ctheodoris
commited on
Commit
•
59ee7f9
1
Parent(s):
0f88377
remove testing prints
Browse files
geneformer/in_silico_perturber.py
CHANGED
@@ -1300,7 +1300,6 @@ class InSilicoPerturber:
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summary_stat=None,
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silent=True,
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)
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print("TESTINGGGG")
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# need to remove overexpressed gene and cls/eos to quantify cosine shifts
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if self.perturb_type == "overexpress":
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@@ -1387,8 +1386,6 @@ class InSilicoPerturber:
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del perturbation_cls_emb
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del cls_cos_sims
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del gene_cos_sims
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print("test")
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print(dir())
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# save dict to disk every self.clear_mem_ncells/10 (default 100) cells
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if i % max(1,self.clear_mem_ncells/10) == 0:
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summary_stat=None,
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silent=True,
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)
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# need to remove overexpressed gene and cls/eos to quantify cosine shifts
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if self.perturb_type == "overexpress":
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del perturbation_cls_emb
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del cls_cos_sims
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del gene_cos_sims
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# save dict to disk every self.clear_mem_ncells/10 (default 100) cells
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if i % max(1,self.clear_mem_ncells/10) == 0:
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