from typing import Callable, List, Optional, Tuple, Union import numpy as np import torch import torch.utils.checkpoint from torch import nn from torch.nn import CrossEntropyLoss from transformers.activations import ACT2FN from transformers.generation.configuration_utils import GenerationConfig from transformers.generation.logits_process import LogitsProcessorList from transformers.generation.stopping_criteria import StoppingCriteriaList from transformers.generation.streamers import BaseStreamer from transformers.generation.utils import GenerateOutput from transformers.modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast from transformers.modeling_utils import PreTrainedModel from transformers.utils import logging from transformers.utils.model_parallel_utils import assert_device_map, get_device_map from .configuration_progen import ProGenConfig logger = logging.get_logger(__name__) from .structure import StructureTransformer def fixed_pos_embedding(x, seq_dim=1, seq_len=None): dim = x.shape[-1] if seq_len is None: seq_len = x.shape[seq_dim] inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2) / dim)) sinusoid_inp = torch.einsum("i , j -> i j", torch.arange(seq_len), inv_freq).to(x.device).float() return torch.sin(sinusoid_inp), torch.cos(sinusoid_inp) def rotate_every_two(x): x1 = x[:, :, :, ::2] x2 = x[:, :, :, 1::2] x = torch.stack((-x2, x1), axis=-1) return x.flatten(-2) # in einsum notation: rearrange(x, '... d j -> ... (d j)') def apply_rotary_pos_emb(x, sincos, offset=0): sin, cos = map(lambda t: t[None, offset : x.shape[1] + offset, None, :].repeat_interleave(2, 3), sincos) # einsum notation for lambda t: repeat(t[offset:x.shape[1]+offset,:], "n d -> () n () (d j)", j=2) return (x * cos) + (rotate_every_two(x) * sin) class ProGenAttention(nn.Module): def __init__(self, config): super().__init__() max_positions = config.max_position_embeddings self.register_buffer( "bias", torch.tril(torch.ones((max_positions, max_positions), dtype=torch.bool)).view( 1, 1, max_positions, max_positions ), ) self.register_buffer("masked_bias", torch.tensor(-1e9)) self.attn_dropout = nn.Dropout(config.attn_pdrop) self.resid_dropout = nn.Dropout(config.resid_pdrop) self.embed_dim = config.hidden_size self.num_attention_heads = config.num_attention_heads self.head_dim = self.embed_dim // self.num_attention_heads if self.head_dim * self.num_attention_heads != self.embed_dim: raise ValueError( f"embed_dim must be divisible by num_attention_heads (got `embed_dim`: {self.embed_dim} and `num_attention_heads`: {self.num_attention_heads})." ) self.scale_attn = torch.sqrt(torch.tensor(self.head_dim, dtype=torch.float32)).to(torch.get_default_dtype()) self.qkv_proj = nn.Linear(self.embed_dim, self.embed_dim * 3, bias=False) self.out_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=False) self.rotary_dim = None if config.rotary_dim is not None: self.rotary_dim = config.rotary_dim def _split_heads(self, x, n_head, dim_head, mp_num): reshaped = x.reshape(x.shape[:-1] + (n_head//mp_num, dim_head)) reshaped = reshaped.reshape(x.shape[:-2] + (-1, ) + reshaped.shape[-1:]) return reshaped def _merge_heads(self, tensor, num_attention_heads, attn_head_size): """ Merges attn_head_size dim and num_attn_heads dim into n_ctx """ if len(tensor.shape) == 5: tensor = tensor.permute(0, 1, 3, 2, 4).contiguous() elif len(tensor.shape) == 4: tensor = tensor.permute(0, 2, 1, 3).contiguous() else: raise ValueError(f"Input tensor rank should be one of [4, 5], but is: {len(tensor.shape)}") new_shape = tensor.size()[:-2] + (num_attention_heads * attn_head_size,) return tensor.view(new_shape) def _attn( self, query, key, value, attention_mask=None, head_mask=None, ): # compute causal mask from causal mask buffer query_length, key_length = query.size(-2), key.size(-2) causal_mask = self.bias[:, :, key_length - query_length : key_length, :key_length] # Keep the attention weights computation in fp32 to avoid overflow issues query = query.to(torch.float32) key = key.to(torch.float32) attn_weights = torch.matmul(query, key.transpose(-1, -2)) attn_weights = attn_weights / self.scale_attn attn_weights = torch.where(causal_mask, attn_weights, self.masked_bias.to(attn_weights.dtype)) if attention_mask is not None: # Apply the attention mask attn_weights = attn_weights + attention_mask attn_weights = nn.Softmax(dim=-1)(attn_weights) attn_weights = attn_weights.to(value.dtype) attn_weights = self.attn_dropout(attn_weights) # Mask heads if we want to if head_mask is not None: attn_weights = attn_weights * head_mask attn_output = torch.matmul(attn_weights, value) return attn_output, attn_weights def forward( self, hidden_states, attention_mask=None, layer_past=None, head_mask=None, use_cache=False, output_attentions=False, ): qkv = self.qkv_proj(hidden_states) # TODO(enijkamp): factor out number of logical TPU-v3/v4 cores or make forward pass agnostic # mp_num = 4 mp_num = 8 qkv_split = qkv.reshape(qkv.shape[:-1] + (mp_num, -1)) local_dim = self.head_dim * self.num_attention_heads // mp_num query, value, key = torch.split(qkv_split, local_dim, dim=-1) query = self._split_heads(query, self.num_attention_heads, self.head_dim, mp_num=mp_num) key = self._split_heads(key, self.num_attention_heads, self.head_dim, mp_num=mp_num) value = self._split_heads(value, self.num_attention_heads, self.head_dim, mp_num=mp_num) value = value.permute(0, 2, 1, 3) seq_len = key.shape[1] offset = 0 if layer_past is not None: offset = layer_past[0].shape[-2] seq_len += offset if self.rotary_dim is not None: k_rot = key[:, :, :, : self.rotary_dim] k_pass = key[:, :, :, self.rotary_dim :] q_rot = query[:, :, :, : self.rotary_dim] q_pass = query[:, :, :, self.rotary_dim :] sincos = fixed_pos_embedding(k_rot, 1, seq_len=seq_len) k_rot = apply_rotary_pos_emb(k_rot, sincos, offset=offset) q_rot = apply_rotary_pos_emb(q_rot, sincos, offset=offset) key = torch.cat([k_rot, k_pass], dim=-1) query = torch.cat([q_rot, q_pass], dim=-1) else: sincos = fixed_pos_embedding(key, 1, seq_len=seq_len) key = apply_rotary_pos_emb(key, sincos, offset=offset) query = apply_rotary_pos_emb(query, sincos, offset=offset) key = key.permute(0, 2, 1, 3) query = query.permute(0, 2, 1, 3) if layer_past is not None: past_key = layer_past[0] past_value = layer_past[1] key = torch.cat((past_key, key), dim=-2) value = torch.cat((past_value, value), dim=-2) if use_cache is True: present = (key, value) else: present = None # compute self-attention: V x Softmax(QK^T) attn_output, attn_weights = self._attn(query, key, value, attention_mask, head_mask) attn_output = self._merge_heads(attn_output, self.num_attention_heads, self.head_dim) attn_output = self.out_proj(attn_output) attn_output = self.resid_dropout(attn_output) outputs = (attn_output, present) if output_attentions: outputs += (attn_weights,) return outputs # a, present, (attentions) class ProGenMLP(nn.Module): def __init__(self, intermediate_size, config): # in MLP: intermediate_size= 4 * embed_dim super().__init__() embed_dim = config.n_embd self.fc_in = nn.Linear(embed_dim, intermediate_size) self.fc_out = nn.Linear(intermediate_size, embed_dim) self.act = ACT2FN[config.activation_function] self.dropout = nn.Dropout(config.resid_pdrop) def forward(self, hidden_states): hidden_states = self.fc_in(hidden_states) hidden_states = self.act(hidden_states) hidden_states = self.fc_out(hidden_states) hidden_states = self.dropout(hidden_states) return hidden_states class ProGenBlock(nn.Module): def __init__(self, config): super().__init__() inner_dim = config.n_inner if config.n_inner is not None else 4 * config.n_embd self.ln_1 = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon) self.attn = ProGenAttention(config) self.mlp = ProGenMLP(inner_dim, config) def forward( self, hidden_states, layer_past=None, attention_mask=None, head_mask=None, use_cache=False, output_attentions=False, ): residual = hidden_states hidden_states = self.ln_1(hidden_states) attn_outputs = self.attn( hidden_states, layer_past=layer_past, attention_mask=attention_mask, head_mask=head_mask, use_cache=use_cache, output_attentions=output_attentions, ) attn_output = attn_outputs[0] # output_attn: a, present, (attentions) outputs = attn_outputs[1:] feed_forward_hidden_states = self.mlp(hidden_states) hidden_states = attn_output + feed_forward_hidden_states + residual if use_cache: outputs = (hidden_states,) + outputs else: outputs = (hidden_states,) + outputs[1:] return outputs # hidden_states, present, (attentions) class ProGenPreTrainedModel(PreTrainedModel): """ An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained models. """ config_class = ProGenConfig base_model_prefix = "transformer" supports_gradient_checkpointing = True is_parallelizable = True def __init__(self, *inputs, **kwargs): super().__init__(*inputs, **kwargs) def _init_weights(self, module): """Initialize the weights.""" if isinstance(module, (nn.Linear,)): # Slightly different from Mesh Transformer JAX which uses truncated_normal for initialization # cf https://github.com/pytorch/pytorch/pull/5617 module.weight.data.normal_(mean=0.0, std=self.config.initializer_range) if module.bias is not None: module.bias.data.zero_() elif isinstance(module, nn.Embedding): module.weight.data.normal_(mean=0.0, std=self.config.initializer_range) if module.padding_idx is not None: module.weight.data[module.padding_idx].zero_() elif isinstance(module, nn.LayerNorm): module.bias.data.zero_() module.weight.data.fill_(1.0) def _set_gradient_checkpointing(self, module, value=False): if isinstance(module, ProGenModel): module.gradient_checkpointing = value class ProGenModel(ProGenPreTrainedModel): def __init__(self, config): super().__init__(config) self.embed_dim = config.n_embd self.vocab_size = config.vocab_size self.wte = nn.Embedding(config.vocab_size, self.embed_dim) self.drop = nn.Dropout(config.embd_pdrop) self.h = nn.ModuleList([ProGenBlock(config) for _ in range(config.n_layer)]) self.ln_f = nn.LayerNorm(self.embed_dim, eps=config.layer_norm_epsilon) self.rotary_dim = min(config.rotary_dim, config.n_ctx // config.num_attention_heads) self.gradient_checkpointing = False self.structure = StructureTransformer(**config.structure) self.init_weights() # Model parallel self.model_parallel = False self.device_map = None def parallelize(self, device_map=None): # Check validity of device_map self.device_map = ( get_device_map(len(self.h), range(torch.cuda.device_count())) if device_map is None else device_map ) assert_device_map(self.device_map, len(self.h)) self.model_parallel = True self.first_device = "cpu" if "cpu" in self.device_map.keys() else "cuda:" + str(min(self.device_map.keys())) self.last_device = "cuda:" + str(max(self.device_map.keys())) self.wte = self.wte.to(self.first_device) # Load onto devices for k, v in self.device_map.items(): for block in v: cuda_device = "cuda:" + str(k) self.h[block] = self.h[block].to(cuda_device) # ln_f to last self.ln_f = self.ln_f.to(self.last_device) def deparallelize(self): self.model_parallel = False self.device_map = None self.first_device = "cpu" self.last_device = "cpu" self.wte = self.wte.to("cpu") for index in range(len(self.h)): self.h[index] = self.h[index].to("cpu") self.ln_f = self.ln_f.to("cpu") torch.cuda.empty_cache() def get_input_embeddings(self): return self.wte def set_input_embeddings(self, new_embeddings): self.wte = new_embeddings def forward( self, input_ids=None, past_key_values=None, attention_mask=None, token_type_ids=None, position_ids=None, head_mask=None, inputs_embeds=None, query_embeds=None, use_cache=None, output_attentions=None, output_hidden_states=None, return_dict=None, ): if past_key_values is None: # structure encode will check if input_ids contains valid structure_embs = self.structure.encode(input_ids) if structure_embs is not None: input_ids = input_ids[:, self.structure.n_queries:] else: structure_embs = None output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions output_hidden_states = ( output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states ) use_cache = use_cache if use_cache is not None else self.config.use_cache return_dict = return_dict if return_dict is not None else self.config.use_return_dict if input_ids is not None and inputs_embeds is not None: raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time") elif input_ids is not None: input_shape = input_ids.size() input_ids = input_ids.view(-1, input_shape[-1]) batch_size = input_ids.shape[0] elif inputs_embeds is not None: input_shape = inputs_embeds.size()[:-1] batch_size = inputs_embeds.shape[0] else: raise ValueError("You have to specify either input_ids or inputs_embeds") device = input_ids.device if input_ids is not None else inputs_embeds.device # if token_type_ids is not None: # token_type_ids = token_type_ids.view(-1, input_shape[-1]) if position_ids is not None: position_ids = position_ids.view(-1, input_shape[-1]) if past_key_values is None: past_length = 0 past_key_values = tuple([None] * len(self.h)) else: past_length = past_key_values[0][0].size(-2) if position_ids is None: position_ids = torch.arange(past_length, input_shape[-1] + past_length, dtype=torch.long, device=device) position_ids = position_ids.unsqueeze(0).view(-1, input_shape[-1]) # Attention mask. if attention_mask is not None: assert batch_size > 0, "batch_size has to be defined and > 0" attention_mask = attention_mask.view(batch_size, -1) # We create a 3D attention mask from a 2D tensor mask. # Sizes are [batch_size, 1, 1, to_seq_length] # So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length] # this attention mask is more simple than the triangular masking of causal attention # used in OpenAI GPT, we just need to prepare the broadcast dimension here. attention_mask = attention_mask[:, None, None, :] # Since attention_mask is 1.0 for positions we want to attend and 0.0 for # masked positions, this operation will create a tensor which is 0.0 for # positions we want to attend and -10000.0 for masked positions. # Since we are adding it to the raw scores before the softmax, this is # effectively the same as removing these entirely. attention_mask = attention_mask.to(dtype=self.dtype) # fp16 compatibility attention_mask = (1.0 - attention_mask) * -10000.0 # Prepare head mask if needed # 1.0 in head_mask indicate we keep the head # attention_probs has shape bsz x num_attention_heads x N x N # head_mask has shape n_layer x batch x num_attention_heads x N x N head_mask = self.get_head_mask(head_mask, self.config.n_layer) if inputs_embeds is None: inputs_embeds = self.wte(input_ids) if query_embeds is not None: inputs_embeds = torch.cat([query_embeds, inputs_embeds], dim=1) input_shape = inputs_embeds.size()[:-1] if structure_embs is not None: inputs_embeds = torch.cat([structure_embs, inputs_embeds], dim=1) input_shape = inputs_embeds.size()[:-1] hidden_states = inputs_embeds # disable token_type_ids # if token_type_ids is not None: # token_type_embeds = self.wte(token_type_ids) # hidden_states = hidden_states + token_type_embeds hidden_states = self.drop(hidden_states) output_shape = input_shape + (hidden_states.size(-1),) presents = () if use_cache else None all_self_attentions = () if output_attentions else None all_hidden_states = () if output_hidden_states else None for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)): # Model parallel if self.model_parallel: torch.cuda.set_device(hidden_states.device) # Ensure layer_past is on same device as hidden_states (might not be correct) if layer_past is not None: layer_past = tuple(past_state.to(hidden_states.device) for past_state in layer_past) # Ensure that attention_mask is always on the same device as hidden_states if attention_mask is not None: attention_mask = attention_mask.to(hidden_states.device) if isinstance(head_mask, torch.Tensor): head_mask = head_mask.to(hidden_states.device) if output_hidden_states: all_hidden_states = all_hidden_states + (hidden_states,) if self.gradient_checkpointing and self.training: if use_cache: # logger.warning( # "`use_cache=True` is incompatible with `config.gradient_checkpointing=True`. Setting " # "`use_cache=False`..." # ) use_cache = False def create_custom_forward(module): def custom_forward(*inputs): # None for past_key_value return module(*inputs, use_cache, output_attentions) return custom_forward outputs = torch.utils.checkpoint.checkpoint( create_custom_forward(block), hidden_states, None, attention_mask, head_mask[i], ) else: outputs = block( hidden_states, layer_past=layer_past, attention_mask=attention_mask, head_mask=head_mask[i], use_cache=use_cache, output_attentions=output_attentions, ) hidden_states = outputs[0] if use_cache is True: presents = presents + (outputs[1],) if output_attentions: all_self_attentions = all_self_attentions + (outputs[2 if use_cache else 1],) # Model Parallel: If it's the last layer for that device, put things on the next device if self.model_parallel: for k, v in self.device_map.items(): if i == v[-1] and "cuda:" + str(k) != self.last_device: hidden_states = hidden_states.to("cuda:" + str(k + 1)) hidden_states = self.ln_f(hidden_states) hidden_states = hidden_states.view(*output_shape) # Add last hidden state if output_hidden_states: all_hidden_states = all_hidden_states + (hidden_states,) if not return_dict: return tuple(v for v in [hidden_states, presents, all_hidden_states, all_self_attentions] if v is not None) return BaseModelOutputWithPast( last_hidden_state=hidden_states, past_key_values=presents, hidden_states=all_hidden_states, attentions=all_self_attentions, ) class ProGenForCausalLM(ProGenPreTrainedModel): _keys_to_ignore_on_load_missing = [r"h\.\d+\.attn\.masked_bias", r"h\.\d+\.attn\.bias", r"lm_head\.weight"] def __init__(self, config): super().__init__(config) self.transformer = ProGenModel(config) self.lm_head = nn.Linear(config.n_embd, config.vocab_size) self.init_weights() # Model parallel self.model_parallel = False self.device_map = None def parallelize(self, device_map=None): self.device_map = ( get_device_map(len(self.transformer.h), range(torch.cuda.device_count())) if device_map is None else device_map ) assert_device_map(self.device_map, len(self.transformer.h)) self.transformer.parallelize(self.device_map) self.lm_head = self.lm_head.to(self.transformer.first_device) self.model_parallel = True def deparallelize(self): self.transformer.deparallelize() self.transformer = self.transformer.to("cpu") self.lm_head = self.lm_head.to("cpu") self.model_parallel = False torch.cuda.empty_cache() def get_output_embeddings(self): return self.lm_head def set_output_embeddings(self, new_embeddings): self.lm_head = new_embeddings def prepare_inputs_for_generation( self, input_ids, past_key_values=None, attention_mask=None, inputs_embeds=None, **kwargs ): if past_key_values: input_ids = input_ids[:, -1:] # if `inputs_embeds` are passed, we only want to use them in the 1st generation step if inputs_embeds is not None and past_key_values is None: model_inputs = {"inputs_embeds": inputs_embeds} else: model_inputs = {"input_ids": input_ids} model_inputs.update( { "past_key_values": past_key_values, "use_cache": kwargs.get("use_cache"), "attention_mask": attention_mask, } ) return model_inputs def forward( self, input_ids=None, past_key_values=None, attention_mask=None, token_type_ids=None, position_ids=None, head_mask=None, inputs_embeds=None, labels=None, use_cache=None, query_embeds = None, output_attentions=None, output_hidden_states=None, return_dict=None, ): r""" labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`): Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set ``labels = input_ids`` Indices are selected in ``[-100, 0, ..., config.vocab_size]`` All labels set to ``-100`` are ignored (masked), the loss is only computed for labels in ``[0, ..., config.vocab_size]`` """ return_dict = return_dict if return_dict is not None else self.config.use_return_dict transformer_outputs = self.transformer( input_ids, past_key_values=past_key_values, attention_mask=attention_mask, token_type_ids=token_type_ids, position_ids=position_ids, head_mask=head_mask, inputs_embeds=inputs_embeds, query_embeds=query_embeds, use_cache=use_cache, output_attentions=output_attentions, output_hidden_states=output_hidden_states, return_dict=return_dict, ) hidden_states = transformer_outputs[0] # Set device for model parallelism if self.model_parallel: torch.cuda.set_device(self.transformer.first_device) hidden_states = hidden_states.to(self.lm_head.weight.device) # make sure sampling in fp16 works correctly and # compute loss in fp32 to match with mesh-tf version # https://github.com/EleutherAI/gpt-neo/blob/89ce74164da2fb16179106f54e2269b5da8db333/models/gpt2/gpt2.py#L179 lm_logits = self.lm_head(hidden_states).to(torch.float32) loss = None if labels is not None: # Shift so that tokens < n predict n shift_logits = lm_logits[..., :-1, :].contiguous() shift_labels = labels[..., 1:].contiguous() # Flatten the tokens loss_fct = CrossEntropyLoss() loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1)) loss = loss.to(hidden_states.dtype) if not return_dict: output = (lm_logits,) + transformer_outputs[1:] return ((loss,) + output) if loss is not None else output return CausalLMOutputWithPast( loss=loss, logits=lm_logits, past_key_values=transformer_outputs.past_key_values, hidden_states=transformer_outputs.hidden_states, attentions=transformer_outputs.attentions, ) @staticmethod def _reorder_cache(past: Tuple[Tuple[torch.Tensor]], beam_idx: torch.Tensor) -> Tuple[Tuple[torch.Tensor]]: """ This function is used to re-order the :obj:`past_key_values` cache if :meth:`~transformers.PretrainedModel.beam_search` or :meth:`~transformers.PretrainedModel.beam_sample` is called. This is required to match :obj:`past_key_values` with the correct beam_idx at every generation step. """ return tuple( tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past) for layer_past in past ) # def generate(self, inputs: Tensor | None = None, generation_config: GenerationConfig | None = None, logits_processor: LogitsProcessorList | None = None, stopping_criteria: StoppingCriteriaList | None = None, prefix_allowed_tokens_fn: Callable[[int, Tensor], List[int]] | None = None, synced_gpus: bool | None = None, assistant_model: PreTrainedModel | None = None, streamer: BaseStreamer | None = None, negative_prompt_ids: Tensor | None = None, negative_prompt_attention_mask: Tensor | None = None, **kwargs) -> GenerateOutput | LongTensor: # return super().generate(inputs, generation_config, logits_processor, stopping_criteria, prefix_allowed_tokens_fn, synced_gpus, assistant_model, streamer, negative_prompt_ids, negative_prompt_attention_mask, **kwargs)