Hugging Face's logo

Datasets:
MahmoodLab
/
hest-bench

Modalities:
Image
Text
Formats:
csv
Size:
< 1K
Libraries:
Datasets
Dask
Dataset card Viewer Files Community
1
pauldoucet commited on
Commit
d04c8a0
•
1 Parent(s): 0e29b21

Upload folder using huggingface_hub

Browse files
Files changed (18) hide show
  1. .gitattributes +4 -0
  2. COAD/adata/TENX111.h5ad +3 -0
  3. COAD/adata/TENX147.h5ad +3 -0
  4. COAD/adata/TENX148.h5ad +3 -0
  5. COAD/adata/TENX149.h5ad +3 -0
  6. COAD/patches/TENX111.h5 +3 -0
  7. COAD/patches/TENX147.h5 +3 -0
  8. COAD/patches/TENX148.h5 +3 -0
  9. COAD/patches/TENX149.h5 +3 -0
  10. COAD/patches_vis/TENX111.png +3 -0
  11. COAD/patches_vis/TENX147.png +3 -0
  12. COAD/patches_vis/TENX148.png +3 -0
  13. COAD/patches_vis/TENX149.png +3 -0
  14. COAD/splits/test_0.csv +4 -0
  15. COAD/splits/test_1.csv +2 -0
  16. COAD/splits/train_0.csv +2 -0
  17. COAD/splits/train_1.csv +4 -0
  18. COAD/var_50genes.json +1 -0
.gitattributes CHANGED
@@ -127,3 +127,7 @@ READ/adata/ZEN48.h5ad filter=lfs diff=lfs merge=lfs -text
127
  READ/adata/ZEN49.h5ad filter=lfs diff=lfs merge=lfs -text
128
  SKCM/adata/TENX115.h5ad filter=lfs diff=lfs merge=lfs -text
129
  SKCM/adata/TENX117.h5ad filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
127
  READ/adata/ZEN49.h5ad filter=lfs diff=lfs merge=lfs -text
128
  SKCM/adata/TENX115.h5ad filter=lfs diff=lfs merge=lfs -text
129
  SKCM/adata/TENX117.h5ad filter=lfs diff=lfs merge=lfs -text
130
+ COAD/adata/TENX111.h5ad filter=lfs diff=lfs merge=lfs -text
131
+ COAD/adata/TENX147.h5ad filter=lfs diff=lfs merge=lfs -text
132
+ COAD/adata/TENX148.h5ad filter=lfs diff=lfs merge=lfs -text
133
+ COAD/adata/TENX149.h5ad filter=lfs diff=lfs merge=lfs -text
COAD/adata/TENX111.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3f7d661dfd01b6e5ff0c50ed33c42c3ecc016b9c6ee48ea4fb933da2d9b69ddd
3
+ size 9734131
COAD/adata/TENX147.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6fcc76df55b61c46e51fa7440d047da3930689f9a11bedd0ec493cbae052e31e
3
+ size 7947716
COAD/adata/TENX148.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1965dd1637efe4bcac72fbdb03d4d7b80060b33746b84ff0a1b556a966cda932
3
+ size 7580926
COAD/adata/TENX149.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c4e4189474973b35a20c30d470a45cc4b91231a185e637a0ce7e5b412df74349
3
+ size 7728632
COAD/patches/TENX111.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2b55b02a95bb207194402cf408643011bcc27a3df92c80e03faeb4cf5d2c491b
3
+ size 786498800
COAD/patches/TENX147.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:60db06f90d56f092e244b697e5391a37ab42b581c437c11e458ff059c63c227d
3
+ size 529126536
COAD/patches/TENX148.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2bd7394a3c3481f8c7c6ff429e2a4310f26d608361f93dcac24c7032e1a04d70
3
+ size 547397752
COAD/patches/TENX149.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a17254609041016e0459da70993bb3df7d23288b5d2c195b03f4d2cb92f2ae38
3
+ size 560565320
COAD/patches_vis/TENX111.png ADDED

Git LFS Details

  • SHA256: 095cadcbc663ba74eb5b0dcbe0c12d64b209a534773f1a5deec13ab15428e92d
  • Pointer size: 132 Bytes
  • Size of remote file: 3.32 MB
COAD/patches_vis/TENX147.png ADDED

Git LFS Details

  • SHA256: 2ef5136e14ea424da6277b32453d19d4b8400898e58f6bbb6da285374691be11
  • Pointer size: 132 Bytes
  • Size of remote file: 4.95 MB
COAD/patches_vis/TENX148.png ADDED

Git LFS Details

  • SHA256: bd8811caf9855046417c909f4e8ed536958231fc141b543dbd96bac58f1a12a0
  • Pointer size: 132 Bytes
  • Size of remote file: 4.56 MB
COAD/patches_vis/TENX149.png ADDED

Git LFS Details

  • SHA256: dd5c894e0498685ef644aab2ed3154f54037760666e1f96be5163367de27c82b
  • Pointer size: 132 Bytes
  • Size of remote file: 5.07 MB
COAD/splits/test_0.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ sample_id,patches_path,expr_path
2
+ TENX149,patches/TENX149.h5,adata/TENX149.h5ad
3
+ TENX148,patches/TENX148.h5,adata/TENX148.h5ad
4
+ TENX147,patches/TENX147.h5,adata/TENX147.h5ad
COAD/splits/test_1.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ sample_id,patches_path,expr_path
2
+ TENX111,patches/TENX111.h5,adata/TENX111.h5ad
COAD/splits/train_0.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ sample_id,patches_path,expr_path
2
+ TENX111,patches/TENX111.h5,adata/TENX111.h5ad
COAD/splits/train_1.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ sample_id,patches_path,expr_path
2
+ TENX149,patches/TENX149.h5,adata/TENX149.h5ad
3
+ TENX148,patches/TENX148.h5,adata/TENX148.h5ad
4
+ TENX147,patches/TENX147.h5,adata/TENX147.h5ad
COAD/var_50genes.json ADDED
@@ -0,0 +1 @@
 
 
1
+ {"genes": ["AQP8", "AREG", "BANK1", "CA1", "CA4", "CALB2", "CCL20", "CCR7", "CD177", "CEACAM6", "CEACAM7", "CHGA", "CHGB", "CHI3L2", "CLCA1", "CLCA4", "COL11A1", "CTSE", "CXCL10", "CXCL13", "DMBT1", "DUOX2", "FCRL1", "GATA2", "GCG", "GUCA2A", "GUCA2B", "HEPACAM2", "IL1B", "INSL5", "ITLN1", "LCN2", "MMP1", "MMP3", "MS4A1", "MS4A12", "NXPE4", "OLFM4", "OTOP2", "PI3", "PRPH", "RETNLB", "SCG2", "SCGN", "SLC26A3", "SPIB", "TCL1A", "TMIGD1", "TYMS", "UGT2B17"]}