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ctheodoris
/
Geneformer
like
209
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
464
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refs/pr/354
Geneformer
/
geneformer
15 contributors
History:
83 commits
hchen725
Update geneformer/perturber_utils.py
b8633a7
verified
6 months ago
__init__.py
Safe
656 Bytes
fix cell state gene embeddings bug (#345)
7 months ago
classifier.py
Safe
60.7 kB
patch datasets save_to_disk
7 months ago
classifier_utils.py
Safe
16.7 kB
Update for gene classification (#330)
9 months ago
collator_for_classification.py
Safe
29.8 kB
Subclass collator for cell classification
over 1 year ago
emb_extractor.py
Safe
29.3 kB
Update geneformer/emb_extractor.py (#350)
6 months ago
evaluation_utils.py
Safe
9.76 kB
update examples for predict_eval and handle roc for 2 cell classes
10 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
about 2 years ago
gene_name_id_dict.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
over 1 year ago
in_silico_perturber.py
Safe
38.9 kB
fix cell state gene embeddings bug (#345)
7 months ago
in_silico_perturber_stats.py
Safe
43.5 kB
Upload in_silico_perturber_stats.py (#313)
7 months ago
perturber_utils.py
Safe
27.2 kB
Update geneformer/perturber_utils.py
6 months ago
pretrainer.py
Safe
37.1 kB
update kwargs for pretrainer
8 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
tokenizer.py
Safe
16.5 kB
fix cell state gene embeddings bug (#345)
7 months ago