| # ruff: noqa: F401 | |
| from pathlib import Path | |
| GENE_MEDIAN_FILE = Path(__file__).parent / "gene_median_dictionary.pkl" | |
| TOKEN_DICTIONARY_FILE = Path(__file__).parent / "token_dictionary.pkl" | |
| ENSEMBL_DICTIONARY_FILE = Path(__file__).parent / "gene_name_id_dict.pkl" | |
| ENSEMBL_MAPPING_FILE = Path(__file__).parent / "ensembl_mapping_dict.pkl" | |
| from . import ( | |
| collator_for_classification, | |
| emb_extractor, | |
| in_silico_perturber, | |
| in_silico_perturber_stats, | |
| pretrainer, | |
| tokenizer, | |
| ) | |
| from .collator_for_classification import ( | |
| DataCollatorForCellClassification, | |
| DataCollatorForGeneClassification, | |
| ) | |
| from .emb_extractor import EmbExtractor, get_embs | |
| from .in_silico_perturber import InSilicoPerturber | |
| from .in_silico_perturber_stats import InSilicoPerturberStats | |
| from .pretrainer import GeneformerPretrainer | |
| from .tokenizer import TranscriptomeTokenizer | |
| from . import classifier # noqa # isort:skip | |
| from .classifier import Classifier # noqa # isort:skip |