fix the bugs

QuakeFlow_NC.py

@@ -0,0 +1,164 @@
+# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# TODO: Address all TODOs and remove all explanatory comments
+# Lint as: python3
+"""QuakeFlow_NC: A dataset of earthquake waveforms organized by earthquake events and based on the HDF5 format."""
+
+
+import csv
+import json
+import os
+import h5py
+from glob import glob
+
+import datasets
+
+
+# TODO: Add BibTeX citation
+# Find for instance the citation on arxiv or on the dataset repo/website
+_CITATION = """\
+@InProceedings{huggingface:dataset,
+title = {A great new dataset},
+author={huggingface, Inc.
+},
+year={2020}
+}
+"""
+
+# TODO: Add description of the dataset here
+# You can copy an official description
+_DESCRIPTION = """\
+A dataset of earthquake waveforms organized by earthquake events and based on the HDF5 format.
+"""
+
+# TODO: Add a link to an official homepage for the dataset here
+_HOMEPAGE = ""
+
+# TODO: Add the licence for the dataset here if you can find it
+_LICENSE = ""
+
+# TODO: Add link to the official dataset URLs here
+# The HuggingFace Datasets library doesn't host the datasets but only points to the original files.
+# This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method)
+_REPO = "https://huggingface.co/datasets/AI4EPS/QuakeFlow_NC/resolve/main/data"
+_URLS = {
+    "NCEDC": [f"{_REPO}/ncedc_event_dataset_{i:03d}.h5" for i in range(37)]
+}
+
+
+# TODO: Name of the dataset usually matches the script name with CamelCase instead of snake_case
+class QuakeFlow_NC(datasets.GeneratorBasedBuilder):
+    """QuakeFlow_NC: A dataset of earthquake waveforms organized by earthquake events and based on the HDF5 format."""
+
+    VERSION = datasets.Version("1.1.0")
+
+    # This is an example of a dataset with multiple configurations.
+    # If you don't want/need to define several sub-sets in your dataset,
+    # just remove the BUILDER_CONFIG_CLASS and the BUILDER_CONFIGS attributes.
+
+    # If you need to make complex sub-parts in the datasets with configurable options
+    # You can create your own builder configuration class to store attribute, inheriting from datasets.BuilderConfig
+    # BUILDER_CONFIG_CLASS = MyBuilderConfig
+
+    # You will be able to load one or the other configurations in the following list with
+    # data = datasets.load_dataset('my_dataset', 'first_domain')
+    # data = datasets.load_dataset('my_dataset', 'second_domain')
+    BUILDER_CONFIGS = [
+        datasets.BuilderConfig(name="NCEDC", version=VERSION, description="This part of my dataset covers a first domain"),
+    ]
+
+    DEFAULT_CONFIG_NAME = "NCEDC"  # It's not mandatory to have a default configuration. Just use one if it make sense.
+
+    def _info(self):
+        # TODO: This method specifies the datasets.DatasetInfo object which contains informations and typings for the dataset
+        features=datasets.Features(
+            {
+                "event_id": datasets.Value("string"),
+                "station_id": datasets.Value("string"),
+                "waveform": datasets.Array2D(shape=(3, 12000), dtype="float32"),
+            }
+        )
+        return datasets.DatasetInfo(
+            # This is the description that will appear on the datasets page.
+            description=_DESCRIPTION,
+            # This defines the different columns of the dataset and their types
+            features=features,  # Here we define them above because they are different between the two configurations
+            # If there's a common (input, target) tuple from the features, uncomment supervised_keys line below and
+            # specify them. They'll be used if as_supervised=True in builder.as_dataset.
+            # supervised_keys=("sentence", "label"),
+            # Homepage of the dataset for documentation
+            homepage=_HOMEPAGE,
+            # License for the dataset if available
+            license=_LICENSE,
+            # Citation for the dataset
+            citation=_CITATION,
+        )
+
+    def _split_generators(self, dl_manager):
+        # TODO: This method is tasked with downloading/extracting the data and defining the splits depending on the configuration
+        # If several configurations are possible (listed in BUILDER_CONFIGS), the configuration selected by the user is in self.config.name
+
+        # dl_manager is a datasets.download.DownloadManager that can be used to download and extract URLS
+        # It can accept any type or nested list/dict and will give back the same structure with the url replaced with path to local files.
+        # By default the archives will be extracted and a path to a cached folder where they are extracted is returned instead of the archive
+        urls = _URLS[self.config.name]
+        # files = dl_manager.download(urls)
+        files = dl_manager.download_and_extract(urls)
+        # files = ["./data/ncedc_event_dataset_000.h5"]
+
+        return [
+            datasets.SplitGenerator(
+                name=datasets.Split.TRAIN,
+                # These kwargs will be passed to _generate_examples
+                gen_kwargs={
+                    "filepath": files,
+                    "split": "train",
+                },
+            ),
+            # datasets.SplitGenerator(
+            #     name=datasets.Split.VALIDATION,
+            #     # These kwargs will be passed to _generate_examples
+            #     gen_kwargs={
+            #         "filepath": os.path.join(data_dir, "dev.jsonl"),
+            #         "split": "dev",
+            #     },
+            # ),
+            # datasets.SplitGenerator(
+            #     name=datasets.Split.TEST,
+            #     # These kwargs will be passed to _generate_examples
+            #     gen_kwargs={
+            #         "filepath": os.path.join(data_dir, "test.jsonl"),
+            #         "split": "test"
+            #     },
+            # ),
+        ]
+
+    # method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
+    def _generate_examples(self, filepath, split):
+        # TODO: This method handles input defined in _split_generators to yield (key, example) tuples from the dataset.
+        # The `key` is for legacy reasons (tfds) and is not important in itself, but must be unique for each example.
+
+        for file in filepath:
+            with h5py.File(file, "r") as fp:
+                for event_id in sorted(list(fp.keys())):
+                    event = fp[event_id]
+                    for station_id in sorted(list(event.keys())):
+                        station = event[station_id]
+                        # print(f"{event_id = } {station_id = }")
+                        yield event_id + "_" + station_id, {
+                            "event_id": event_id,
+                            "station_id": station_id,
+                            "waveform": station[:],
+                        }