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{
"_name_or_path": "michiyasunaga/BioLinkBERT-large",
"architectures": [
"BioNExtTaggerModel"
],
"args_random_seed": 42,
"attention_probs_dropout_prob": 0.1,
"augmentation": "unk",
"auto_map": {
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"AutoModel": "modeling_bionexttagger.BioNExtTaggerModel"
},
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"context_size": 2,
"crf_reduction": "mean",
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"gradient_checkpointing": false,
"hidden_act": "gelu",
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"hidden_size": 1024,
"id2label": {
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"1": "B-GeneOrGeneProduct",
"2": "I-GeneOrGeneProduct",
"3": "B-DiseaseOrPhenotypicFeature",
"4": "I-DiseaseOrPhenotypicFeature",
"5": "B-ChemicalEntity",
"6": "I-ChemicalEntity",
"7": "B-SequenceVariant",
"8": "I-SequenceVariant",
"9": "B-OrganismTaxon",
"10": "I-OrganismTaxon",
"11": "B-CellLine",
"12": "I-CellLine"
},
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"intermediate_size": 4096,
"label2id": {
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"B-ChemicalEntity": 5,
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"B-GeneOrGeneProduct": 1,
"B-OrganismTaxon": 9,
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"I-OrganismTaxon": 10,
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},
"layer_norm_eps": 1e-12,
"max_position_embeddings": 512,
"model_type": "crf-tagger",
"model_type_arch": "dense",
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"num_hidden_layers": 24,
"p_augmentation": 0.5,
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"percentage_tags": 0.75,
"position_embedding_type": "absolute",
"torch_dtype": "float32",
"transformers_version": "4.37.2",
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"use_cache": true,
"version": "0.1.2",
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}
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