|
{ |
|
"architecture": "Conv4_FC3", |
|
"multi_network": false, |
|
"dropout": 0.0, |
|
"latent_space_dimension": 64, |
|
"latent_space_size": 2, |
|
"selection_metrics": [ |
|
"loss" |
|
], |
|
"label": "diagnosis", |
|
"selection_threshold": 0.0, |
|
"gpu": true, |
|
"n_proc": 32, |
|
"batch_size": 32, |
|
"evaluation_steps": 20, |
|
"seed": 0, |
|
"deterministic": false, |
|
"compensation": "memory", |
|
"transfer_path": "../../autoencoders/exp3/maps", |
|
"transfer_selection_metric": "loss", |
|
"use_extracted_features": false, |
|
"multi_cohort": false, |
|
"diagnoses": [ |
|
"AD", |
|
"CN" |
|
], |
|
"baseline": true, |
|
"normalize": true, |
|
"data_augmentation": false, |
|
"sampler": "random", |
|
"n_splits": 5, |
|
"epochs": 200, |
|
"learning_rate": 1e-05, |
|
"weight_decay": 0.0001, |
|
"patience": 10, |
|
"tolerance": 0.0, |
|
"accumulation_steps": 1, |
|
"optimizer": "Adam", |
|
"preprocessing_dict": { |
|
"preprocessing": "t1-linear", |
|
"mode": "roi", |
|
"use_uncropped_image": false, |
|
"roi_list": [ |
|
"leftHippocampusBox", |
|
"rightHippocampusBox" |
|
], |
|
"uncropped_roi": false, |
|
"prepare_dl": false, |
|
"file_type": { |
|
"pattern": "*space-MNI152NLin2009cSym_desc-Crop_res-1x1x1_T1w.nii.gz", |
|
"description": "T1W Image registered using t1-linear and cropped (matrix size 169\u00d7208\u00d7179, 1 mm isotropic voxels)", |
|
"needed_pipeline": "t1-linear" |
|
} |
|
}, |
|
"mode": "roi", |
|
"network_task": "classification", |
|
"caps_directory": "$WORK/../commun/datasets/adni/caps/caps_v2021/", |
|
"tsv_path": "$WORK/Aramis_tools/ClinicaDL_tools/experiments_ADDL/data/ADNI/train", |
|
"validation": "KFoldSplit", |
|
"num_networks": 2, |
|
"label_code": { |
|
"AD": 0, |
|
"CN": 1 |
|
}, |
|
"output_size": 2, |
|
"input_size": [ |
|
1, |
|
50, |
|
50, |
|
50 |
|
] |
|
} |
|
|