Push distilbert-base-uncased trained on biored-original_splits.pt

README.md

@@ -0,0 +1,84 @@
+---
+language:
+- en
+license: mit
+base_model: distilbert-base-uncased
+tags:
+- low-resource NER
+- token_classification
+- biomedicine
+- medical NER
+- generated_from_trainer
+datasets:
+- medicine
+metrics:
+- accuracy
+- precision
+- recall
+- f1
+model-index:
+- name: Dagobert42/distilbert-base-uncased-biored-finetuned
+  results: []
+---
+
+<!-- This model card has been generated automatically according to the information the Trainer had access to. You
+should probably proofread and complete it, then remove this comment. -->
+
+# Dagobert42/distilbert-base-uncased-biored-finetuned
+
+This model is a fine-tuned version of [distilbert-base-uncased](https://huggingface.co/distilbert-base-uncased) on the bigbio/biored dataset.
+It achieves the following results on the evaluation set:
+- Loss: 0.6976
+- Accuracy: 0.7703
+- Precision: 0.5335
+- Recall: 0.424
+- F1: 0.4652
+- Weighted F1: 0.7512
+
+## Model description
+
+More information needed
+
+## Intended uses & limitations
+
+More information needed
+
+## Training and evaluation data
+
+More information needed
+
+## Training procedure
+
+### Training hyperparameters
+
+The following hyperparameters were used during training:
+- learning_rate: 2e-05
+- train_batch_size: 8
+- eval_batch_size: 8
+- seed: 42
+- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
+- lr_scheduler_type: linear
+- num_epochs: 50
+
+### Training results
+
+| Training Loss | Epoch | Step | Validation Loss | Accuracy | Precision | Recall | F1     | Weighted F1 |
+|:-------------:|:-----:|:----:|:---------------:|:--------:|:---------:|:------:|:------:|:-----------:|
+| No log        | 1.0   | 25   | 0.9181          | 0.7144   | 0.4183    | 0.1593 | 0.151  | 0.6108      |
+| No log        | 2.0   | 50   | 0.8580          | 0.7283   | 0.5273    | 0.2252 | 0.2508 | 0.6404      |
+| No log        | 3.0   | 75   | 0.8232          | 0.7369   | 0.5603    | 0.2769 | 0.3173 | 0.6638      |
+| No log        | 4.0   | 100  | 0.7814          | 0.7476   | 0.5184    | 0.3618 | 0.4085 | 0.7031      |
+| No log        | 5.0   | 125  | 0.7691          | 0.7507   | 0.5306    | 0.3929 | 0.4283 | 0.7173      |
+| No log        | 6.0   | 150  | 0.7492          | 0.7607   | 0.5494    | 0.3919 | 0.4396 | 0.7244      |
+| No log        | 7.0   | 175  | 0.7616          | 0.7622   | 0.5553    | 0.4048 | 0.4481 | 0.728       |
+| No log        | 8.0   | 200  | 0.7256          | 0.7657   | 0.5437    | 0.4306 | 0.4717 | 0.7426      |
+| No log        | 9.0   | 225  | 0.7413          | 0.7684   | 0.5565    | 0.4315 | 0.4739 | 0.7422      |
+| No log        | 10.0  | 250  | 0.7497          | 0.7721   | 0.5606    | 0.4364 | 0.4789 | 0.7446      |
+
+
+### Framework versions
+
+- Transformers 4.35.2
+- Pytorch 2.0.1+cu117
+- Datasets 2.12.0
+- Tokenizers 0.15.0

config.json

@@ -0,0 +1,42 @@
+{
+  "_name_or_path": "distilbert-base-uncased",
+  "activation": "gelu",
+  "architectures": [
+    "DistilBertForTokenClassification"
+  ],
+  "attention_dropout": 0.1,
+  "dim": 768,
+  "dropout": 0.1,
+  "hidden_dim": 3072,
+  "id2label": {
+    "0": "null",
+    "1": "GeneOrGeneProduct",
+    "2": "DiseaseOrPhenotypicFeature",
+    "3": "ChemicalEntity",
+    "4": "OrganismTaxon",
+    "5": "SequenceVariant",
+    "6": "CellLine"
+  },
+  "initializer_range": 0.02,
+  "label2id": {
+    "CellLine": 6,
+    "ChemicalEntity": 3,
+    "DiseaseOrPhenotypicFeature": 2,
+    "GeneOrGeneProduct": 1,
+    "OrganismTaxon": 4,
+    "SequenceVariant": 5,
+    "null": 0
+  },
+  "max_position_embeddings": 512,
+  "model_type": "distilbert",
+  "n_heads": 12,
+  "n_layers": 6,
+  "pad_token_id": 0,
+  "qa_dropout": 0.1,
+  "seq_classif_dropout": 0.2,
+  "sinusoidal_pos_embds": false,
+  "tie_weights_": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.35.2",
+  "vocab_size": 30522
+}

model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a6b77f92470c32771073dc6fedf9dbaacabb338a841291109a831d0eaffcb1d5
+size 265485396

special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tokenizer_config.json

@@ -0,0 +1,56 @@
+{
+  "add_prefix_space": true,
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "100": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "101": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "102": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "103": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_lower_case": true,
+  "mask_token": "[MASK]",
+  "model_max_length": 512,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "DistilBertTokenizer",
+  "unk_token": "[UNK]"
+}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f1eac4aea06037b9c3183adcbf333a38e173e27a040d33ef7a4a7a2239a5e1a4
+size 4219