ChartInstruct-FlanT5-XL / chartinstruct_flant5_modeling.py
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from typing import List, Optional, Tuple, Union
from dataclasses import dataclass
import copy, os
import torch
import torch.nn as nn
from torch.nn import CrossEntropyLoss
from transformers import AutoConfig, AutoModelForSeq2SeqLM, \
T5Config, T5Model, T5ForConditionalGeneration
from transformers.models.t5.modeling_t5 import T5Stack
from transformers.modeling_outputs import CausalLMOutputWithPast, Seq2SeqLMOutput, BaseModelOutput, BaseModelOutputWithPastAndCrossAttentions
from transformers.utils import ModelOutput
from transformers import DonutSwinModel, DonutImageProcessor, DonutSwinConfig
from abc import ABC, abstractmethod
import re
from transformers import T5PreTrainedModel
from transformers.models.t5.modeling_t5 import T5Block, T5LayerNorm
@dataclass
class BaseModelOutputWithPastAndCrossAttentionsWithAttentionMask(ModelOutput):
"""
Base class for model's outputs that may also contain a past key/values (to speed up sequential decoding).
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
If `past_key_values` is used only the last hidden-state of the sequences of shape `(batch_size, 1,
hidden_size)` is output.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and optionally if
`config.is_encoder_decoder=True` 2 additional tensors of shape `(batch_size, num_heads,
encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and optionally if
`config.is_encoder_decoder=True` in the cross-attention blocks) that can be used (see `past_key_values`
input) to speed up sequential decoding.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` and `config.add_cross_attention=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
"""
last_hidden_state: torch.FloatTensor = None
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
attention_mask: Optional[torch.LongTensor] = None
class LlavaT5Config(T5Config):
model_type = "llava_t5"
class LlavaT5Stack(T5PreTrainedModel):
config_class = LlavaT5Config
def __init__(self, config, embed_tokens=None):
super().__init__(config)
self.embed_tokens = embed_tokens
self.is_decoder = config.is_decoder
self.block = nn.ModuleList(
[T5Block(config, has_relative_attention_bias=bool(i == 0)) for i in range(config.num_layers)]
)
self.final_layer_norm = T5LayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
## Vision
vision_config = DonutSwinConfig(**config.vision_config)
self.vision_tower = DonutSwinModel(config=vision_config)
self.mm_projector = nn.Linear(config.mm_hidden_size, config.hidden_size)
self.pad_token_id = 0
self.image_token_index = 32100
##
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
self.gradient_checkpointing = False
def _merge_input_ids_with_image_features(self, image_features, inputs_embeds, input_ids, attention_mask):
num_images, num_image_patches, embed_dim = image_features.shape
batch_size, sequence_length = input_ids.shape
left_padding = not torch.sum(input_ids[:, -1] == torch.tensor(self.pad_token_id))
# 1. Create a mask to know where special image tokens are
special_image_token_mask = input_ids == self.image_token_index
num_special_image_tokens = torch.sum(special_image_token_mask, dim=-1)
# Compute the maximum embed dimension
max_embed_dim = (num_special_image_tokens.max() * (num_image_patches - 1)) + sequence_length
batch_indices, non_image_indices = torch.where(input_ids != self.image_token_index)
# 2. Compute the positions where text should be written
# Calculate new positions for text tokens in merged image-text sequence.
# `special_image_token_mask` identifies image tokens. Each image token will be replaced by `nb_text_tokens_per_images - 1` text tokens.
# `torch.cumsum` computes how each image token shifts subsequent text token positions.
# - 1 to adjust for zero-based indexing, as `cumsum` inherently increases indices by one.
new_token_positions = torch.cumsum((special_image_token_mask * (num_image_patches - 1) + 1), -1) - 1
nb_image_pad = max_embed_dim - 1 - new_token_positions[:, -1]
if left_padding:
new_token_positions += nb_image_pad[:, None] # offset for left padding
text_to_overwrite = new_token_positions[batch_indices, non_image_indices]
# 3. Create the full embedding, already padded to the maximum position
final_embedding = torch.zeros(
batch_size, max_embed_dim, embed_dim, dtype=inputs_embeds.dtype, device=inputs_embeds.device
)
final_attention_mask = torch.zeros(
batch_size, max_embed_dim, dtype=attention_mask.dtype, device=inputs_embeds.device
)
# In case the Vision model or the Language model has been offloaded to CPU, we need to manually
# set the corresponding tensors into their correct target device.
target_device = inputs_embeds.device
batch_indices, non_image_indices, text_to_overwrite = (
batch_indices.to(target_device),
non_image_indices.to(target_device),
text_to_overwrite.to(target_device),
)
attention_mask = attention_mask.to(target_device)
# 4. Fill the embeddings based on the mask. If we have ["hey" "<image>", "how", "are"]
# we need to index copy on [0, 577, 578, 579] for the text and [1:576] for the image features
final_embedding[batch_indices, text_to_overwrite] = inputs_embeds[batch_indices, non_image_indices]
final_attention_mask[batch_indices, text_to_overwrite] = attention_mask[batch_indices, non_image_indices]
# 5. Fill the embeddings corresponding to the images. Anything that is not `text_positions` needs filling (#29835)
image_to_overwrite = torch.full(
(batch_size, max_embed_dim), True, dtype=torch.bool, device=inputs_embeds.device
)
image_to_overwrite[batch_indices, text_to_overwrite] = False
image_to_overwrite &= image_to_overwrite.cumsum(-1) - 1 >= nb_image_pad[:, None].to(target_device)
if image_to_overwrite.sum() != image_features.shape[:-1].numel():
raise ValueError(
f"The input provided to the model are wrong. The number of image tokens is {torch.sum(special_image_token_mask)} while"
f" the number of image given to the model is {num_images}. This prevents correct indexing and breaks batch generation."
)
final_embedding[image_to_overwrite] = image_features.contiguous().reshape(-1, embed_dim).to(target_device)
final_attention_mask |= image_to_overwrite
# 6. Mask out the embedding at padding positions, as we later use the past_key_value value to determine the non-attended tokens.
batch_indices, pad_indices = torch.where(input_ids == self.pad_token_id)
indices_to_mask = new_token_positions[batch_indices, pad_indices]
final_embedding[batch_indices, indices_to_mask] = 0
return final_embedding, final_attention_mask
def forward(
self,
input_ids=None,
attention_mask=None,
pixel_values=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
inputs_embeds=None,
head_mask=None,
cross_attn_head_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
# Model parallel
if self.model_parallel:
torch.cuda.set_device(self.first_device)
self.embed_tokens = self.embed_tokens.to(self.first_device)
use_cache = use_cache if use_cache is not None else self.config.use_cache
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
err_msg_prefix = "decoder_" if self.is_decoder else ""
raise ValueError(
f"You cannot specify both {err_msg_prefix}input_ids and {err_msg_prefix}inputs_embeds at the same time"
)
elif input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
err_msg_prefix = "decoder_" if self.is_decoder else ""
raise ValueError(f"You have to specify either {err_msg_prefix}input_ids or {err_msg_prefix}inputs_embeds")
if inputs_embeds is None:
if self.embed_tokens is None:
raise ValueError("You have to initialize the model with valid token embeddings")
inputs_embeds = self.embed_tokens(input_ids)
### Multimodal
vision_feature_layer = -1
vision_feature_select_strategy = "default"
image_outputs = self.vision_tower(pixel_values, output_hidden_states=True)
# this is not memory efficient at all (output_hidden_states=True) will save all the hidden stated.
selected_image_feature = image_outputs.hidden_states[vision_feature_layer]
if vision_feature_select_strategy == "default":
selected_image_feature = selected_image_feature[:, 1:]
elif vision_feature_select_strategy == "full":
selected_image_feature = selected_image_feature
else:
raise ValueError(
f"Unexpected select feature strategy: {self.config.vision_feature_select_strategy}"
)
image_features = self.mm_projector(selected_image_feature)
inputs_embeds = inputs_embeds.to(image_features.dtype)
inputs_embeds, attention_mask = self._merge_input_ids_with_image_features(
image_features, inputs_embeds, input_ids, attention_mask
)
input_shape = inputs_embeds.size()[:-1]
#################
batch_size, seq_length = input_shape
# required mask seq length can be calculated via length of past
mask_seq_length = past_key_values[0][0].shape[2] + seq_length if past_key_values is not None else seq_length
if use_cache is True:
if not self.is_decoder:
raise ValueError(f"`use_cache` can only be set to `True` if {self} is used as a decoder")
# initialize past_key_values with `None` if past does not exist
if past_key_values is None:
past_key_values = [None] * len(self.block)
if attention_mask is None:
attention_mask = torch.ones(batch_size, mask_seq_length, device=inputs_embeds.device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(
encoder_hidden_shape, device=inputs_embeds.device, dtype=torch.long
)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
if self.gradient_checkpointing and self.training:
if use_cache:
# logger.warning_once(
# "`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
# )
use_cache = False
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.num_layers)
cross_attn_head_mask = self.get_head_mask(cross_attn_head_mask, self.config.num_layers)
present_key_value_states = () if use_cache else None
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
all_cross_attentions = () if (output_attentions and self.is_decoder) else None
position_bias = None
encoder_decoder_position_bias = None
hidden_states = self.dropout(inputs_embeds)
for i, (layer_module, past_key_value) in enumerate(zip(self.block, past_key_values)):
layer_head_mask = head_mask[i]
cross_attn_layer_head_mask = cross_attn_head_mask[i]
# Model parallel
if self.model_parallel:
torch.cuda.set_device(hidden_states.device)
# Ensure that attention_mask is always on the same device as hidden_states
if attention_mask is not None:
attention_mask = attention_mask.to(hidden_states.device)
if position_bias is not None:
position_bias = position_bias.to(hidden_states.device)
if encoder_hidden_states is not None:
encoder_hidden_states = encoder_hidden_states.to(hidden_states.device)
if encoder_extended_attention_mask is not None:
encoder_extended_attention_mask = encoder_extended_attention_mask.to(hidden_states.device)
if encoder_decoder_position_bias is not None:
encoder_decoder_position_bias = encoder_decoder_position_bias.to(hidden_states.device)
if layer_head_mask is not None:
layer_head_mask = layer_head_mask.to(hidden_states.device)
if cross_attn_layer_head_mask is not None:
cross_attn_layer_head_mask = cross_attn_layer_head_mask.to(hidden_states.device)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.forward,
hidden_states,
extended_attention_mask,
position_bias,
encoder_hidden_states,
encoder_extended_attention_mask,
encoder_decoder_position_bias,
layer_head_mask,
cross_attn_layer_head_mask,
None, # past_key_value is always None with gradient checkpointing
use_cache,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask=extended_attention_mask,
position_bias=position_bias,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
encoder_decoder_position_bias=encoder_decoder_position_bias,
layer_head_mask=layer_head_mask,
cross_attn_layer_head_mask=cross_attn_layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
output_attentions=output_attentions,
)
# layer_outputs is a tuple with:
# hidden-states, key-value-states, (self-attention position bias), (self-attention weights), (cross-attention position bias), (cross-attention weights)
if use_cache is False:
layer_outputs = layer_outputs[:1] + (None,) + layer_outputs[1:]
hidden_states, present_key_value_state = layer_outputs[:2]
# We share the position biases between the layers - the first layer store them
# layer_outputs = hidden-states, key-value-states (self-attention position bias), (self-attention weights),
# (cross-attention position bias), (cross-attention weights)
position_bias = layer_outputs[2]
if self.is_decoder and encoder_hidden_states is not None:
encoder_decoder_position_bias = layer_outputs[4 if output_attentions else 3]
# append next layer key value states
if use_cache:
present_key_value_states = present_key_value_states + (present_key_value_state,)
if output_attentions:
all_attentions = all_attentions + (layer_outputs[3],)
if self.is_decoder:
all_cross_attentions = all_cross_attentions + (layer_outputs[5],)
# Model Parallel: If it's the last layer for that device, put things on the next device
if self.model_parallel:
for k, v in self.device_map.items():
if i == v[-1] and "cuda:" + str(k) != self.last_device:
hidden_states = hidden_states.to("cuda:" + str(k + 1))
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
present_key_value_states,
all_hidden_states,
all_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentionsWithAttentionMask(
last_hidden_state=hidden_states,
past_key_values=present_key_value_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
cross_attentions=all_cross_attentions,
attention_mask=attention_mask,
)
class LlavaT5ForConditionalGeneration(T5ForConditionalGeneration):
config_class = LlavaT5Config
def __init__(self, config):
super(T5ForConditionalGeneration, self).__init__(config)
self.model_dim = config.d_model
self.shared = nn.Embedding(config.vocab_size, config.d_model)
encoder_config = copy.deepcopy(config)
encoder_config.is_decoder = False
encoder_config.use_cache = False
encoder_config.is_encoder_decoder = False
self.encoder = LlavaT5Stack(encoder_config, self.shared)
decoder_config = copy.deepcopy(config)
decoder_config.is_decoder = True
decoder_config.is_encoder_decoder = False
decoder_config.num_layers = config.num_decoder_layers
self.decoder = T5Stack(decoder_config, self.shared)
self.lm_head = nn.Linear(config.d_model, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
def get_model(self):
return self.encoder
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
pixel_values: Optional[torch.FloatTensor] = None,
return_dict: Optional[bool] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
decoder_head_mask: Optional[torch.FloatTensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.Tensor]]] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
) -> Union[Tuple, Seq2SeqLMOutput]:
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# FutureWarning: head_mask was separated into two input args - head_mask, decoder_head_mask
if head_mask is not None and decoder_head_mask is None:
if self.config.num_layers == self.config.num_decoder_layers:
#warnings.warn(__HEAD_MASK_WARNING_MSG, FutureWarning)
decoder_head_mask = head_mask
if encoder_outputs is not None:
attention_mask = encoder_outputs.attention_mask
# Encode if needed (training, first prediction pass)
if encoder_outputs is None:
# Convert encoder inputs in embeddings if needed
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
pixel_values=pixel_values,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
hidden_states = encoder_outputs[0]
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
if labels is not None and decoder_input_ids is None and decoder_inputs_embeds is None:
# get decoder inputs from shifting lm labels to the right
decoder_input_ids = self._shift_right(labels)
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
hidden_states = hidden_states.to(self.decoder.first_device)
if decoder_input_ids is not None:
decoder_input_ids = decoder_input_ids.to(self.decoder.first_device)
if attention_mask is not None:
attention_mask = attention_mask.to(self.decoder.first_device)
if decoder_attention_mask is not None:
decoder_attention_mask = decoder_attention_mask.to(self.decoder.first_device)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
inputs_embeds=decoder_inputs_embeds,
past_key_values=past_key_values,
encoder_hidden_states=hidden_states,
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = decoder_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.encoder.first_device)
self.lm_head = self.lm_head.to(self.encoder.first_device)
sequence_output = sequence_output.to(self.lm_head.weight.device)
if self.config.tie_word_embeddings:
# Rescale output before projecting on vocab
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/transformer/transformer.py#L586
sequence_output = sequence_output * (self.model_dim**-0.5)
lm_logits = self.lm_head(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss(ignore_index=-100)
# move labels to correct device to enable PP
labels = labels.to(lm_logits.device)
loss = loss_fct(lm_logits.view(-1, lm_logits.size(-1)), labels.view(-1))
# TODO(thom): Add z_loss https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L666
if not return_dict:
output = (lm_logits,) + decoder_outputs[1:] + encoder_outputs
return ((loss,) + output) if loss is not None else output
return Seq2SeqLMOutput(
loss=loss,
logits=lm_logits,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
def prepare_inputs_for_generation(
self,
input_ids,
past_key_values=None,
attention_mask=None,
head_mask=None,
decoder_head_mask=None,
decoder_attention_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
return {
"decoder_input_ids": input_ids,
"past_key_values": past_key_values,
"encoder_outputs": encoder_outputs,
"attention_mask": attention_mask,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"decoder_attention_mask": decoder_attention_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache,
"pixel_values": kwargs.get("pixel_values", None),
}