,
reason="ctypes not available in this python")
def test_NPY_NO_EXPORT():
cdll = ctypes.CDLL(np._core._multiarray_tests.__file__)
# Make sure an arbitrary NPY_NO_EXPORT function is actually hidden
f = getattr(cdll, 'test_not_exported', None)
assert f is None, ("'test_not_exported' is mistakenly exported, "
"NPY_NO_EXPORT does not work")
# Historically NumPy has not used leading underscores for private submodules
# much. This has resulted in lots of things that look like public modules
# (i.e. things that can be imported as `import numpy.somesubmodule.somefile`),
# but were never intended to be public. The PUBLIC_MODULES list contains
# modules that are either public because they were meant to be, or because they
# contain public functions/objects that aren't present in any other namespace
# for whatever reason and therefore should be treated as public.
#
# The PRIVATE_BUT_PRESENT_MODULES list contains modules that look public (lack
# of underscores) but should not be used. For many of those modules the
# current status is fine. For others it may make sense to work on making them
# private, to clean up our public API and avoid confusion.
PUBLIC_MODULES = ['numpy.' + s for s in [
"ctypeslib",
"dtypes",
"exceptions",
"f2py",
"fft",
"lib",
"lib.array_utils",
"lib.format",
"lib.introspect",
"lib.mixins",
"lib.npyio",
"lib.recfunctions", # note: still needs cleaning, was forgotten for 2.0
"lib.scimath",
"lib.stride_tricks",
"linalg",
"ma",
"ma.extras",
"ma.mrecords",
"polynomial",
"polynomial.chebyshev",
"polynomial.hermite",
"polynomial.hermite_e",
"polynomial.laguerre",
"polynomial.legendre",
"polynomial.polynomial",
"random",
"strings",
"testing",
"testing.overrides",
"typing",
"typing.mypy_plugin",
"version",
]]
if sys.version_info < (3, 12):
PUBLIC_MODULES += [
'numpy.' + s for s in [
"distutils",
"distutils.cpuinfo",
"distutils.exec_command",
"distutils.misc_util",
"distutils.log",
"distutils.system_info",
]
]
PUBLIC_ALIASED_MODULES = [
"numpy.char",
"numpy.emath",
"numpy.rec",
]
PRIVATE_BUT_PRESENT_MODULES = ['numpy.' + s for s in [
"compat",
"compat.py3k",
"conftest",
"core",
"core.multiarray",
"core.numeric",
"core.umath",
"core.arrayprint",
"core.defchararray",
"core.einsumfunc",
"core.fromnumeric",
"core.function_base",
"core.getlimits",
"core.numerictypes",
"core.overrides",
"core.records",
"core.shape_base",
"f2py.auxfuncs",
"f2py.capi_maps",
"f2py.cb_rules",
"f2py.cfuncs",
"f2py.common_rules",
"f2py.crackfortran",
"f2py.diagnose",
"f2py.f2py2e",
"f2py.f90mod_rules",
"f2py.func2subr",
"f2py.rules",
"f2py.symbolic",
"f2py.use_rules",
"fft.helper",
"lib.user_array", # note: not in np.lib, but probably should just be deleted
"linalg.lapack_lite",
"linalg.linalg",
"ma.core",
"ma.testutils",
"ma.timer_comparison",
"matlib",
"matrixlib",
"matrixlib.defmatrix",
"polynomial.polyutils",
"random.mtrand",
"random.bit_generator",
"testing.print_coercion_tables",
]]
if sys.version_info < (3, 12):
PRIVATE_BUT_PRESENT_MODULES += [
'numpy.' + s for s in [
"distutils.armccompiler",
"distutils.fujitsuccompiler",
"distutils.ccompiler",
'distutils.ccompiler_opt',
"distutils.command",
"distutils.command.autodist",
"distutils.command.bdist_rpm",
"distutils.command.build",
"distutils.command.build_clib",
"distutils.command.build_ext",
"distutils.command.build_py",
"distutils.command.build_scripts",
"distutils.command.build_src",
"distutils.command.config",
"distutils.command.config_compiler",
"distutils.command.develop",
"distutils.command.egg_info",
"distutils.command.install",
"distutils.command.install_clib",
"distutils.command.install_data",
"distutils.command.install_headers",
"distutils.command.sdist",
"distutils.conv_template",
"distutils.core",
"distutils.extension",
"distutils.fcompiler",
"distutils.fcompiler.absoft",
"distutils.fcompiler.arm",
"distutils.fcompiler.compaq",
"distutils.fcompiler.environment",
"distutils.fcompiler.g95",
"distutils.fcompiler.gnu",
"distutils.fcompiler.hpux",
"distutils.fcompiler.ibm",
"distutils.fcompiler.intel",
"distutils.fcompiler.lahey",
"distutils.fcompiler.mips",
"distutils.fcompiler.nag",
"distutils.fcompiler.none",
"distutils.fcompiler.pathf95",
"distutils.fcompiler.pg",
"distutils.fcompiler.nv",
"distutils.fcompiler.sun",
"distutils.fcompiler.vast",
"distutils.fcompiler.fujitsu",
"distutils.from_template",
"distutils.intelccompiler",
"distutils.lib2def",
"distutils.line_endings",
"distutils.mingw32ccompiler",
"distutils.msvccompiler",
"distutils.npy_pkg_config",
"distutils.numpy_distribution",
"distutils.pathccompiler",
"distutils.unixccompiler",
]
]
def is_unexpected(name):
"""Check if this needs to be considered."""
if '._' in name or '.tests' in name or '.setup' in name:
return False
if name in PUBLIC_MODULES:
return False
if name in PUBLIC_ALIASED_MODULES:
return False
if name in PRIVATE_BUT_PRESENT_MODULES:
return False
return True
if sys.version_info < (3, 12):
SKIP_LIST = ["numpy.distutils.msvc9compiler"]
else:
SKIP_LIST = []
# suppressing warnings from deprecated modules
@pytest.mark.filterwarnings("ignore:.*np.compat.*:DeprecationWarning")
def test_all_modules_are_expected():
"""
Test that we don't add anything that looks like a new public module by
accident. Check is based on filenames.
"""
modnames = []
for _, modname, ispkg in pkgutil.walk_packages(path=np.__path__,
prefix=np.__name__ + '.',
onerror=None):
if is_unexpected(modname) and modname not in SKIP_LIST:
# We have a name that is new. If that's on purpose, add it to
# PUBLIC_MODULES. We don't expect to have to add anything to
# PRIVATE_BUT_PRESENT_MODULES. Use an underscore in the name!
modnames.append(modname)
if modnames:
raise AssertionError(f'Found unexpected modules: {modnames}')
# Stuff that clearly shouldn't be in the API and is detected by the next test
# below
SKIP_LIST_2 = [
'numpy.lib.math',
'numpy.matlib.char',
'numpy.matlib.rec',
'numpy.matlib.emath',
'numpy.matlib.exceptions',
'numpy.matlib.math',
'numpy.matlib.linalg',
'numpy.matlib.fft',
'numpy.matlib.random',
'numpy.matlib.ctypeslib',
'numpy.matlib.ma',
]
if sys.version_info < (3, 12):
SKIP_LIST_2 += [
'numpy.distutils.log.sys',
'numpy.distutils.log.logging',
'numpy.distutils.log.warnings',
]
def test_all_modules_are_expected_2():
"""
Method checking all objects. The pkgutil-based method in
`test_all_modules_are_expected` does not catch imports into a namespace,
only filenames. So this test is more thorough, and checks this like:
import .lib.scimath as emath
To check if something in a module is (effectively) public, one can check if
there's anything in that namespace that's a public function/object but is
not exposed in a higher-level namespace. For example for a `numpy.lib`
submodule::
mod = np.lib.mixins
for obj in mod.__all__:
if obj in np.__all__:
continue
elif obj in np.lib.__all__:
continue
else:
print(obj)
"""
def find_unexpected_members(mod_name):
members = []
module = importlib.import_module(mod_name)
if hasattr(module, '__all__'):
objnames = module.__all__
else:
objnames = dir(module)
for objname in objnames:
if not objname.startswith('_'):
fullobjname = mod_name + '.' + objname
if isinstance(getattr(module, objname), types.ModuleType):
if is_unexpected(fullobjname):
if fullobjname not in SKIP_LIST_2:
members.append(fullobjname)
return members
unexpected_members = find_unexpected_members("numpy")
for modname in PUBLIC_MODULES:
unexpected_members.extend(find_unexpected_members(modname))
if unexpected_members:
raise AssertionError("Found unexpected object(s) that look like "
"modules: {}".format(unexpected_members))
def test_api_importable():
"""
Check that all submodules listed higher up in this file can be imported
Note that if a PRIVATE_BUT_PRESENT_MODULES entry goes missing, it may
simply need to be removed from the list (deprecation may or may not be
needed - apply common sense).
"""
def check_importable(module_name):
try:
importlib.import_module(module_name)
except (ImportError, AttributeError):
return False
return True
module_names = []
for module_name in PUBLIC_MODULES:
if not check_importable(module_name):
module_names.append(module_name)
if module_names:
raise AssertionError("Modules in the public API that cannot be "
"imported: {}".format(module_names))
for module_name in PUBLIC_ALIASED_MODULES:
try:
eval(module_name)
except AttributeError:
module_names.append(module_name)
if module_names:
raise AssertionError("Modules in the public API that were not "
"found: {}".format(module_names))
with warnings.catch_warnings(record=True) as w:
warnings.filterwarnings('always', category=DeprecationWarning)
warnings.filterwarnings('always', category=ImportWarning)
for module_name in PRIVATE_BUT_PRESENT_MODULES:
if not check_importable(module_name):
module_names.append(module_name)
if module_names:
raise AssertionError("Modules that are not really public but looked "
"public and can not be imported: "
"{}".format(module_names))
@pytest.mark.xfail(
sysconfig.get_config_var("Py_DEBUG") not in (None, 0, "0"),
reason=(
"NumPy possibly built with `USE_DEBUG=True ./tools/travis-test.sh`, "
"which does not expose the `array_api` entry point. "
"See https://github.com/numpy/numpy/pull/19800"
),
)
def test_array_api_entry_point():
"""
Entry point for Array API implementation can be found with importlib and
returns the main numpy namespace.
"""
# For a development install that did not go through meson-python,
# the entrypoint will not have been installed. So ensure this test fails
# only if numpy is inside site-packages.
numpy_in_sitepackages = sysconfig.get_path('platlib') in np.__file__
eps = importlib.metadata.entry_points()
try:
xp_eps = eps.select(group="array_api")
except AttributeError:
# The select interface for entry_points was introduced in py3.10,
# deprecating its dict interface. We fallback to dict keys for finding
# Array API entry points so that running this test in <=3.9 will
# still work - see https://github.com/numpy/numpy/pull/19800.
xp_eps = eps.get("array_api", [])
if len(xp_eps) == 0:
if numpy_in_sitepackages:
msg = "No entry points for 'array_api' found"
raise AssertionError(msg) from None
return
try:
ep = next(ep for ep in xp_eps if ep.name == "numpy")
except StopIteration:
if numpy_in_sitepackages:
msg = "'numpy' not in array_api entry points"
raise AssertionError(msg) from None
return
if ep.value == 'numpy.array_api':
# Looks like the entrypoint for the current numpy build isn't
# installed, but an older numpy is also installed and hence the
# entrypoint is pointing to the old (no longer existing) location.
# This isn't a problem except for when running tests with `spin` or an
# in-place build.
return
xp = ep.load()
msg = (
f"numpy entry point value '{ep.value}' "
"does not point to our Array API implementation"
)
assert xp is numpy, msg
def test_main_namespace_all_dir_coherence():
"""
Checks if `dir(np)` and `np.__all__` are consistent and return
the same content, excluding exceptions and private members.
"""
def _remove_private_members(member_set):
return {m for m in member_set if not m.startswith('_')}
def _remove_exceptions(member_set):
return member_set.difference({
"bool" # included only in __dir__
})
all_members = _remove_private_members(np.__all__)
all_members = _remove_exceptions(all_members)
dir_members = _remove_private_members(np.__dir__())
dir_members = _remove_exceptions(dir_members)
assert all_members == dir_members, (
"Members that break symmetry: "
f"{all_members.symmetric_difference(dir_members)}"
)
@pytest.mark.filterwarnings(
r"ignore:numpy.core(\.\w+)? is deprecated:DeprecationWarning"
)
def test_core_shims_coherence():
"""
Check that all "semi-public" members of `numpy._core` are also accessible
from `numpy.core` shims.
"""
import numpy.core as core
for member_name in dir(np._core):
# Skip private and test members. Also if a module is aliased,
# no need to add it to np.core
if (
member_name.startswith("_")
or member_name in ["tests", "strings"]
or f"numpy.{member_name}" in PUBLIC_ALIASED_MODULES
):
continue
member = getattr(np._core, member_name)
# np.core is a shim and all submodules of np.core are shims
# but we should be able to import everything in those shims
# that are available in the "real" modules in np._core
if inspect.ismodule(member):
submodule = member
submodule_name = member_name
for submodule_member_name in dir(submodule):
# ignore dunder names
if submodule_member_name.startswith("__"):
continue
submodule_member = getattr(submodule, submodule_member_name)
core_submodule = __import__(
f"numpy.core.{submodule_name}",
fromlist=[submodule_member_name]
)
assert submodule_member is getattr(
core_submodule, submodule_member_name
)
else:
assert member is getattr(core, member_name)
def test_functions_single_location():
"""
Check that each public function is available from one location only.
Test performs BFS search traversing NumPy's public API. It flags
any function-like object that is accessible from more that one place.
"""
from typing import Any, Callable, Dict, List, Set, Tuple
from numpy._core._multiarray_umath import (
_ArrayFunctionDispatcher as dispatched_function
)
visited_modules: Set[types.ModuleType] = {np}
visited_functions: Set[Callable[..., Any]] = set()
# Functions often have `__name__` overridden, therefore we need
# to keep track of locations where functions have been found.
functions_original_paths: Dict[Callable[..., Any], str] = dict()
# Here we aggregate functions with more than one location.
# It must be empty for the test to pass.
duplicated_functions: List[Tuple] = []
modules_queue = [np]
while len(modules_queue) > 0:
module = modules_queue.pop()
for member_name in dir(module):
member = getattr(module, member_name)
# first check if we got a module
if (
inspect.ismodule(member) and # it's a module
"numpy" in member.__name__ and # inside NumPy
not member_name.startswith("_") and # not private
"numpy._core" not in member.__name__ and # outside _core
# not a legacy or testing module
member_name not in ["f2py", "ma", "testing", "tests"] and
member not in visited_modules # not visited yet
):
modules_queue.append(member)
visited_modules.add(member)
# else check if we got a function-like object
elif (
inspect.isfunction(member) or
isinstance(member, (dispatched_function, np.ufunc))
):
if member in visited_functions:
# skip main namespace functions with aliases
if (
member.__name__ in [
"absolute", # np.abs
"arccos", # np.acos
"arccosh", # np.acosh
"arcsin", # np.asin
"arcsinh", # np.asinh
"arctan", # np.atan
"arctan2", # np.atan2
"arctanh", # np.atanh
"left_shift", # np.bitwise_left_shift
"right_shift", # np.bitwise_right_shift
"conjugate", # np.conj
"invert", # np.bitwise_not & np.bitwise_invert
"remainder", # np.mod
"divide", # np.true_divide
"concatenate", # np.concat
"power", # np.pow
"transpose", # np.permute_dims
] and
module.__name__ == "numpy"
):
continue
# skip trimcoef from numpy.polynomial as it is
# duplicated by design.
if (
member.__name__ == "trimcoef" and
module.__name__.startswith("numpy.polynomial")
):
continue
# skip ufuncs that are exported in np.strings as well
if member.__name__ in (
"add",
"equal",
"not_equal",
"greater",
"greater_equal",
"less",
"less_equal",
) and module.__name__ == "numpy.strings":
continue
# numpy.char reexports all numpy.strings functions for
# backwards-compatibility
if module.__name__ == "numpy.char":
continue
# function is present in more than one location!
duplicated_functions.append(
(member.__name__,
module.__name__,
functions_original_paths[member])
)
else:
visited_functions.add(member)
functions_original_paths[member] = module.__name__
del visited_functions, visited_modules, functions_original_paths
assert len(duplicated_functions) == 0, duplicated_functions
|