Datasets:

DanielShunom

/

ubiquitin-l1-hydrolase-bioactivity

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 7 new columns ({'molecule_chembl_id', 'NumHDonors', 'NumHAcceptors', 'canonical_smiles', 'MW', 'bioactivity_class', 'LogP'}) and 881 missing columns ({'PubchemFP191', 'PubchemFP241', 'PubchemFP341', 'PubchemFP356', 'PubchemFP113', 'PubchemFP690', 'PubchemFP305', 'PubchemFP418', 'PubchemFP472', 'PubchemFP275', 'PubchemFP518', 'PubchemFP18', 'PubchemFP74', 'PubchemFP551', 'PubchemFP541', 'PubchemFP568', 'PubchemFP378', 'PubchemFP334', 'PubchemFP590', 'PubchemFP742', 'PubchemFP419', 'PubchemFP167', 'PubchemFP145', 'PubchemFP537', 'PubchemFP781', 'PubchemFP493', 'PubchemFP138', 'PubchemFP556', 'PubchemFP112', 'PubchemFP593', 'PubchemFP318', 'PubchemFP304', 'PubchemFP282', 'PubchemFP409', 'PubchemFP802', 'PubchemFP80', 'PubchemFP675', 'PubchemFP454', 'PubchemFP480', 'PubchemFP310', 'PubchemFP476', 'PubchemFP386', 'PubchemFP11', 'PubchemFP343', 'PubchemFP93', 'PubchemFP863', 'PubchemFP865', 'PubchemFP166', 'PubchemFP129', 'PubchemFP817', 'PubchemFP326', 'PubchemFP149', 'PubchemFP733', 'PubchemFP706', 'PubchemFP586', 'PubchemFP792', 'PubchemFP223', 'PubchemFP370', 'PubchemFP604', 'PubchemFP391', 'PubchemFP281', 'PubchemFP815', 'PubchemFP81', 'PubchemFP165', 'PubchemFP415', 'PubchemFP95', 'PubchemFP203', 'PubchemFP211', 'PubchemFP277', 'PubchemFP861', 'PubchemFP805', 'PubchemFP243', 'PubchemFP132', 'PubchemFP363', 'PubchemFP547', 'PubchemFP76', 'PubchemFP543', 'PubchemFP524', 'PubchemFP3', 'PubchemFP103', 'PubchemFP844', 'PubchemFP33', 'PubchemFP855', 'PubchemFP673', 'PubchemFP306', 'PubchemFP176', 'PubchemFP743', 'PubchemFP5', 'PubchemFP745', 'PubchemFP158', 'PubchemFP316', 'PubchemFP484', 'PubchemFP499', 'PubchemFP498', 'Pubchem
...
chemFP622', 'PubchemFP184', 'PubchemFP853', 'PubchemFP250', 'PubchemFP331', 'PubchemFP171', 'PubchemFP375', 'PubchemFP396', 'PubchemFP747', 'PubchemFP522', 'PubchemFP487', 'PubchemFP714', 'PubchemFP350', 'PubchemFP583', 'PubchemFP558', 'PubchemFP574', 'PubchemFP385', 'PubchemFP687', 'PubchemFP572', 'PubchemFP533', 'PubchemFP233', 'PubchemFP60', 'PubchemFP420', 'PubchemFP649', 'PubchemFP359', 'PubchemFP616', 'PubchemFP548', 'PubchemFP397', 'PubchemFP528', 'PubchemFP647', 'PubchemFP740', 'PubchemFP570', 'PubchemFP674', 'PubchemFP232', 'PubchemFP59', 'PubchemFP254', 'PubchemFP753', 'PubchemFP90', 'PubchemFP878', 'PubchemFP49', 'PubchemFP57', 'PubchemFP66', 'PubchemFP352', 'PubchemFP437', 'PubchemFP588', 'PubchemFP342', 'PubchemFP795', 'PubchemFP0', 'PubchemFP613', 'PubchemFP287', 'PubchemFP295', 'PubchemFP377', 'PubchemFP660', 'PubchemFP188', 'PubchemFP851', 'PubchemFP852', 'PubchemFP58', 'PubchemFP860', 'PubchemFP535', 'PubchemFP381', 'PubchemFP637', 'PubchemFP725', 'PubchemFP786', 'PubchemFP520', 'PubchemFP442', 'PubchemFP4', 'PubchemFP459', 'PubchemFP596', 'PubchemFP351', 'PubchemFP193', 'PubchemFP552', 'PubchemFP44', 'PubchemFP727', 'PubchemFP179', 'PubchemFP843', 'PubchemFP592', 'PubchemFP809', 'PubchemFP189', 'PubchemFP641', 'PubchemFP741', 'PubchemFP658', 'PubchemFP99', 'PubchemFP629', 'PubchemFP808', 'PubchemFP666', 'PubchemFP290', 'PubchemFP671', 'PubchemFP87', 'PubchemFP45', 'PubchemFP160', 'PubchemFP234', 'PubchemFP763', 'PubchemFP471', 'PubchemFP446', 'PubchemFP286'}).

This happened while the csv dataset builder was generating data using

hf://datasets/DanielShunom/ubiquitin-l1-hydrolase-bioactivity/UBQTN_processed_allBioactivity.csv (at revision f960ca47b2a3d802c43851725f73d8c0b81b945e)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              molecule_chembl_id: string
              canonical_smiles: string
              bioactivity_class: string
              MW: double
              LogP: double
              NumHDonors: double
              NumHAcceptors: double
              pIC50: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1238
              to
              {'PubchemFP0': Value(dtype='int64', id=None), 'PubchemFP1': Value(dtype='int64', id=None), 'PubchemFP2': Value(dtype='int64', id=None), 'PubchemFP3': Value(dtype='int64', id=None), 'PubchemFP4': Value(dtype='int64', id=None), 'PubchemFP5': Value(dtype='int64', id=None), 'PubchemFP6': Value(dtype='int64', id=None), 'PubchemFP7': Value(dtype='int64', id=None), 'PubchemFP8': Value(dtype='int64', id=None), 'PubchemFP9': Value(dtype='int64', id=None), 'PubchemFP10': Value(dtype='int64', id=None), 'PubchemFP11': Value(dtype='int64', id=None), 'PubchemFP12': Value(dtype='int64', id=None), 'PubchemFP13': Value(dtype='int64', id=None), 'PubchemFP14': Value(dtype='int64', id=None), 'PubchemFP15': Value(dtype='int64', id=None), 'PubchemFP16': Value(dtype='int64', id=None), 'PubchemFP17': Value(dtype='int64', id=None), 'PubchemFP18': Value(dtype='int64', id=None), 'PubchemFP19': Value(dtype='int64', id=None), 'PubchemFP20': Value(dtype='int64', id=None), 'PubchemFP21': Value(dtype='int64', id=None), 'PubchemFP22': Value(dtype='int64', id=None), 'PubchemFP23': Value(dtype='int64', id=None), 'PubchemFP24': Value(dtype='int64', id=None), 'PubchemFP25': Value(dtype='int64', id=None), 'PubchemFP26': Value(dtype='int64', id=None), 'PubchemFP27': Value(dtype='int64', id=None), 'PubchemFP28': Value(dtype='int64', id=None), 'PubchemFP29': Value(dtype='int64', id=None), 'PubchemFP30': Value(dtype='int64', id=None), 'PubchemFP31': Value(dtype='int64', id=None), 'PubchemFP32': Value(dtype='int64', i
              ...
              , 'PubchemFP850': Value(dtype='int64', id=None), 'PubchemFP851': Value(dtype='int64', id=None), 'PubchemFP852': Value(dtype='int64', id=None), 'PubchemFP853': Value(dtype='int64', id=None), 'PubchemFP854': Value(dtype='int64', id=None), 'PubchemFP855': Value(dtype='int64', id=None), 'PubchemFP856': Value(dtype='int64', id=None), 'PubchemFP857': Value(dtype='int64', id=None), 'PubchemFP858': Value(dtype='int64', id=None), 'PubchemFP859': Value(dtype='int64', id=None), 'PubchemFP860': Value(dtype='int64', id=None), 'PubchemFP861': Value(dtype='int64', id=None), 'PubchemFP862': Value(dtype='int64', id=None), 'PubchemFP863': Value(dtype='int64', id=None), 'PubchemFP864': Value(dtype='int64', id=None), 'PubchemFP865': Value(dtype='int64', id=None), 'PubchemFP866': Value(dtype='int64', id=None), 'PubchemFP867': Value(dtype='int64', id=None), 'PubchemFP868': Value(dtype='int64', id=None), 'PubchemFP869': Value(dtype='int64', id=None), 'PubchemFP870': Value(dtype='int64', id=None), 'PubchemFP871': Value(dtype='int64', id=None), 'PubchemFP872': Value(dtype='int64', id=None), 'PubchemFP873': Value(dtype='int64', id=None), 'PubchemFP874': Value(dtype='int64', id=None), 'PubchemFP875': Value(dtype='int64', id=None), 'PubchemFP876': Value(dtype='int64', id=None), 'PubchemFP877': Value(dtype='int64', id=None), 'PubchemFP878': Value(dtype='int64', id=None), 'PubchemFP879': Value(dtype='int64', id=None), 'PubchemFP880': Value(dtype='int64', id=None), 'pIC50': Value(dtype='float64', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1417, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1049, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 7 new columns ({'molecule_chembl_id', 'NumHDonors', 'NumHAcceptors', 'canonical_smiles', 'MW', 'bioactivity_class', 'LogP'}) and 881 missing columns ({'PubchemFP191', 'PubchemFP241', 'PubchemFP341', 'PubchemFP356', 'PubchemFP113', 'PubchemFP690', 'PubchemFP305', 'PubchemFP418', 'PubchemFP472', 'PubchemFP275', 'PubchemFP518', 'PubchemFP18', 'PubchemFP74', 'PubchemFP551', 'PubchemFP541', 'PubchemFP568', 'PubchemFP378', 'PubchemFP334', 'PubchemFP590', 'PubchemFP742', 'PubchemFP419', 'PubchemFP167', 'PubchemFP145', 'PubchemFP537', 'PubchemFP781', 'PubchemFP493', 'PubchemFP138', 'PubchemFP556', 'PubchemFP112', 'PubchemFP593', 'PubchemFP318', 'PubchemFP304', 'PubchemFP282', 'PubchemFP409', 'PubchemFP802', 'PubchemFP80', 'PubchemFP675', 'PubchemFP454', 'PubchemFP480', 'PubchemFP310', 'PubchemFP476', 'PubchemFP386', 'PubchemFP11', 'PubchemFP343', 'PubchemFP93', 'PubchemFP863', 'PubchemFP865', 'PubchemFP166', 'PubchemFP129', 'PubchemFP817', 'PubchemFP326', 'PubchemFP149', 'PubchemFP733', 'PubchemFP706', 'PubchemFP586', 'PubchemFP792', 'PubchemFP223', 'PubchemFP370', 'PubchemFP604', 'PubchemFP391', 'PubchemFP281', 'PubchemFP815', 'PubchemFP81', 'PubchemFP165', 'PubchemFP415', 'PubchemFP95', 'PubchemFP203', 'PubchemFP211', 'PubchemFP277', 'PubchemFP861', 'PubchemFP805', 'PubchemFP243', 'PubchemFP132', 'PubchemFP363', 'PubchemFP547', 'PubchemFP76', 'PubchemFP543', 'PubchemFP524', 'PubchemFP3', 'PubchemFP103', 'PubchemFP844', 'PubchemFP33', 'PubchemFP855', 'PubchemFP673', 'PubchemFP306', 'PubchemFP176', 'PubchemFP743', 'PubchemFP5', 'PubchemFP745', 'PubchemFP158', 'PubchemFP316', 'PubchemFP484', 'PubchemFP499', 'PubchemFP498', 'Pubchem
              ...
              chemFP622', 'PubchemFP184', 'PubchemFP853', 'PubchemFP250', 'PubchemFP331', 'PubchemFP171', 'PubchemFP375', 'PubchemFP396', 'PubchemFP747', 'PubchemFP522', 'PubchemFP487', 'PubchemFP714', 'PubchemFP350', 'PubchemFP583', 'PubchemFP558', 'PubchemFP574', 'PubchemFP385', 'PubchemFP687', 'PubchemFP572', 'PubchemFP533', 'PubchemFP233', 'PubchemFP60', 'PubchemFP420', 'PubchemFP649', 'PubchemFP359', 'PubchemFP616', 'PubchemFP548', 'PubchemFP397', 'PubchemFP528', 'PubchemFP647', 'PubchemFP740', 'PubchemFP570', 'PubchemFP674', 'PubchemFP232', 'PubchemFP59', 'PubchemFP254', 'PubchemFP753', 'PubchemFP90', 'PubchemFP878', 'PubchemFP49', 'PubchemFP57', 'PubchemFP66', 'PubchemFP352', 'PubchemFP437', 'PubchemFP588', 'PubchemFP342', 'PubchemFP795', 'PubchemFP0', 'PubchemFP613', 'PubchemFP287', 'PubchemFP295', 'PubchemFP377', 'PubchemFP660', 'PubchemFP188', 'PubchemFP851', 'PubchemFP852', 'PubchemFP58', 'PubchemFP860', 'PubchemFP535', 'PubchemFP381', 'PubchemFP637', 'PubchemFP725', 'PubchemFP786', 'PubchemFP520', 'PubchemFP442', 'PubchemFP4', 'PubchemFP459', 'PubchemFP596', 'PubchemFP351', 'PubchemFP193', 'PubchemFP552', 'PubchemFP44', 'PubchemFP727', 'PubchemFP179', 'PubchemFP843', 'PubchemFP592', 'PubchemFP809', 'PubchemFP189', 'PubchemFP641', 'PubchemFP741', 'PubchemFP658', 'PubchemFP99', 'PubchemFP629', 'PubchemFP808', 'PubchemFP666', 'PubchemFP290', 'PubchemFP671', 'PubchemFP87', 'PubchemFP45', 'PubchemFP160', 'PubchemFP234', 'PubchemFP763', 'PubchemFP471', 'PubchemFP446', 'PubchemFP286'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/DanielShunom/ubiquitin-l1-hydrolase-bioactivity/UBQTN_processed_allBioactivity.csv (at revision f960ca47b2a3d802c43851725f73d8c0b81b945e)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)