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Rename 2023-04-07T11-47-13-project.yaml to config.yaml

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Files changed (2) hide show
  1. 2023-04-07T11-47-13-project.yaml +0 -39
  2. config.yaml +25 -0
2023-04-07T11-47-13-project.yaml DELETED
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- model:
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- learning_rate: 0.0003
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- target: celle_main.CELLE_trainer
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- params:
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- ckpt_path: logs/2023-03-02T14-28-43_HPA_celle_ESM2_640/checkpoints/epoch=000013.ckpt
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- condition_model_path: logs/2022-11-07T17-17-51_OpenCell_nucleus_vqgan_finetune/checkpoints/epoch=000468.ckpt
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- condition_config_path: logs/2022-11-07T17-17-51_OpenCell_nucleus_vqgan_finetune/configs/2023-02-23T19-14-01-project.yaml
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- vqgan_model_path: logs/2023-02-13T11-37-10_OpenCell_threshold_vqgan_finetune/checkpoints/last.ckpt
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- vqgan_config_path: logs/2023-02-13T11-37-10_OpenCell_threshold_vqgan_finetune/configs/2023-02-13T11-37-10-project.yaml
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- image_key: threshold
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- num_images: 2
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- dim: 640
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- num_text_tokens: 33
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- text_seq_len: 1000
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- depth: 55
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- heads: 16
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- dim_head: 64
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- attn_dropout: 0.1
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- ff_dropout: 0.1
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- attn_types: full
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- rotary_emb: true
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- fixed_embedding: true
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- monitor: val/loss_epoch
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- text_embedding: esm2
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- loss_img_weight: 1
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- loss_cond_weight: 1
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- data:
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- target: celle_main.CellDataModule
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- params:
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- data_csv: /home/emaad/CELL-E_2/data/OpenCell/train_test_split_HPA_50.csv
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- dataset: OpenCell
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- sequence_mode: embedding
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- vocab: esm2
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- threshold: median
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- text_seq_len: 1000
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- crop_size: 256
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- resize: 600
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- batch_size: 1
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- num_workers: 8
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
config.yaml ADDED
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+ model:
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+ learning_rate: 0.0003
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+ target: celle_main.CELLE_trainer
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+ params:
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+ ckpt_path: model.ckpt
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+ condition_model_path:
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+ condition_config_path: nucleus_vqgan.yaml
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+ vqgan_model_path:
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+ vqgan_config_path: threshold_vqgan.yaml
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+ image_key: threshold
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+ num_images: 2
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+ dim: 640
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+ num_text_tokens: 33
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+ text_seq_len: 1000
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+ depth: 55
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+ heads: 16
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+ dim_head: 64
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+ attn_dropout: 0.1
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+ ff_dropout: 0.1
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+ attn_types: full
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+ rotary_emb: true
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+ fixed_embedding: true
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+ text_embedding: esm2
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+ loss_img_weight: 1
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+ loss_cond_weight: 1