ctheodoris
commited on
Commit
•
57bc17e
1
Parent(s):
fce3f6e
move dict loading to function in eval utils
Browse files
docs/source/geneformer.mtl_classifier.rst
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geneformer.mtl\_classifier
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-
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.. automodule:: geneformer.mtl_classifier
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:members:
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geneformer.mtl\_classifier
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==========================
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.. automodule:: geneformer.mtl_classifier
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:members:
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geneformer/evaluation_utils.py
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@@ -25,15 +25,15 @@ from .emb_extractor import make_colorbar
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logger = logging.getLogger(__name__)
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# load token dictionary (Ensembl IDs:token)
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with open(TOKEN_DICTIONARY_FILE, "rb") as f:
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gene_token_dict = pickle.load(f)
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def preprocess_classifier_batch(cell_batch, max_len, label_name):
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if max_len is None:
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max_len = max([len(i) for i in cell_batch["input_ids"]])
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def pad_label_example(example):
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example[label_name] = np.pad(
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example[label_name],
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logger = logging.getLogger(__name__)
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def preprocess_classifier_batch(cell_batch, max_len, label_name):
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if max_len is None:
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max_len = max([len(i) for i in cell_batch["input_ids"]])
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# load token dictionary (Ensembl IDs:token)
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with open(TOKEN_DICTIONARY_FILE, "rb") as f:
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gene_token_dict = pickle.load(f)
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def pad_label_example(example):
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example[label_name] = np.pad(
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example[label_name],
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