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ctheodoris
/
Geneformer
like
209
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
Inference Endpoints
License:
apache-2.0
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1366905
Geneformer
/
examples
15 contributors
History:
30 commits
Christina Theodoris
Add option to output embs as tensor
624349c
about 1 year ago
pretraining_new_model
Update links including unsorted example lengths file
over 1 year ago
cell_classification.ipynb
Safe
96.1 kB
Add note to recommend tuning hyperparameters for downstream applications
over 1 year ago
extract_and_plot_cell_embeddings.ipynb
Safe
1.13 MB
Add option to output embs as tensor
about 1 year ago
gene_classification.ipynb
Safe
168 kB
Add note to recommend tuning hyperparameters for downstream applications
over 1 year ago
hyperparam_optimiz_for_disease_classifier.py
Safe
7.84 kB
Config head node runtime via IP (#234)
over 1 year ago
in_silico_perturbation.ipynb
Safe
3.65 kB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
over 1 year ago
tokenizing_scRNAseq_data.ipynb
Safe
3.74 kB
anndata_tokenizer (#170)
over 1 year ago
