ctheodoris
/

Geneformer

Inference Endpoints

Model card Files Files and versions Community

Geneformer / examples

15 contributors

History: 34 commits

Christina Theodoris

add option for hyperparameter tuning to cc.validate

4bddd45 9 months ago

pretraining_new_model
Update links including unsorted example lengths file over 1 year ago
cell_classification.ipynb

106 kB

add option for hyperparameter tuning to cc.validate 9 months ago
extract_and_plot_cell_embeddings.ipynb

1.13 MB

Add classifier module and examples 10 months ago
gene_classification.ipynb

180 kB

Add classifier module and examples 10 months ago
in_silico_perturbation.ipynb

5.06 kB

Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp about 1 year ago
tokenizing_scRNAseq_data.ipynb

3.74 kB

anndata_tokenizer (#170) over 1 year ago