GENERanno-prokaryote-0.5b-base / modeling_generanno.py
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# coding=utf-8
# Copyright 2022 EleutherAI and the HuggingFace Inc. team. All rights reserved.
#
# This code is based on EleutherAI's GPT-NeoX library and the GPT-NeoX
# and OPT implementations in this library. It has been modified from its
# original forms to accommodate minor architectural differences compared
# to GPT-NeoX and OPT used by the Meta AI team that trained the model.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
from typing import Optional, Tuple, Union, Any
import torch
import torch.nn.functional as F
import torch.utils.checkpoint
from torch import nn, Tensor
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from transformers.activations import ACT2FN
from transformers.modeling_attn_mask_utils import (
_prepare_4d_attention_mask_for_sdpa,
_prepare_4d_attention_mask,
)
from transformers.modeling_outputs import (
TokenClassifierOutput,
BaseModelOutput,
MaskedLMOutput,
SequenceClassifierOutput,
)
from transformers.modeling_rope_utils import ROPE_INIT_FUNCTIONS
from transformers.modeling_utils import PreTrainedModel
from transformers.pytorch_utils import ALL_LAYERNORM_LAYERS
from transformers.utils import (
logging,
)
from .configuration_generanno import GenerannoConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "GenerannoConfig"
class GenerannoRMSNorm(nn.Module):
def __init__(self, hidden_size, eps=1e-6):
"""
GenerannoRMSNorm is equivalent to T5LayerNorm
"""
super().__init__()
self.weight = nn.Parameter(torch.ones(hidden_size))
self.variance_epsilon = eps
def forward(self, hidden_states):
input_dtype = hidden_states.dtype
hidden_states = hidden_states.to(torch.float32)
variance = hidden_states.pow(2).mean(-1, keepdim=True)
hidden_states = hidden_states * torch.rsqrt(variance + self.variance_epsilon)
return self.weight * hidden_states.to(input_dtype)
def extra_repr(self):
return f"{tuple(self.weight.shape)}, eps={self.variance_epsilon}"
ALL_LAYERNORM_LAYERS.append(GenerannoRMSNorm)
class GenerannoRotaryEmbedding(nn.Module):
def __init__(
self,
dim=None,
max_position_embeddings=2048,
base=10000,
device=None,
scaling_factor=1.0,
rope_type="default",
config: Optional[GenerannoConfig] = None,
):
super().__init__()
# TODO (joao): remove the `if` below, only used for BC
self.rope_kwargs = {}
if config is None:
logger.warning_once(
"`GenerannoRotaryEmbedding` can now be fully parameterized by passing the model config through the "
"`config` argument. All other arguments will be removed in v4.45"
)
self.rope_kwargs = {
"rope_type": rope_type,
"factor": scaling_factor,
"dim": dim,
"base": base,
"max_position_embeddings": max_position_embeddings,
}
self.rope_type = rope_type
self.max_seq_len_cached = max_position_embeddings
self.original_max_seq_len = max_position_embeddings
else:
# BC: "rope_type" was originally "type"
if config.rope_scaling is not None:
self.rope_type = config.rope_scaling.get(
"rope_type", config.rope_scaling.get("type")
)
else:
self.rope_type = "default"
self.max_seq_len_cached = config.max_position_embeddings
self.original_max_seq_len = config.max_position_embeddings
self.config = config
self.rope_init_fn = ROPE_INIT_FUNCTIONS[self.rope_type]
inv_freq, self.attention_scaling = self.rope_init_fn(
self.config, device, **self.rope_kwargs
)
self.register_buffer("inv_freq", inv_freq, persistent=False)
self.original_inv_freq = self.inv_freq
def _dynamic_frequency_update(self, position_ids, device):
"""
dynamic RoPE layers should recompute `inv_freq` in the following situations:
1 - growing beyond the cached sequence length (allow scaling)
2 - the current sequence length is in the original scale (avoid losing precision with small sequences)
"""
seq_len = torch.max(position_ids) + 1
if seq_len > self.max_seq_len_cached: # growth
inv_freq, self.attention_scaling = self.rope_init_fn(
self.config, device, seq_len=seq_len, **self.rope_kwargs
)
self.register_buffer(
"inv_freq", inv_freq, persistent=False
) # TODO joao: may break with compilation
self.max_seq_len_cached = seq_len
if (
seq_len < self.original_max_seq_len
and self.max_seq_len_cached > self.original_max_seq_len
): # reset
self.register_buffer("inv_freq", self.original_inv_freq, persistent=False)
self.max_seq_len_cached = self.original_max_seq_len
@torch.no_grad()
def forward(self, x, position_ids):
if "dynamic" in self.rope_type:
self._dynamic_frequency_update(position_ids, device=x.device)
# Core RoPE block
inv_freq_expanded = (
self.inv_freq[None, :, None].float().expand(position_ids.shape[0], -1, 1)
)
position_ids_expanded = position_ids[:, None, :].float()
# Force float32 (see https://github.com/huggingface/transformers/pull/29285)
device_type = x.device.type
device_type = (
device_type
if isinstance(device_type, str) and device_type != "mps"
else "cpu"
)
with torch.autocast(device_type=device_type, enabled=False):
freqs = (
inv_freq_expanded.float() @ position_ids_expanded.float()
).transpose(1, 2)
emb = torch.cat((freqs, freqs), dim=-1)
cos = emb.cos()
sin = emb.sin()
# Advanced RoPE types (e.g. yarn) apply a post-processing scaling factor, equivalent to scaling attention
cos = cos * self.attention_scaling
sin = sin * self.attention_scaling
return cos.to(dtype=x.dtype), sin.to(dtype=x.dtype)
class GenerannoLinearScalingRotaryEmbedding(GenerannoRotaryEmbedding):
"""GenerannoRotaryEmbedding extended with linear scaling. Credits to the Reddit user /u/kaiokendev"""
def __init__(self, *args, **kwargs):
logger.warning_once(
"`GenerannoLinearScalingRotaryEmbedding` is deprecated an will be removed in v4.45. Please use "
"`GenerannoRotaryEmbedding`, which now also does linear scaling (simply pass the model config to __init__)."
)
kwargs["rope_type"] = "linear"
super().__init__(*args, **kwargs)
class GenerannoDynamicNTKScalingRotaryEmbedding(GenerannoRotaryEmbedding):
"""GenerannoRotaryEmbedding extended with Dynamic NTK scaling. Credits to the Reddit users /u/bloc97 and /u/emozilla"""
def __init__(self, *args, **kwargs):
logger.warning_once(
"`GenerannoDynamicNTKScalingRotaryEmbedding` is deprecated an will be removed in v4.45. Please use "
"`GenerannoRotaryEmbedding`, which now also does dynamic ntk scaling (simply pass the model config to "
"__init__)."
)
kwargs["rope_type"] = "dynamic"
super().__init__(*args, **kwargs)
def rotate_half(x):
"""Rotates half the hidden dims of the input."""
x1 = x[..., : x.shape[-1] // 2]
x2 = x[..., x.shape[-1] // 2 :]
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(q, k, cos, sin, position_ids=None, unsqueeze_dim=1):
"""Applies Rotary Position Embedding to the query and key tensors.
Args:
q (`torch.Tensor`): The query tensor.
k (`torch.Tensor`): The key tensor.
cos (`torch.Tensor`): The cosine part of the rotary embedding.
sin (`torch.Tensor`): The sine part of the rotary embedding.
position_ids (`torch.Tensor`, *optional*):
Deprecated and unused.
unsqueeze_dim (`int`, *optional*, defaults to 1):
The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
Returns:
`tuple(torch.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
"""
cos = cos.unsqueeze(unsqueeze_dim)
sin = sin.unsqueeze(unsqueeze_dim)
q_embed = (q * cos) + (rotate_half(q) * sin)
k_embed = (k * cos) + (rotate_half(k) * sin)
return q_embed, k_embed
class GenerannoMLP(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.hidden_size = config.hidden_size
self.intermediate_size = config.intermediate_size
self.gate_proj = nn.Linear(
self.hidden_size, self.intermediate_size, bias=config.mlp_bias
)
self.up_proj = nn.Linear(
self.hidden_size, self.intermediate_size, bias=config.mlp_bias
)
self.down_proj = nn.Linear(
self.intermediate_size, self.hidden_size, bias=config.mlp_bias
)
self.act_fn = ACT2FN[config.hidden_act]
def forward(self, x):
if self.config.pretraining_tp > 1:
slice = self.intermediate_size // self.config.pretraining_tp
gate_proj_slices = self.gate_proj.weight.split(slice, dim=0)
up_proj_slices = self.up_proj.weight.split(slice, dim=0)
down_proj_slices = self.down_proj.weight.split(slice, dim=1)
gate_proj = torch.cat(
[
F.linear(x, gate_proj_slices[i])
for i in range(self.config.pretraining_tp)
],
dim=-1,
)
up_proj = torch.cat(
[
F.linear(x, up_proj_slices[i])
for i in range(self.config.pretraining_tp)
],
dim=-1,
)
intermediate_states = (self.act_fn(gate_proj) * up_proj).split(slice, dim=2)
down_proj = [
F.linear(intermediate_states[i], down_proj_slices[i])
for i in range(self.config.pretraining_tp)
]
down_proj = sum(down_proj)
else:
down_proj = self.down_proj(self.act_fn(self.gate_proj(x)) * self.up_proj(x))
return down_proj
def repeat_kv(hidden_states: torch.Tensor, n_rep: int) -> torch.Tensor:
"""
This is the equivalent of torch.repeat_interleave(x, dim=1, repeats=n_rep). The hidden states go from (batch,
num_key_value_heads, seqlen, head_dim) to (batch, num_attention_heads, seqlen, head_dim)
"""
batch, num_key_value_heads, slen, head_dim = hidden_states.shape
if n_rep == 1:
return hidden_states
hidden_states = hidden_states[:, :, None, :, :].expand(
batch, num_key_value_heads, n_rep, slen, head_dim
)
return hidden_states.reshape(batch, num_key_value_heads * n_rep, slen, head_dim)
class GenerannoAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(self, config: GenerannoConfig, layer_idx: Optional[int] = None):
super().__init__()
self.config = config
self.layer_idx = layer_idx
if layer_idx is None:
logger.warning_once(
f"Instantiating {self.__class__.__name__} without passing a `layer_idx` is not recommended and will "
"lead to errors during the forward call if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
self.attention_dropout = config.attention_dropout
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.hidden_size // self.num_heads
self.num_key_value_heads = config.num_key_value_heads
self.num_key_value_groups = self.num_heads // self.num_key_value_heads
self.max_position_embeddings = config.max_position_embeddings
self.rope_theta = config.rope_theta
if (self.head_dim * self.num_heads) != self.hidden_size:
raise ValueError(
f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
f" and `num_heads`: {self.num_heads})."
)
self.q_proj = nn.Linear(
self.hidden_size, self.num_heads * self.head_dim, bias=config.attention_bias
)
self.k_proj = nn.Linear(
self.hidden_size,
self.num_key_value_heads * self.head_dim,
bias=config.attention_bias,
)
self.v_proj = nn.Linear(
self.hidden_size,
self.num_key_value_heads * self.head_dim,
bias=config.attention_bias,
)
self.o_proj = nn.Linear(
self.hidden_size, self.hidden_size, bias=config.attention_bias
)
# TODO (joao): remove in v4.45 (RoPE is computed in the model, not in the encoder layers)
self.rotary_emb = GenerannoRotaryEmbedding(config=self.config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
output_attentions: bool = False,
position_embeddings: Optional[
Tuple[torch.Tensor, torch.Tensor]
] = None, # will become mandatory in v4.45
**kwargs,
) -> Tuple[torch.Tensor, Optional[torch.Tensor]]:
bsz, q_len, _ = hidden_states.size()
if self.config.pretraining_tp > 1:
key_value_slicing = (
self.num_key_value_heads * self.head_dim
) // self.config.pretraining_tp
query_slices = self.q_proj.weight.split(
(self.num_heads * self.head_dim) // self.config.pretraining_tp, dim=0
)
key_slices = self.k_proj.weight.split(key_value_slicing, dim=0)
value_slices = self.v_proj.weight.split(key_value_slicing, dim=0)
query_states = [
F.linear(hidden_states, query_slices[i])
for i in range(self.config.pretraining_tp)
]
query_states = torch.cat(query_states, dim=-1)
key_states = [
F.linear(hidden_states, key_slices[i])
for i in range(self.config.pretraining_tp)
]
key_states = torch.cat(key_states, dim=-1)
value_states = [
F.linear(hidden_states, value_slices[i])
for i in range(self.config.pretraining_tp)
]
value_states = torch.cat(value_states, dim=-1)
else:
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(
bsz, q_len, self.num_heads, self.head_dim
).transpose(1, 2)
key_states = key_states.view(
bsz, q_len, self.num_key_value_heads, self.head_dim
).transpose(1, 2)
value_states = value_states.view(
bsz, q_len, self.num_key_value_heads, self.head_dim
).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.45 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(
query_states, key_states, cos, sin
)
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
attn_weights = torch.matmul(
query_states, key_states.transpose(2, 3)
) / math.sqrt(self.head_dim)
if attention_mask is not None:
attn_weights = attn_weights + attention_mask
# upcast attention to fp32
attn_weights = nn.functional.softmax(
attn_weights, dim=-1, dtype=torch.float32
).to(query_states.dtype)
attn_weights = nn.functional.dropout(
attn_weights, p=self.attention_dropout, training=self.training
)
attn_output = torch.matmul(attn_weights, value_states)
if attn_output.size() != (bsz, self.num_heads, q_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, q_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(bsz, q_len, -1)
if self.config.pretraining_tp > 1:
attn_output = attn_output.split(
self.hidden_size // self.config.pretraining_tp, dim=2
)
o_proj_slices = self.o_proj.weight.split(
self.hidden_size // self.config.pretraining_tp, dim=1
)
attn_output = sum(
[
F.linear(attn_output[i], o_proj_slices[i])
for i in range(self.config.pretraining_tp)
]
)
else:
attn_output = self.o_proj(attn_output)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights
class GenerannoSdpaAttention(GenerannoAttention):
"""
Generanno attention module using torch.nn.functional.scaled_dot_product_attention. This module inherits from
`GenerannoAttention` as the weights of the module stays untouched. The only changes are on the forward pass to adapt to
SDPA API.
"""
# Adapted from GenerannoAttention.forward
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
output_attentions: bool = False,
position_embeddings: Optional[
Tuple[torch.Tensor, torch.Tensor]
] = None, # will become mandatory in v4.45
**kwargs,
) -> Tuple[torch.Tensor, Optional[torch.Tensor]]:
if output_attentions:
# TODO: Improve this warning with e.g. `model.config.attn_implementation = "manual"` once this is implemented.
logger.warning_once(
"GenerannoModel is using GenerannoSdpaAttention, but `torch.nn.functional.scaled_dot_product_attention` does not support `output_attentions=True`. Falling back to the manual attention implementation, "
'but specifying the manual implementation will be required from Transformers version v5.0.0 onwards. This warning can be removed using the argument `attn_implementation="eager"` when loading the model.'
)
return super().forward(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
position_embeddings=position_embeddings,
)
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(
bsz, q_len, self.num_heads, self.head_dim
).transpose(1, 2)
key_states = key_states.view(
bsz, q_len, self.num_key_value_heads, self.head_dim
).transpose(1, 2)
value_states = value_states.view(
bsz, q_len, self.num_key_value_heads, self.head_dim
).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.45 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(
query_states, key_states, cos, sin
)
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
# SDPA with memory-efficient backend is currently (torch==2.1.2) bugged with non-contiguous inputs with custom attn_mask,
# Reference: https://github.com/pytorch/pytorch/issues/112577.
if query_states.device.type == "cuda" and attention_mask is not None:
query_states = query_states.contiguous()
key_states = key_states.contiguous()
value_states = value_states.contiguous()
# We dispatch to SDPA's Flash Attention or Efficient kernels via this `is_causal` if statement instead of an inline conditional assignment
# in SDPA to support both torch.compile's dynamic shapes and full graph options. An inline conditional prevents dynamic shapes from compiling.
attn_output = torch.nn.functional.scaled_dot_product_attention(
query_states,
key_states,
value_states,
attn_mask=attention_mask,
dropout_p=self.attention_dropout if self.training else 0.0,
is_causal=False,
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.view(bsz, q_len, -1)
attn_output = self.o_proj(attn_output)
return attn_output, None
GENERANNO_ATTENTION_CLASSES = {
"eager": GenerannoAttention,
"sdpa": GenerannoSdpaAttention,
}
class GenerannoEncoderLayer(nn.Module):
def __init__(self, config: GenerannoConfig, layer_idx: int):
super().__init__()
self.hidden_size = config.hidden_size
self.self_attn = GENERANNO_ATTENTION_CLASSES[config._attn_implementation](
config=config, layer_idx=layer_idx
)
self.mlp = GenerannoMLP(config)
self.input_layernorm = GenerannoRMSNorm(
config.hidden_size, eps=config.rms_norm_eps
)
self.post_attention_layernorm = GenerannoRMSNorm(
config.hidden_size, eps=config.rms_norm_eps
)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = False,
position_embeddings: Optional[
Tuple[torch.Tensor, torch.Tensor]
] = None, # will become mandatory in v4.45
**kwargs,
) -> tuple[Tensor | Any]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`, *optional*):
attention mask of size `(batch_size, sequence_length)` if flash attention is used or `(batch_size, 1,
query_sequence_length, key_sequence_length)` if default attention is used.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
position_embeddings (`Tuple[torch.FloatTensor, torch.FloatTensor]`, *optional*):
Tuple containing the cosine and sine positional embeddings of shape `(batch_size, seq_len, head_dim)`,
with `head_dim` being the embedding dimension of each attention head.
kwargs (`dict`, *optional*):
Arbitrary kwargs to be ignored, used for FSDP and other methods that injects code
into the model
"""
residual = hidden_states
hidden_states = self.input_layernorm(hidden_states)
# Self Attention
hidden_states, self_attn_weights = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
position_embeddings=position_embeddings,
**kwargs,
)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.post_attention_layernorm(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights,)
return outputs
class GenerannoPreTrainedModel(PreTrainedModel):
config_class = GenerannoConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
_no_split_modules = ["GenerannoEncoderLayer"]
_supports_flash_attn_2 = False # TODO
_supports_sdpa = True
def _init_weights(self, module):
std = self.config.initializer_range
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
class GenerannoModel(GenerannoPreTrainedModel):
"""
Transformer encoder consisting of *config.num_hidden_layers* layers. Each layer is a [`GenerannoEncoderLayer`]
Args:
config: GenerannoConfig
"""
def __init__(self, config: GenerannoConfig):
super().__init__(config)
self.padding_idx = config.pad_token_id
self.vocab_size = config.vocab_size
self.embed_tokens = nn.Embedding(
config.vocab_size, config.hidden_size, self.padding_idx
)
self.layers = nn.ModuleList(
[
GenerannoEncoderLayer(config, layer_idx)
for layer_idx in range(config.num_hidden_layers)
]
)
self.norm = GenerannoRMSNorm(config.hidden_size, eps=config.rms_norm_eps)
self.rotary_emb = GenerannoRotaryEmbedding(config=config)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> tuple[tuple, ...] | BaseModelOutput:
output_attentions = (
output_attentions
if output_attentions is not None
else self.config.output_attentions
)
output_hidden_states = (
output_hidden_states
if output_hidden_states is not None
else self.config.output_hidden_states
)
return_dict = (
return_dict if return_dict is not None else self.config.use_return_dict
)
if (input_ids is None) ^ (inputs_embeds is not None):
raise ValueError(
"You cannot specify both input_ids and inputs_embeds at the same time, and must specify either one"
)
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
if position_ids is None:
position_ids = torch.arange(
0, inputs_embeds.shape[1], device=inputs_embeds.device
).unsqueeze(0)
if attention_mask is None:
attention_mask = torch.ones(
(inputs_embeds.shape[0], inputs_embeds.shape[1]),
device=inputs_embeds.device,
)
attention_mask_converter = (
_prepare_4d_attention_mask_for_sdpa
if self.config._attn_implementation == "sdpa"
else _prepare_4d_attention_mask
)
attention_mask = attention_mask_converter(
attention_mask, inputs_embeds.dtype, tgt_len=inputs_embeds.shape[1]
)
hidden_states = inputs_embeds
# create position embeddings to be shared across the encoder layers
position_embeddings = self.rotary_emb(hidden_states, position_ids)
# encoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
for encoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
encoder_layer.__call__,
hidden_states,
attention_mask,
position_ids,
output_attentions,
position_embeddings,
)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
position_embeddings=position_embeddings,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attns += (layer_outputs[1],)
hidden_states = self.norm(hidden_states)
# add hidden states from the last encoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
if not return_dict:
return tuple(
v
for v in [hidden_states, all_hidden_states, all_self_attns]
if v is not None
)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
class GenerannoForMaskedLM(GenerannoPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
self.model = GenerannoModel(config)
self.vocab_size = config.vocab_size
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.init_weights()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def set_encoder(self, encoder):
self.model = encoder
def get_encoder(self):
return self.model
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, *optional*, defaults to `{}`):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = (
return_dict if return_dict is not None else self.config.use_return_dict
)
outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
if self.config.pretraining_tp > 1:
lm_head_slices = self.lm_head.weight.split(
self.vocab_size // self.config.pretraining_tp, dim=0
)
logits = [
F.linear(hidden_states, lm_head_slices[i])
for i in range(self.config.pretraining_tp)
]
logits = torch.cat(logits, dim=-1)
else:
logits = self.lm_head(hidden_states)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(logits.device)
masked_lm_loss = loss_fct(
logits.view(-1, self.config.vocab_size).float(), labels.view(-1)
)
if not return_dict:
output = (logits,) + outputs[2:]
return (
((masked_lm_loss,) + output) if masked_lm_loss is not None else output
)
return MaskedLMOutput(
loss=masked_lm_loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class GenerannoForTokenClassification(GenerannoPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.model = GenerannoModel(config)
self.feature_layer = getattr(config, "feature_layer", -1)
self.score = nn.Linear(config.hidden_size, self.num_labels, bias=False)
if getattr(config, "use_mlp_classifier", False):
self.score = nn.Sequential(
nn.Linear(config.hidden_size, config.hidden_size),
nn.GELU(),
nn.Dropout(0.1),
nn.Linear(config.hidden_size, self.num_labels, bias=False),
)
self.label_weights = (
torch.tensor(config.label_weights)
if hasattr(config, "label_weights")
else None
)
self.init_weights()
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = (
return_dict if return_dict is not None else self.config.use_return_dict
)
output_hidden_states = True
outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs["hidden_states"][
self.feature_layer if hasattr(self, "feature_layer") else -1
]
logits = self.score(hidden_states)
loss = None
if labels is not None:
if self.label_weights is not None:
self.label_weights = self.label_weights.to(
device=logits.device, dtype=logits.dtype
)
loss_fct = CrossEntropyLoss(weight=self.label_weights)
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,)
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(loss=loss, logits=logits)
class GenerannoForSequenceClassification(GenerannoPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.model = GenerannoModel(config)
self.feature_layer = getattr(config, "feature_layer", -1)
self.score = nn.Linear(config.hidden_size, self.num_labels, bias=False)
if getattr(config, "use_mlp_classifier", False):
self.score = nn.Sequential(
nn.Linear(config.hidden_size, config.hidden_size),
nn.GELU(),
nn.Dropout(0.1),
nn.Linear(config.hidden_size, self.num_labels, bias=False),
)
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = (
return_dict if return_dict is not None else self.config.use_return_dict
)
output_hidden_states = True
outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs["hidden_states"][
self.feature_layer if hasattr(self, "feature_layer") else -1
]
pooled_hidden_states = hidden_states[:, 0]
logits = self.score(pooled_hidden_states)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (
labels.dtype == torch.long or labels.dtype == torch.int
):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,)
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(loss=loss, logits=logits)