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0 15 N-acylhydrazone chemical N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes TITLE
30 39 influenza taxonomy_domain N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes TITLE
40 45 virus taxonomy_domain N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes TITLE
46 48 PA protein N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes TITLE
49 61 endonuclease protein_type N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes TITLE
0 9 Influenza taxonomy_domain Influenza virus PA endonuclease has recently emerged as an attractive target for the development of novel antiviral therapeutics. ABSTRACT
10 15 virus taxonomy_domain Influenza virus PA endonuclease has recently emerged as an attractive target for the development of novel antiviral therapeutics. ABSTRACT
16 18 PA protein Influenza virus PA endonuclease has recently emerged as an attractive target for the development of novel antiviral therapeutics. ABSTRACT
19 31 endonuclease protein_type Influenza virus PA endonuclease has recently emerged as an attractive target for the development of novel antiviral therapeutics. ABSTRACT
46 50 Mg2+ chemical This is an enzyme with divalent metal ion(s) (Mg2+ or Mn2+) in its catalytic site: chelation of these metal cofactors is an attractive strategy to inhibit enzymatic activity. ABSTRACT
54 58 Mn2+ chemical This is an enzyme with divalent metal ion(s) (Mg2+ or Mn2+) in its catalytic site: chelation of these metal cofactors is an attractive strategy to inhibit enzymatic activity. ABSTRACT
67 81 catalytic site site This is an enzyme with divalent metal ion(s) (Mg2+ or Mn2+) in its catalytic site: chelation of these metal cofactors is an attractive strategy to inhibit enzymatic activity. ABSTRACT
83 92 chelation bond_interaction This is an enzyme with divalent metal ion(s) (Mg2+ or Mn2+) in its catalytic site: chelation of these metal cofactors is an attractive strategy to inhibit enzymatic activity. ABSTRACT
43 59 N-acylhydrazones chemical Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
66 81 enzymatic assay experimental_method Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
87 89 PA protein Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
90 94 Nter structure_element Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
95 107 endonuclease protein_type Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
123 163 cell-based influenza vRNP reconstitution experimental_method Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
168 186 virus yield assays experimental_method Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. ABSTRACT
8 24 N-acylhydrazones chemical Several N-acylhydrazones were found to have promising anti-influenza activity in the low micromolar concentration range and good selectivity. ABSTRACT
59 68 influenza taxonomy_domain Several N-acylhydrazones were found to have promising anti-influenza activity in the low micromolar concentration range and good selectivity. ABSTRACT
0 29 Computational docking studies experimental_method Computational docking studies are carried on to investigate the key features that determine inhibition of the endonuclease enzyme by N-acylhydrazones. ABSTRACT
110 122 endonuclease protein_type Computational docking studies are carried on to investigate the key features that determine inhibition of the endonuclease enzyme by N-acylhydrazones. ABSTRACT
133 149 N-acylhydrazones chemical Computational docking studies are carried on to investigate the key features that determine inhibition of the endonuclease enzyme by N-acylhydrazones. ABSTRACT
31 48 crystal structure evidence Moreover, we here describe the crystal structure of PA-Nter in complex with one of the most active inhibitors, revealing its interactions within the protein’s active site. ABSTRACT
52 54 PA protein Moreover, we here describe the crystal structure of PA-Nter in complex with one of the most active inhibitors, revealing its interactions within the protein’s active site. ABSTRACT
55 59 Nter structure_element Moreover, we here describe the crystal structure of PA-Nter in complex with one of the most active inhibitors, revealing its interactions within the protein’s active site. ABSTRACT
60 75 in complex with protein_state Moreover, we here describe the crystal structure of PA-Nter in complex with one of the most active inhibitors, revealing its interactions within the protein’s active site. ABSTRACT
159 170 active site site Moreover, we here describe the crystal structure of PA-Nter in complex with one of the most active inhibitors, revealing its interactions within the protein’s active site. ABSTRACT
0 9 Influenza taxonomy_domain Influenza virus is an enveloped virus with a segmented negative-oriented single-stranded RNA genome, belonging to the Orthomyxoviridae. INTRO
10 15 virus taxonomy_domain Influenza virus is an enveloped virus with a segmented negative-oriented single-stranded RNA genome, belonging to the Orthomyxoviridae. INTRO
22 37 enveloped virus taxonomy_domain Influenza virus is an enveloped virus with a segmented negative-oriented single-stranded RNA genome, belonging to the Orthomyxoviridae. INTRO
55 92 negative-oriented single-stranded RNA chemical Influenza virus is an enveloped virus with a segmented negative-oriented single-stranded RNA genome, belonging to the Orthomyxoviridae. INTRO
118 134 Orthomyxoviridae taxonomy_domain Influenza virus is an enveloped virus with a segmented negative-oriented single-stranded RNA genome, belonging to the Orthomyxoviridae. INTRO
9 20 influenza A taxonomy_domain Seasonal influenza A and B viruses affect each year approximately 510% of the adult and 2030% of the paediatric population, and there is a permanent risk of sudden influenza pandemics, such as the notorious ‘Spanish flu’ in 1918 and the swine-origin H1N1 pandemic in 2009. INTRO
25 26 B taxonomy_domain Seasonal influenza A and B viruses affect each year approximately 510% of the adult and 2030% of the paediatric population, and there is a permanent risk of sudden influenza pandemics, such as the notorious ‘Spanish flu’ in 1918 and the swine-origin H1N1 pandemic in 2009. INTRO
27 34 viruses taxonomy_domain Seasonal influenza A and B viruses affect each year approximately 510% of the adult and 2030% of the paediatric population, and there is a permanent risk of sudden influenza pandemics, such as the notorious ‘Spanish flu’ in 1918 and the swine-origin H1N1 pandemic in 2009. INTRO
166 175 influenza taxonomy_domain Seasonal influenza A and B viruses affect each year approximately 510% of the adult and 2030% of the paediatric population, and there is a permanent risk of sudden influenza pandemics, such as the notorious ‘Spanish flu’ in 1918 and the swine-origin H1N1 pandemic in 2009. INTRO
252 256 H1N1 species Seasonal influenza A and B viruses affect each year approximately 510% of the adult and 2030% of the paediatric population, and there is a permanent risk of sudden influenza pandemics, such as the notorious ‘Spanish flu’ in 1918 and the swine-origin H1N1 pandemic in 2009. INTRO
20 29 influenza taxonomy_domain Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
30 35 virus taxonomy_domain Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
71 76 viral taxonomy_domain Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
77 91 M2 ion-channel protein_type Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
93 103 amantadine chemical Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
108 119 rimantadine chemical Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
131 136 viral taxonomy_domain Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
137 150 neuraminidase protein_type Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
152 161 zanamivir chemical Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
166 177 oseltamivir chemical Two classes of anti-influenza virus drugs are available, acting on the viral M2 ion-channel (amantadine and rimantadine) or on the viral neuraminidase (zanamivir and oseltamivir). INTRO
4 6 M2 protein_type The M2 inhibitors have limited clinical utility due to their central nervous system side effects and widespread resistance, as in the case of the 2009 pandemic H1N1 virus; resistance is also a growing concern for oseltamivir. INTRO
160 164 H1N1 species The M2 inhibitors have limited clinical utility due to their central nervous system side effects and widespread resistance, as in the case of the 2009 pandemic H1N1 virus; resistance is also a growing concern for oseltamivir. INTRO
165 170 virus taxonomy_domain The M2 inhibitors have limited clinical utility due to their central nervous system side effects and widespread resistance, as in the case of the 2009 pandemic H1N1 virus; resistance is also a growing concern for oseltamivir. INTRO
213 224 oseltamivir chemical The M2 inhibitors have limited clinical utility due to their central nervous system side effects and widespread resistance, as in the case of the 2009 pandemic H1N1 virus; resistance is also a growing concern for oseltamivir. INTRO
4 13 influenza taxonomy_domain The influenza virus polymerase complex is composed of three subunits: PB1, PB2 and PA. INTRO
14 19 virus taxonomy_domain The influenza virus polymerase complex is composed of three subunits: PB1, PB2 and PA. INTRO
20 30 polymerase protein_type The influenza virus polymerase complex is composed of three subunits: PB1, PB2 and PA. INTRO
70 73 PB1 protein The influenza virus polymerase complex is composed of three subunits: PB1, PB2 and PA. INTRO
75 78 PB2 protein The influenza virus polymerase complex is composed of three subunits: PB1, PB2 and PA. INTRO
83 85 PA protein The influenza virus polymerase complex is composed of three subunits: PB1, PB2 and PA. INTRO
4 6 PA protein The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
7 14 subunit structure_element The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
44 56 endonuclease protein_type The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
71 74 PB2 protein The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
75 82 subunit structure_element The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
125 136 capped RNAs chemical The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
155 158 RNA chemical The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
189 192 PB1 protein The PA subunit performs the ‘cap-snatching’ endonuclease reaction, the PB2 subunit is responsible for initial binding of the capped RNAs, while the actual RNA synthesis is performed by the PB1 protein. INTRO
30 35 viral taxonomy_domain Given its crucial role in the viral life cycle, the influenza virus polymerase is widely recognized as a superior target for antiviral drug development and, in particular, inhibition of the PA endonuclease has deserved much attention in recent years. INTRO
52 61 influenza taxonomy_domain Given its crucial role in the viral life cycle, the influenza virus polymerase is widely recognized as a superior target for antiviral drug development and, in particular, inhibition of the PA endonuclease has deserved much attention in recent years. INTRO
62 67 virus taxonomy_domain Given its crucial role in the viral life cycle, the influenza virus polymerase is widely recognized as a superior target for antiviral drug development and, in particular, inhibition of the PA endonuclease has deserved much attention in recent years. INTRO
68 78 polymerase protein_type Given its crucial role in the viral life cycle, the influenza virus polymerase is widely recognized as a superior target for antiviral drug development and, in particular, inhibition of the PA endonuclease has deserved much attention in recent years. INTRO
190 192 PA protein Given its crucial role in the viral life cycle, the influenza virus polymerase is widely recognized as a superior target for antiviral drug development and, in particular, inhibition of the PA endonuclease has deserved much attention in recent years. INTRO
193 205 endonuclease protein_type Given its crucial role in the viral life cycle, the influenza virus polymerase is widely recognized as a superior target for antiviral drug development and, in particular, inhibition of the PA endonuclease has deserved much attention in recent years. INTRO
4 16 endonuclease protein_type The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
17 31 catalytic site site The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
47 64 N-terminal domain structure_element The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
68 70 PA protein The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
72 74 PA protein The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
75 79 Nter structure_element The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
90 95 1~195 residue_range The endonuclease catalytic site resides in the N-terminal domain of PA (PA-Nter; residues 1~195). INTRO
15 24 histidine residue_name It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
26 31 His41 residue_name_number It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
56 74 strictly conserved protein_state It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
75 81 acidic protein_state It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
92 97 Glu80 residue_name_number It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
99 105 Asp108 residue_name_number It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
107 113 Glu119 residue_name_number It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
122 132 coordinate bond_interaction It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
148 154 Ile120 residue_name_number It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
175 184 manganese chemical It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
188 197 magnesium chemical It comprises a histidine (His41) and a cluster of three strictly conserved acidic residues (Glu80, Asp108, Glu119), which coordinate (together with Ile120) one, two, or three manganese or magnesium ions. INTRO
41 45 Mg2+ chemical Since the intracellular concentration of Mg2+ is at least 1000-fold higher than that of Mn2+, magnesium may be more biologically relevant. INTRO
88 93 Mn2+, chemical Since the intracellular concentration of Mg2+ is at least 1000-fold higher than that of Mn2+, magnesium may be more biologically relevant. INTRO
94 103 magnesium chemical Since the intracellular concentration of Mg2+ is at least 1000-fold higher than that of Mn2+, magnesium may be more biologically relevant. INTRO
70 81 active site site A controversy about number and type of metal ions exists also for the active site of HIV-1 integrase. INTRO
85 90 HIV-1 species A controversy about number and type of metal ions exists also for the active site of HIV-1 integrase. INTRO
91 100 integrase protein_type A controversy about number and type of metal ions exists also for the active site of HIV-1 integrase. INTRO
0 5 HIV-1 species HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
6 15 integrase protein_type HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
113 118 metal chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
134 139 viral taxonomy_domain HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
168 170 PA protein HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
242 251 influenza taxonomy_domain HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
252 264 endonuclease protein_type HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
296 318 2,4-dioxobutanoic acid chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
332 341 flutimide chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
363 384 2-hydroxyphenyl amide chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
409 423 tetramic acids chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
425 449 5-hydroxypyrimidin-4-one chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
463 474 marchantins chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
479 488 green tea taxonomy_domain HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
489 498 catechins chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
505 531 epigallocatechin-3-gallate chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
533 537 EGCG chemical HIV-1 integrase inhibitors are a paradigm for the innovative drug concept that is based on coordination with the metal cofactor(s) of viral enzymes: similarly, several PA-binding agents with metal-chelating properties have been identified as influenza endonuclease inhibitors (Fig. 1), including 2,4-dioxobutanoic acid derivatives, flutimide and its derivatives, 2-hydroxyphenyl amide derivatives, as well as tetramic acids, 5-hydroxypyrimidin-4-one derivatives, marchantins and green tea catechins, like epigallocatechin-3-gallate (EGCG, Fig. 1). INTRO
102 104 PA protein In recent years, we focused our research on chemical scaffolds that are able to chelate metal ions of PA-Nter, resulting in inhibition of influenza virus replication. INTRO
105 109 Nter structure_element In recent years, we focused our research on chemical scaffolds that are able to chelate metal ions of PA-Nter, resulting in inhibition of influenza virus replication. INTRO
138 147 influenza taxonomy_domain In recent years, we focused our research on chemical scaffolds that are able to chelate metal ions of PA-Nter, resulting in inhibition of influenza virus replication. INTRO
148 153 virus taxonomy_domain In recent years, we focused our research on chemical scaffolds that are able to chelate metal ions of PA-Nter, resulting in inhibition of influenza virus replication. INTRO
0 16 N-acylhydrazones chemical N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
80 88 spectrum evidence N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
140 143 HIV taxonomy_domain N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
145 156 hepatitis A taxonomy_domain N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
158 166 vaccinia taxonomy_domain N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
171 180 influenza taxonomy_domain N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
181 186 virus taxonomy_domain N-acylhydrazones represent an appealing class of chelating ligands with a broad spectrum of biological activities, such as activity against HIV, hepatitis A, vaccinia and influenza virus. INTRO
70 86 N-acylhydrazones chemical In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
117 132 enzymatic assay experimental_method In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
138 140 PA protein In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
141 145 Nter structure_element In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
146 158 endonuclease protein_type In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
173 239 cell-based influenza viral ribonucleoprotein (vRNP) reconstitution experimental_method In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
244 262 virus yield assays experimental_method In the present work, we report the biological activity of a series of N-acylhydrazones (Fig. 2), as determined in an enzymatic assay with PA-Nter endonuclease as well as in cell-based influenza viral ribonucleoprotein (vRNP) reconstitution and virus yield assays. INTRO
8 24 N-acylhydrazones chemical Several N-acylhydrazones were found to have promising anti-influenza activity with 50% effective concentration values (EC50) in the range of 320 μM and good selectivity (Table 1 and Fig. 3). INTRO
59 68 influenza taxonomy_domain Several N-acylhydrazones were found to have promising anti-influenza activity with 50% effective concentration values (EC50) in the range of 320 μM and good selectivity (Table 1 and Fig. 3). INTRO
83 110 50% effective concentration evidence Several N-acylhydrazones were found to have promising anti-influenza activity with 50% effective concentration values (EC50) in the range of 320 μM and good selectivity (Table 1 and Fig. 3). INTRO
119 123 EC50 evidence Several N-acylhydrazones were found to have promising anti-influenza activity with 50% effective concentration values (EC50) in the range of 320 μM and good selectivity (Table 1 and Fig. 3). INTRO
0 29 Computational docking studies experimental_method Computational docking studies of two candidate ligands in the PA-Nter active site gave information about the features that could determine inhibition of endonuclease activity. INTRO
62 64 PA protein Computational docking studies of two candidate ligands in the PA-Nter active site gave information about the features that could determine inhibition of endonuclease activity. INTRO
65 69 Nter structure_element Computational docking studies of two candidate ligands in the PA-Nter active site gave information about the features that could determine inhibition of endonuclease activity. INTRO
70 81 active site site Computational docking studies of two candidate ligands in the PA-Nter active site gave information about the features that could determine inhibition of endonuclease activity. INTRO
153 165 endonuclease protein_type Computational docking studies of two candidate ligands in the PA-Nter active site gave information about the features that could determine inhibition of endonuclease activity. INTRO
26 49 X-ray crystal structure evidence Moreover, we describe the X-ray crystal structure of PA-Nter in complex with one of the most active inhibitors. INTRO
53 55 PA protein Moreover, we describe the X-ray crystal structure of PA-Nter in complex with one of the most active inhibitors. INTRO
56 60 Nter structure_element Moreover, we describe the X-ray crystal structure of PA-Nter in complex with one of the most active inhibitors. INTRO
61 76 in complex with protein_state Moreover, we describe the X-ray crystal structure of PA-Nter in complex with one of the most active inhibitors. INTRO
0 16 N-acylhydrazones chemical N-acylhydrazones 127 (Fig. 2) were prepared in high yields by following literature methods (Fig. 2A); they were characterized by spectroscopic tools, mass spectrometry and elemental analysis. RESULTS
17 21 127 chemical N-acylhydrazones 127 (Fig. 2) were prepared in high yields by following literature methods (Fig. 2A); they were characterized by spectroscopic tools, mass spectrometry and elemental analysis. RESULTS
151 168 mass spectrometry experimental_method N-acylhydrazones 127 (Fig. 2) were prepared in high yields by following literature methods (Fig. 2A); they were characterized by spectroscopic tools, mass spectrometry and elemental analysis. RESULTS
173 191 elemental analysis experimental_method N-acylhydrazones 127 (Fig. 2) were prepared in high yields by following literature methods (Fig. 2A); they were characterized by spectroscopic tools, mass spectrometry and elemental analysis. RESULTS
53 57 127 chemical Even if isomerism around the C = N bond is possible, 127 are present in the E form in solution, as evidenced by the chemical shift values of the HC = N and NH protons in the 1H-NMR spectrum. RESULTS
175 181 1H-NMR experimental_method Even if isomerism around the C = N bond is possible, 127 are present in the E form in solution, as evidenced by the chemical shift values of the HC = N and NH protons in the 1H-NMR spectrum. RESULTS
182 190 spectrum evidence Even if isomerism around the C = N bond is possible, 127 are present in the E form in solution, as evidenced by the chemical shift values of the HC = N and NH protons in the 1H-NMR spectrum. RESULTS
52 53 3 chemical Exceptions are represented by the alkyl-derivatives 3 and 4 (2:1 and 5:3 E:Z ratio, respectively). RESULTS
58 59 4 chemical Exceptions are represented by the alkyl-derivatives 3 and 4 (2:1 and 5:3 E:Z ratio, respectively). RESULTS
74 88 acylhydrazones chemical If R’ (Fig. 2A) is a 2-hydroxy substituted phenyl ring, the corresponding acylhydrazones can coordinate one or, depending on denticity, two metal centers (modes A and B in Fig. 4). RESULTS
93 103 coordinate bond_interaction If R’ (Fig. 2A) is a 2-hydroxy substituted phenyl ring, the corresponding acylhydrazones can coordinate one or, depending on denticity, two metal centers (modes A and B in Fig. 4). RESULTS
14 57 N’-(2,3-dihydroxybenzylidene)-semicarbazide chemical Starting from N’-(2,3-dihydroxybenzylidene)-semicarbazide (1) and its methoxy-analogue (2), we modified the acylhydrazonic substituent R” (38, 18, 19, Fig. 2A). RESULTS
59 60 1 chemical Starting from N’-(2,3-dihydroxybenzylidene)-semicarbazide (1) and its methoxy-analogue (2), we modified the acylhydrazonic substituent R” (38, 18, 19, Fig. 2A). RESULTS
88 89 2 chemical Starting from N’-(2,3-dihydroxybenzylidene)-semicarbazide (1) and its methoxy-analogue (2), we modified the acylhydrazonic substituent R” (38, 18, 19, Fig. 2A). RESULTS
139 142 38 chemical Starting from N’-(2,3-dihydroxybenzylidene)-semicarbazide (1) and its methoxy-analogue (2), we modified the acylhydrazonic substituent R” (38, 18, 19, Fig. 2A). RESULTS
144 146 18 chemical Starting from N’-(2,3-dihydroxybenzylidene)-semicarbazide (1) and its methoxy-analogue (2), we modified the acylhydrazonic substituent R” (38, 18, 19, Fig. 2A). RESULTS
148 150 19 chemical Starting from N’-(2,3-dihydroxybenzylidene)-semicarbazide (1) and its methoxy-analogue (2), we modified the acylhydrazonic substituent R” (38, 18, 19, Fig. 2A). RESULTS
3 5 18 chemical In 18 and 19, also the gallic moiety can be involved in the chelation of the metal cofactors (mode C, Fig. 4). RESULTS
10 12 19 chemical In 18 and 19, also the gallic moiety can be involved in the chelation of the metal cofactors (mode C, Fig. 4). RESULTS
23 29 gallic chemical In 18 and 19, also the gallic moiety can be involved in the chelation of the metal cofactors (mode C, Fig. 4). RESULTS
60 69 chelation bond_interaction In 18 and 19, also the gallic moiety can be involved in the chelation of the metal cofactors (mode C, Fig. 4). RESULTS
58 62 911 chemical In order to investigate the role of hydroxyl substituents 911, 1317, 2023 and 27 were also synthesized. RESULTS
64 69 1317 chemical In order to investigate the role of hydroxyl substituents 911, 1317, 2023 and 27 were also synthesized. RESULTS
71 76 2023 chemical In order to investigate the role of hydroxyl substituents 911, 1317, 2023 and 27 were also synthesized. RESULTS
81 83 27 chemical In order to investigate the role of hydroxyl substituents 911, 1317, 2023 and 27 were also synthesized. RESULTS
9 11 12 chemical Compound 12 was synthesized in order to confirm the crucial influence of the gallic moiety. RESULTS
77 83 gallic chemical Compound 12 was synthesized in order to confirm the crucial influence of the gallic moiety. RESULTS
9 11 26 chemical Finally, 26 was here considered, because it is an inhibitor of HIV RNase H, another enzyme with two magnesium ions in its active site. RESULTS
63 66 HIV taxonomy_domain Finally, 26 was here considered, because it is an inhibitor of HIV RNase H, another enzyme with two magnesium ions in its active site. RESULTS
67 74 RNase H protein Finally, 26 was here considered, because it is an inhibitor of HIV RNase H, another enzyme with two magnesium ions in its active site. RESULTS
100 109 magnesium chemical Finally, 26 was here considered, because it is an inhibitor of HIV RNase H, another enzyme with two magnesium ions in its active site. RESULTS
122 133 active site site Finally, 26 was here considered, because it is an inhibitor of HIV RNase H, another enzyme with two magnesium ions in its active site. RESULTS
37 53 N-acylhydrazones chemical Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
74 83 chelation bond_interaction Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
100 105 metal chemical Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
125 134 influenza taxonomy_domain Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
135 137 PA protein Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
138 142 Nter structure_element Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
143 154 active site site Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
226 228 19 chemical Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
230 233 H2L chemical Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
243 247 Mg2+ chemical Since the inhibitory activity of the N-acylhydrazones could be related to chelation of the divalent metal cofactor(s) in the influenza PA-Nter active site, we investigated the coordination properties of one model ligand (i.e. 19, H2L) towards Mg2+. RESULTS
99 112 triethylamine chemical Different reaction conditions were used (1:1 and 1:2 metal to ligand ratio, up to 4 equivalents of triethylamine), but in any case the same chemical species Mg(HL)24H2O was recovered and conveniently characterized. RESULTS
157 169 Mg(HL)24H2O chemical Different reaction conditions were used (1:1 and 1:2 metal to ligand ratio, up to 4 equivalents of triethylamine), but in any case the same chemical species Mg(HL)24H2O was recovered and conveniently characterized. RESULTS
37 44 d6-DMSO chemical The use of a coordinating solvent as d6-DMSO causes partial decoordination of the ligand, but the 1H-NMR spectrum in MeOD, instead, shows only the signals attributable to the complex. RESULTS
98 104 1H-NMR experimental_method The use of a coordinating solvent as d6-DMSO causes partial decoordination of the ligand, but the 1H-NMR spectrum in MeOD, instead, shows only the signals attributable to the complex. RESULTS
105 113 spectrum evidence The use of a coordinating solvent as d6-DMSO causes partial decoordination of the ligand, but the 1H-NMR spectrum in MeOD, instead, shows only the signals attributable to the complex. RESULTS
7 14 13C-NMR experimental_method In the 13C-NMR spectrum, the signal of the C = O quaternary carbon is practically unaffected by complexation, suggesting that the C = O group is weakly involved in the coordination to the metal ion. RESULTS
15 23 spectrum evidence In the 13C-NMR spectrum, the signal of the C = O quaternary carbon is practically unaffected by complexation, suggesting that the C = O group is weakly involved in the coordination to the metal ion. RESULTS
26 28 IR experimental_method This is confirmed, in the IR spectrum, by the shift of about 20 cm−1 of the C = O absorption, while a shift of 3050 cm−1 is expected when the carbonylic oxygen is tightly bound to the metal ion. RESULTS
29 37 spectrum evidence This is confirmed, in the IR spectrum, by the shift of about 20 cm−1 of the C = O absorption, while a shift of 3050 cm−1 is expected when the carbonylic oxygen is tightly bound to the metal ion. RESULTS
0 8 ESI-mass experimental_method ESI-mass spectra and elemental analysis confirmed the formula Mg(HL)24H2O. RESULTS
9 16 spectra evidence ESI-mass spectra and elemental analysis confirmed the formula Mg(HL)24H2O. RESULTS
21 39 elemental analysis experimental_method ESI-mass spectra and elemental analysis confirmed the formula Mg(HL)24H2O. RESULTS
62 74 Mg(HL)24H2O chemical ESI-mass spectra and elemental analysis confirmed the formula Mg(HL)24H2O. RESULTS
28 43 N-acylhydrazone chemical The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
60 69 magnesium chemical The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
111 134 UV-visible spectroscopy experimental_method The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
136 157 UV-visible titrations experimental_method The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
161 163 23 chemical The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
168 170 19 chemical The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
176 193 increasing amount experimental_method The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
197 208 Mg(CH3COO)2 chemical The interaction between the N-acylhydrazone ligands and the magnesium cation was investigated also by means of UV-visible spectroscopy (UV-visible titrations of 23 and 19 with increasing amount of Mg(CH3COO)2 are shown in Figure S1). RESULTS
4 12 spectrum evidence The spectrum of 19 includes a band at 313 nm assignable to n-π* transitions of the C = N and C = O groups. RESULTS
16 18 19 chemical The spectrum of 19 includes a band at 313 nm assignable to n-π* transitions of the C = N and C = O groups. RESULTS
36 47 Mg(CH3COO)2 chemical By adding increasing equivalents of Mg(CH3COO)2, the absorption around 400 nm increases, and a new band appears with a maximum at 397 nm. RESULTS
44 46 23 chemical When the same experiment was performed with 23, a different behavior was observed. RESULTS
28 33 Mg2+, chemical Increasing concentration of Mg2+, in fact, caused a diminution in the maximum absorption, an isosbestic point is visible at about 345 nm, but a new band at 400 nm does not appear. RESULTS
8 10 19 chemical Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
15 17 23 chemical Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
18 28 coordinate bond_interaction Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
33 37 Mg2+ chemical Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
62 64 19 chemical Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
164 166 23 chemical Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
294 296 UV experimental_method Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
297 305 spectrum evidence Ligands 19 and 23 coordinate the Mg2+ ions in different ways: 19 chelates the metal ion by using the deprotonated salicyl oxygen and the iminic nitrogen, while for 23, the gallic moiety is supposed to be involved (Fig. 4A,B versus C), leading to different, less extensive, modifications of the UV spectrum. RESULTS
18 20 PA protein Inhibition of the PA-Nter enzyme RESULTS
21 25 Nter structure_element Inhibition of the PA-Nter enzyme RESULTS
63 72 influenza taxonomy_domain All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
73 85 endonuclease protein_type All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
92 121 enzymatic plasmid-based assay experimental_method All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
139 141 PA protein All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
142 146 Nter structure_element All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
162 190 cell-based influenza methods experimental_method All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
197 239 virus yield and vRNP reconstitution assays experimental_method All the compounds were tested for their ability to inhibit the influenza endonuclease in an enzymatic plasmid-based assay with recombinant PA-Nter, as well as in cell-based influenza methods (i.e. virus yield and vRNP reconstitution assays). RESULTS
129 149 dose-response curves evidence The results are shown in Table 1 and summarized in Fig. 3 to visualize the structure-activity relationships; Figure S2 shows the dose-response curves for three representative compounds (i.e. 10, 13 and 23) in either the PA-enzyme or vRNP reconstitution assay. RESULTS
191 193 10 chemical The results are shown in Table 1 and summarized in Fig. 3 to visualize the structure-activity relationships; Figure S2 shows the dose-response curves for three representative compounds (i.e. 10, 13 and 23) in either the PA-enzyme or vRNP reconstitution assay. RESULTS
195 197 13 chemical The results are shown in Table 1 and summarized in Fig. 3 to visualize the structure-activity relationships; Figure S2 shows the dose-response curves for three representative compounds (i.e. 10, 13 and 23) in either the PA-enzyme or vRNP reconstitution assay. RESULTS
202 204 23 chemical The results are shown in Table 1 and summarized in Fig. 3 to visualize the structure-activity relationships; Figure S2 shows the dose-response curves for three representative compounds (i.e. 10, 13 and 23) in either the PA-enzyme or vRNP reconstitution assay. RESULTS
220 258 PA-enzyme or vRNP reconstitution assay experimental_method The results are shown in Table 1 and summarized in Fig. 3 to visualize the structure-activity relationships; Figure S2 shows the dose-response curves for three representative compounds (i.e. 10, 13 and 23) in either the PA-enzyme or vRNP reconstitution assay. RESULTS
23 27 IC50 evidence The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
40 81 N’-2,3-dihydroxybenzylidene semicarbazide chemical The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
83 84 1 chemical The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
170 171 3 chemical The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
245 246 5 chemical The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
251 252 7 chemical The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
254 258 IC50 evidence The moderate activity (IC50 = 24 μM) of N’-2,3-dihydroxybenzylidene semicarbazide (1) was completely lost when the NH2 moiety was replaced by a hydrophobic heptyl chain (3), but it is less affected when a phenyl or a 2-hydroxyphenyl is present (5 and 7, IC50 = 84 and 54 μM, respectively). RESULTS
39 63 2,3-dihydroxybenzylidene chemical When the hydroxyl in position 3 on R1 (2,3-dihydroxybenzylidene) was replaced by a methoxy group (2-hydroxy-3-methoxybenzylidene), the activity disappeared (compounds 2, 4, 6 and 8). RESULTS
98 128 2-hydroxy-3-methoxybenzylidene chemical When the hydroxyl in position 3 on R1 (2,3-dihydroxybenzylidene) was replaced by a methoxy group (2-hydroxy-3-methoxybenzylidene), the activity disappeared (compounds 2, 4, 6 and 8). RESULTS
167 168 2 chemical When the hydroxyl in position 3 on R1 (2,3-dihydroxybenzylidene) was replaced by a methoxy group (2-hydroxy-3-methoxybenzylidene), the activity disappeared (compounds 2, 4, 6 and 8). RESULTS
170 171 4 chemical When the hydroxyl in position 3 on R1 (2,3-dihydroxybenzylidene) was replaced by a methoxy group (2-hydroxy-3-methoxybenzylidene), the activity disappeared (compounds 2, 4, 6 and 8). RESULTS
173 174 6 chemical When the hydroxyl in position 3 on R1 (2,3-dihydroxybenzylidene) was replaced by a methoxy group (2-hydroxy-3-methoxybenzylidene), the activity disappeared (compounds 2, 4, 6 and 8). RESULTS
179 180 8 chemical When the hydroxyl in position 3 on R1 (2,3-dihydroxybenzylidene) was replaced by a methoxy group (2-hydroxy-3-methoxybenzylidene), the activity disappeared (compounds 2, 4, 6 and 8). RESULTS
28 32 IC50 evidence The activity is unaffected (IC50 values ranging from 45 to 75 μM) when going from two hydroxyls in R1 (7) to compounds with three hydroxyls (i.e. 9, 10 and 11). RESULTS
103 104 7 chemical The activity is unaffected (IC50 values ranging from 45 to 75 μM) when going from two hydroxyls in R1 (7) to compounds with three hydroxyls (i.e. 9, 10 and 11). RESULTS
146 147 9 chemical The activity is unaffected (IC50 values ranging from 45 to 75 μM) when going from two hydroxyls in R1 (7) to compounds with three hydroxyls (i.e. 9, 10 and 11). RESULTS
149 151 10 chemical The activity is unaffected (IC50 values ranging from 45 to 75 μM) when going from two hydroxyls in R1 (7) to compounds with three hydroxyls (i.e. 9, 10 and 11). RESULTS
156 158 11 chemical The activity is unaffected (IC50 values ranging from 45 to 75 μM) when going from two hydroxyls in R1 (7) to compounds with three hydroxyls (i.e. 9, 10 and 11). RESULTS
11 13 11 chemical Similarly, 11 (R1 = 3,4,5-trihydroxyphenyl, R2 = 2-hydroxyphenyl) had comparable activity as 27 (R1 = 3,4,5-trihydroxyphenyl, R2 = NH2). RESULTS
93 95 27 chemical Similarly, 11 (R1 = 3,4,5-trihydroxyphenyl, R2 = 2-hydroxyphenyl) had comparable activity as 27 (R1 = 3,4,5-trihydroxyphenyl, R2 = NH2). RESULTS
71 73 11 chemical Within the series carrying a 2-hydroxyphenyl R2 group, the activity of 11 is particularly intriguing. RESULTS
0 2 11 chemical 11 does not have the possibility to chelate in a tridentate ONO fashion (mode A in Fig. 4), but it can coordinate two cations by means of its three OH groups in R1 (mode C, Fig. 4). RESULTS
103 113 coordinate bond_interaction 11 does not have the possibility to chelate in a tridentate ONO fashion (mode A in Fig. 4), but it can coordinate two cations by means of its three OH groups in R1 (mode C, Fig. 4). RESULTS
53 70 crystal structure evidence Note that a similar chelating mode was observed in a crystal structure, solved by Cusack and coworkers, of PA-Nter endonuclease in complex with the inhibitor EGCG. RESULTS
107 109 PA protein Note that a similar chelating mode was observed in a crystal structure, solved by Cusack and coworkers, of PA-Nter endonuclease in complex with the inhibitor EGCG. RESULTS
110 114 Nter structure_element Note that a similar chelating mode was observed in a crystal structure, solved by Cusack and coworkers, of PA-Nter endonuclease in complex with the inhibitor EGCG. RESULTS
115 127 endonuclease protein_type Note that a similar chelating mode was observed in a crystal structure, solved by Cusack and coworkers, of PA-Nter endonuclease in complex with the inhibitor EGCG. RESULTS
128 143 in complex with protein_state Note that a similar chelating mode was observed in a crystal structure, solved by Cusack and coworkers, of PA-Nter endonuclease in complex with the inhibitor EGCG. RESULTS
158 162 EGCG chemical Note that a similar chelating mode was observed in a crystal structure, solved by Cusack and coworkers, of PA-Nter endonuclease in complex with the inhibitor EGCG. RESULTS
4 6 PA protein The PA-Nter inhibitory activity strongly depends on the number and position of hydroxyl substituents in R1 and R2: this is clearly highlighted by the data obtained with compounds 1323, in which R2 is a 3,4,5-trihydroxyphenyl (gallic) group, the most active scaffold in our series. RESULTS
7 11 Nter structure_element The PA-Nter inhibitory activity strongly depends on the number and position of hydroxyl substituents in R1 and R2: this is clearly highlighted by the data obtained with compounds 1323, in which R2 is a 3,4,5-trihydroxyphenyl (gallic) group, the most active scaffold in our series. RESULTS
179 184 1323 chemical The PA-Nter inhibitory activity strongly depends on the number and position of hydroxyl substituents in R1 and R2: this is clearly highlighted by the data obtained with compounds 1323, in which R2 is a 3,4,5-trihydroxyphenyl (gallic) group, the most active scaffold in our series. RESULTS
69 71 13 chemical The analogue carrying an unsubstituted aromatic ring as R1 (compound 13) had moderate activity (IC50 = 69 μM). RESULTS
96 100 IC50 evidence The analogue carrying an unsubstituted aromatic ring as R1 (compound 13) had moderate activity (IC50 = 69 μM). RESULTS
52 54 14 chemical When one OH was added at position 2 of the R1 ring (14), the activity was lost. RESULTS
83 85 15 chemical Adding a second OH substituent at position 5 resulted in strong activity (compound 15, IC50 = 9 μM); medium activity for a 3-OH (18; IC50 = 83 μM), and marginal activity when the second OH is at position 4 (17, IC50 ≥ 370 μM). RESULTS
87 91 IC50 evidence Adding a second OH substituent at position 5 resulted in strong activity (compound 15, IC50 = 9 μM); medium activity for a 3-OH (18; IC50 = 83 μM), and marginal activity when the second OH is at position 4 (17, IC50 ≥ 370 μM). RESULTS
129 131 18 chemical Adding a second OH substituent at position 5 resulted in strong activity (compound 15, IC50 = 9 μM); medium activity for a 3-OH (18; IC50 = 83 μM), and marginal activity when the second OH is at position 4 (17, IC50 ≥ 370 μM). RESULTS
133 137 IC50 evidence Adding a second OH substituent at position 5 resulted in strong activity (compound 15, IC50 = 9 μM); medium activity for a 3-OH (18; IC50 = 83 μM), and marginal activity when the second OH is at position 4 (17, IC50 ≥ 370 μM). RESULTS
207 209 17 chemical Adding a second OH substituent at position 5 resulted in strong activity (compound 15, IC50 = 9 μM); medium activity for a 3-OH (18; IC50 = 83 μM), and marginal activity when the second OH is at position 4 (17, IC50 ≥ 370 μM). RESULTS
211 215 IC50 evidence Adding a second OH substituent at position 5 resulted in strong activity (compound 15, IC50 = 9 μM); medium activity for a 3-OH (18; IC50 = 83 μM), and marginal activity when the second OH is at position 4 (17, IC50 ≥ 370 μM). RESULTS
35 37 19 chemical The addition of a 3-methoxy group (19) abolished all inhibitory activity. RESULTS
107 112 1419 chemical This cannot be related to variations in the chelating features displayed by the R1 moiety, since compounds 1419 all have, in theory, the capacity to chelate one metal ion through the ortho-OH and iminic nitrogen (mode A in Fig. 4). RESULTS
19 21 18 chemical Moreover, compound 18 can, in principle, chelate the two M2+ ions in the active site according to mode B (Fig. 4), yet it (IC50 = 83 μM) has nine-fold lower activity than 15, that does not possess this two-metal chelating feature. RESULTS
57 60 M2+ chemical Moreover, compound 18 can, in principle, chelate the two M2+ ions in the active site according to mode B (Fig. 4), yet it (IC50 = 83 μM) has nine-fold lower activity than 15, that does not possess this two-metal chelating feature. RESULTS
73 84 active site site Moreover, compound 18 can, in principle, chelate the two M2+ ions in the active site according to mode B (Fig. 4), yet it (IC50 = 83 μM) has nine-fold lower activity than 15, that does not possess this two-metal chelating feature. RESULTS
123 127 IC50 evidence Moreover, compound 18 can, in principle, chelate the two M2+ ions in the active site according to mode B (Fig. 4), yet it (IC50 = 83 μM) has nine-fold lower activity than 15, that does not possess this two-metal chelating feature. RESULTS
171 173 15 chemical Moreover, compound 18 can, in principle, chelate the two M2+ ions in the active site according to mode B (Fig. 4), yet it (IC50 = 83 μM) has nine-fold lower activity than 15, that does not possess this two-metal chelating feature. RESULTS
184 195 active site site Therefore, we hypothesized that the inhibitory activity of the series containing the gallic moiety is determined by: (i) the capacity of the moiety R2 to chelate two metal ions in the active site of the enzyme, according to mode C (Fig. 4); and (ii) the presence and position of one or more hydroxyl substituents in R1, which may possibly result in ligand-protein interactions (e.g. through hydrogen bonds). RESULTS
391 405 hydrogen bonds bond_interaction Therefore, we hypothesized that the inhibitory activity of the series containing the gallic moiety is determined by: (i) the capacity of the moiety R2 to chelate two metal ions in the active site of the enzyme, according to mode C (Fig. 4); and (ii) the presence and position of one or more hydroxyl substituents in R1, which may possibly result in ligand-protein interactions (e.g. through hydrogen bonds). RESULTS
33 63 molecular docking calculations experimental_method This assumption was supported by molecular docking calculations and X-ray analysis of inhibitor 23 in complex with PA-Nter (vide infra). RESULTS
68 82 X-ray analysis experimental_method This assumption was supported by molecular docking calculations and X-ray analysis of inhibitor 23 in complex with PA-Nter (vide infra). RESULTS
96 98 23 chemical This assumption was supported by molecular docking calculations and X-ray analysis of inhibitor 23 in complex with PA-Nter (vide infra). RESULTS
99 114 in complex with protein_state This assumption was supported by molecular docking calculations and X-ray analysis of inhibitor 23 in complex with PA-Nter (vide infra). RESULTS
115 117 PA protein This assumption was supported by molecular docking calculations and X-ray analysis of inhibitor 23 in complex with PA-Nter (vide infra). RESULTS
118 122 Nter structure_element This assumption was supported by molecular docking calculations and X-ray analysis of inhibitor 23 in complex with PA-Nter (vide infra). RESULTS
34 36 15 chemical Substitution of the 5-hydroxyl in 15 by a methoxy group (16) causes a dramatic drop in activity (IC50 = 9 and 454 μM for 15 and 16, respectively). RESULTS
57 59 16 chemical Substitution of the 5-hydroxyl in 15 by a methoxy group (16) causes a dramatic drop in activity (IC50 = 9 and 454 μM for 15 and 16, respectively). RESULTS
97 101 IC50 evidence Substitution of the 5-hydroxyl in 15 by a methoxy group (16) causes a dramatic drop in activity (IC50 = 9 and 454 μM for 15 and 16, respectively). RESULTS
121 123 15 chemical Substitution of the 5-hydroxyl in 15 by a methoxy group (16) causes a dramatic drop in activity (IC50 = 9 and 454 μM for 15 and 16, respectively). RESULTS
128 130 16 chemical Substitution of the 5-hydroxyl in 15 by a methoxy group (16) causes a dramatic drop in activity (IC50 = 9 and 454 μM for 15 and 16, respectively). RESULTS
81 83 20 chemical In particular, all the compounds with a trihydroxylated phenyl group as R1 (i.e. 20, 21, 22 and 23) were able to inhibit PA-Nter quite potently. RESULTS
85 87 21 chemical In particular, all the compounds with a trihydroxylated phenyl group as R1 (i.e. 20, 21, 22 and 23) were able to inhibit PA-Nter quite potently. RESULTS
89 91 22 chemical In particular, all the compounds with a trihydroxylated phenyl group as R1 (i.e. 20, 21, 22 and 23) were able to inhibit PA-Nter quite potently. RESULTS
96 98 23 chemical In particular, all the compounds with a trihydroxylated phenyl group as R1 (i.e. 20, 21, 22 and 23) were able to inhibit PA-Nter quite potently. RESULTS
121 123 PA protein In particular, all the compounds with a trihydroxylated phenyl group as R1 (i.e. 20, 21, 22 and 23) were able to inhibit PA-Nter quite potently. RESULTS
124 128 Nter structure_element In particular, all the compounds with a trihydroxylated phenyl group as R1 (i.e. 20, 21, 22 and 23) were able to inhibit PA-Nter quite potently. RESULTS
11 15 IC50 evidence The lowest IC50 values were obtained for 21 and 23 (IC50 = 13 and 7 μM, respectively), which both have one of their three hydroxyl groups at position 5. RESULTS
41 43 21 chemical The lowest IC50 values were obtained for 21 and 23 (IC50 = 13 and 7 μM, respectively), which both have one of their three hydroxyl groups at position 5. RESULTS
48 50 23 chemical The lowest IC50 values were obtained for 21 and 23 (IC50 = 13 and 7 μM, respectively), which both have one of their three hydroxyl groups at position 5. RESULTS
52 56 IC50 evidence The lowest IC50 values were obtained for 21 and 23 (IC50 = 13 and 7 μM, respectively), which both have one of their three hydroxyl groups at position 5. RESULTS
44 46 23 chemical The most active compound in this series was 23, which lacks the hydroxyl group at position 2 of R1, further confirming that this function is undesirable or even detrimental for inhibitory activity against PA-Nter, as already noticed above for 14. RESULTS
205 207 PA protein The most active compound in this series was 23, which lacks the hydroxyl group at position 2 of R1, further confirming that this function is undesirable or even detrimental for inhibitory activity against PA-Nter, as already noticed above for 14. RESULTS
208 212 Nter structure_element The most active compound in this series was 23, which lacks the hydroxyl group at position 2 of R1, further confirming that this function is undesirable or even detrimental for inhibitory activity against PA-Nter, as already noticed above for 14. RESULTS
243 245 14 chemical The most active compound in this series was 23, which lacks the hydroxyl group at position 2 of R1, further confirming that this function is undesirable or even detrimental for inhibitory activity against PA-Nter, as already noticed above for 14. RESULTS
64 73 chelation bond_interaction Consistent with a crucial role of the R2 gallic moiety in metal chelation, the strong activity of 15 was completely lost in its 3,4,5-trimethoxy analogue 12. RESULTS
98 100 15 chemical Consistent with a crucial role of the R2 gallic moiety in metal chelation, the strong activity of 15 was completely lost in its 3,4,5-trimethoxy analogue 12. RESULTS
154 156 12 chemical Consistent with a crucial role of the R2 gallic moiety in metal chelation, the strong activity of 15 was completely lost in its 3,4,5-trimethoxy analogue 12. RESULTS
83 87 IC50 evidence On the other hand, the R2 gallic containing compounds displayed moderate activity (IC50 values around 40 μM) when R1 was absent (i.e. the 3,4,5-trihydroxybenzohydrazide 28, Fig. 2), or composed of an extended ring system (26) or a pyrrole ring (25). RESULTS
138 168 3,4,5-trihydroxybenzohydrazide chemical On the other hand, the R2 gallic containing compounds displayed moderate activity (IC50 values around 40 μM) when R1 was absent (i.e. the 3,4,5-trihydroxybenzohydrazide 28, Fig. 2), or composed of an extended ring system (26) or a pyrrole ring (25). RESULTS
169 171 28 chemical On the other hand, the R2 gallic containing compounds displayed moderate activity (IC50 values around 40 μM) when R1 was absent (i.e. the 3,4,5-trihydroxybenzohydrazide 28, Fig. 2), or composed of an extended ring system (26) or a pyrrole ring (25). RESULTS
222 224 26 chemical On the other hand, the R2 gallic containing compounds displayed moderate activity (IC50 values around 40 μM) when R1 was absent (i.e. the 3,4,5-trihydroxybenzohydrazide 28, Fig. 2), or composed of an extended ring system (26) or a pyrrole ring (25). RESULTS
245 247 25 chemical On the other hand, the R2 gallic containing compounds displayed moderate activity (IC50 values around 40 μM) when R1 was absent (i.e. the 3,4,5-trihydroxybenzohydrazide 28, Fig. 2), or composed of an extended ring system (26) or a pyrrole ring (25). RESULTS
57 59 24 chemical Still lower activity was seen with the pyridine analogue 24. RESULTS
102 104 PA protein Evidently, the 3,4,5-trihydroxybenzyl moiety at R2 is fundamental but not sufficient to ensure potent PA-Nter endonuclease inhibition, since the interactions of R1 with the amino acid side chains of the protein appear crucial in modulating activity. RESULTS
105 109 Nter structure_element Evidently, the 3,4,5-trihydroxybenzyl moiety at R2 is fundamental but not sufficient to ensure potent PA-Nter endonuclease inhibition, since the interactions of R1 with the amino acid side chains of the protein appear crucial in modulating activity. RESULTS
110 122 endonuclease protein_type Evidently, the 3,4,5-trihydroxybenzyl moiety at R2 is fundamental but not sufficient to ensure potent PA-Nter endonuclease inhibition, since the interactions of R1 with the amino acid side chains of the protein appear crucial in modulating activity. RESULTS
14 18 vRNP complex_assembly Inhibition of vRNP activity or virus replication in cells RESULTS
31 36 virus taxonomy_domain Inhibition of vRNP activity or virus replication in cells RESULTS
22 31 influenza taxonomy_domain To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
32 37 virus taxonomy_domain To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
60 64 1–28 chemical To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
98 133 influenza vRNP reconstitution assay experimental_method To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
137 142 human species To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
225 229 EC50 evidence To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
245 262 virus yield assay experimental_method To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
266 275 influenza taxonomy_domain To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
276 281 virus taxonomy_domain To determine the anti-influenza virus activity of compounds 1–28 in cell culture, we performed an influenza vRNP reconstitution assay in human embryonic kidney 293 T (HEK293T) cells, then subjected the active compounds (i.e. EC50 < 100 μM) to a virus yield assay in influenza virus-infected Madin-Darby canine kidney (MDCK) cells (Table 1 and Fig. 3). RESULTS
9 24 N-acylhydrazone chemical For some N-acylhydrazone compounds, we observed quite potent and selective activity in the vRNP reconstitution assay. RESULTS
91 116 vRNP reconstitution assay experimental_method For some N-acylhydrazone compounds, we observed quite potent and selective activity in the vRNP reconstitution assay. RESULTS
45 50 viral taxonomy_domain This indicates that they are able to inhibit viral RNA synthesis and suggests that they could be classified as original PA inhibitors. RESULTS
51 54 RNA chemical This indicates that they are able to inhibit viral RNA synthesis and suggests that they could be classified as original PA inhibitors. RESULTS
120 122 PA protein This indicates that they are able to inhibit viral RNA synthesis and suggests that they could be classified as original PA inhibitors. RESULTS
11 15 EC50 evidence Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
17 21 vRNP complex_assembly Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
26 30 EC90 evidence Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
32 37 virus taxonomy_domain Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
99 101 15 chemical Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
106 111 20–23 chemical Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
185 187 15 chemical Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
199 201 20 chemical Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
202 204 23 chemical Values for EC50 (vRNP) or EC90 (virus yield) in the range of 0.4–18 μM were obtained for compounds 15 and 20–23, which all carry a 3,4,5-trihydroxyphenyl as R2, and possess either two (15) or three (20–23) hydroxyl substituents in the R1 moiety. RESULTS
10 34 enzymatic PA-Nter assays experimental_method As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
88 90 21 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
92 94 22 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
99 101 23 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
186 187 9 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
189 191 10 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
196 198 11 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
201 203 10 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
208 210 22 chemical As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
239 243 EC50 evidence As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
251 276 vRNP reconstitution assay experimental_method As in the enzymatic PA-Nter assays, the compounds having R2 as a gallic moiety (Fig. 3: 21, 22 and 23) showed slightly higher activity than the compounds carrying a 2-hydroxyl R2 group (9, 10 and 11); 10 and 22 have substantially the same EC50 in the vRNP reconstitution assay in HEK293T cells. RESULTS
4 13 hydrazide chemical The hydrazide 28 displayed weak (virus yield) to moderate (vRNP reconstitution) activity, albeit less than the most active molecules in the 3,4,5-trihydroxyphenyl series (i.e. 18 and 2123). RESULTS
14 16 28 chemical The hydrazide 28 displayed weak (virus yield) to moderate (vRNP reconstitution) activity, albeit less than the most active molecules in the 3,4,5-trihydroxyphenyl series (i.e. 18 and 2123). RESULTS
33 38 virus taxonomy_domain The hydrazide 28 displayed weak (virus yield) to moderate (vRNP reconstitution) activity, albeit less than the most active molecules in the 3,4,5-trihydroxyphenyl series (i.e. 18 and 2123). RESULTS
59 78 vRNP reconstitution experimental_method The hydrazide 28 displayed weak (virus yield) to moderate (vRNP reconstitution) activity, albeit less than the most active molecules in the 3,4,5-trihydroxyphenyl series (i.e. 18 and 2123). RESULTS
176 178 18 chemical The hydrazide 28 displayed weak (virus yield) to moderate (vRNP reconstitution) activity, albeit less than the most active molecules in the 3,4,5-trihydroxyphenyl series (i.e. 18 and 2123). RESULTS
183 188 2123 chemical The hydrazide 28 displayed weak (virus yield) to moderate (vRNP reconstitution) activity, albeit less than the most active molecules in the 3,4,5-trihydroxyphenyl series (i.e. 18 and 2123). RESULTS
121 123 28 chemical Even if there are no data indicating that the compounds reported in the paper are subject to hydrolysis, the activity of 28 could raise the concern that for some N-acylhydrazones the antiviral activity in cell culture may be related to their intracellular hydrolysis. RESULTS
162 178 N-acylhydrazones chemical Even if there are no data indicating that the compounds reported in the paper are subject to hydrolysis, the activity of 28 could raise the concern that for some N-acylhydrazones the antiviral activity in cell culture may be related to their intracellular hydrolysis. RESULTS
86 90 EC50 evidence However, this is unlikely, since the antiviral potency showed large differences (i.e. EC50 values between 0.42 and 29 μM) for compounds with the same R2 but different R1 groups, meaning that R1 does play a role in modulating the antiviral effect. RESULTS
32 56 2,3-dihydroxybenzylidene chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
63 64 3 chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
66 67 5 chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
72 73 7 chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
78 108 2-hydroxy-3-methoxybenzylidene chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
122 123 4 chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
125 126 6 chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
131 132 8 chemical Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
177 187 vRNP assay experimental_method Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
194 198 CC50 evidence Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
224 241 selectivity index evidence Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
252 256 CC50 evidence Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
260 264 EC50 evidence Most compounds carrying as R1 a 2,3-dihydroxybenzylidene (i.e. 3, 5 and 7) or 2-hydroxy-3-methoxybenzylidene moiety (i.e. 4, 6 and 8) showed relatively high cytotoxicity in the vRNP assay, with CC50 values below 50 μM and a selectivity index (ratio of CC50 to EC50) below 8. RESULTS
27 29 18 chemical Two notable exceptions are 18 and 19 (containing a 2,3-dihydroxybenzylidene or 2-hydroxy-3-methoxybenzylidene R1, respectively) which were not cytotoxic at 200 μM and displayed favorable antiviral selectivity. RESULTS
34 36 19 chemical Two notable exceptions are 18 and 19 (containing a 2,3-dihydroxybenzylidene or 2-hydroxy-3-methoxybenzylidene R1, respectively) which were not cytotoxic at 200 μM and displayed favorable antiviral selectivity. RESULTS
51 75 2,3-dihydroxybenzylidene chemical Two notable exceptions are 18 and 19 (containing a 2,3-dihydroxybenzylidene or 2-hydroxy-3-methoxybenzylidene R1, respectively) which were not cytotoxic at 200 μM and displayed favorable antiviral selectivity. RESULTS
79 109 2-hydroxy-3-methoxybenzylidene chemical Two notable exceptions are 18 and 19 (containing a 2,3-dihydroxybenzylidene or 2-hydroxy-3-methoxybenzylidene R1, respectively) which were not cytotoxic at 200 μM and displayed favorable antiviral selectivity. RESULTS
5 20 N-acylhydrazone chemical Some N-acylhydrazone compounds were devoid of activity in the enzymatic assay, yet showed good to moderate efficacy in cell culture (e.g. 14 and 19, having EC50 values of 2.2 and 7.1 μM, respectively). RESULTS
62 77 enzymatic assay experimental_method Some N-acylhydrazone compounds were devoid of activity in the enzymatic assay, yet showed good to moderate efficacy in cell culture (e.g. 14 and 19, having EC50 values of 2.2 and 7.1 μM, respectively). RESULTS
138 140 14 chemical Some N-acylhydrazone compounds were devoid of activity in the enzymatic assay, yet showed good to moderate efficacy in cell culture (e.g. 14 and 19, having EC50 values of 2.2 and 7.1 μM, respectively). RESULTS
145 147 19 chemical Some N-acylhydrazone compounds were devoid of activity in the enzymatic assay, yet showed good to moderate efficacy in cell culture (e.g. 14 and 19, having EC50 values of 2.2 and 7.1 μM, respectively). RESULTS
156 160 EC50 evidence Some N-acylhydrazone compounds were devoid of activity in the enzymatic assay, yet showed good to moderate efficacy in cell culture (e.g. 14 and 19, having EC50 values of 2.2 and 7.1 μM, respectively). RESULTS
39 40 9 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
42 44 11 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
46 48 13 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
50 55 1521 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
57 59 23 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
61 63 24 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
68 70 26 chemical For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
112 129 cell-based assays experimental_method For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
141 145 EC50 evidence For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
169 179 vRNP assay experimental_method For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
219 223 EC90 evidence For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
238 255 virus yield assay experimental_method For most of the active compounds (i.e. 9, 11, 13, 1521, 23, 24 and 26) a fair correlation was seen for the two cell-based assays, since the EC50 values obtained in the vRNP assay were maximum 5-fold different from the EC90 values in the virus yield assay. RESULTS
58 59 7 chemical On the other hand, this difference was 8-fold or more for 7, 10, 14, 22, 25 and 28. RESULTS
61 63 10 chemical On the other hand, this difference was 8-fold or more for 7, 10, 14, 22, 25 and 28. RESULTS
65 67 14 chemical On the other hand, this difference was 8-fold or more for 7, 10, 14, 22, 25 and 28. RESULTS
69 71 22 chemical On the other hand, this difference was 8-fold or more for 7, 10, 14, 22, 25 and 28. RESULTS
73 75 25 chemical On the other hand, this difference was 8-fold or more for 7, 10, 14, 22, 25 and 28. RESULTS
80 82 28 chemical On the other hand, this difference was 8-fold or more for 7, 10, 14, 22, 25 and 28. RESULTS
5 20 N-acylhydrazone chemical Some N-acylhydrazone compounds showed good to moderate efficacy in the vRNP assay (e.g. 14 and 19, having EC50 values of 2.3 and 5.7 μM, respectively), yet were devoid of activity in the enzymatic assay. RESULTS
71 81 vRNP assay experimental_method Some N-acylhydrazone compounds showed good to moderate efficacy in the vRNP assay (e.g. 14 and 19, having EC50 values of 2.3 and 5.7 μM, respectively), yet were devoid of activity in the enzymatic assay. RESULTS
88 90 14 chemical Some N-acylhydrazone compounds showed good to moderate efficacy in the vRNP assay (e.g. 14 and 19, having EC50 values of 2.3 and 5.7 μM, respectively), yet were devoid of activity in the enzymatic assay. RESULTS
95 97 19 chemical Some N-acylhydrazone compounds showed good to moderate efficacy in the vRNP assay (e.g. 14 and 19, having EC50 values of 2.3 and 5.7 μM, respectively), yet were devoid of activity in the enzymatic assay. RESULTS
106 110 EC50 evidence Some N-acylhydrazone compounds showed good to moderate efficacy in the vRNP assay (e.g. 14 and 19, having EC50 values of 2.3 and 5.7 μM, respectively), yet were devoid of activity in the enzymatic assay. RESULTS
187 202 enzymatic assay experimental_method Some N-acylhydrazone compounds showed good to moderate efficacy in the vRNP assay (e.g. 14 and 19, having EC50 values of 2.3 and 5.7 μM, respectively), yet were devoid of activity in the enzymatic assay. RESULTS
52 57 viral taxonomy_domain This observation suggests that they may inhibit the viral polymerase in an endonuclease-independent manner. RESULTS
58 68 polymerase protein_type This observation suggests that they may inhibit the viral polymerase in an endonuclease-independent manner. RESULTS
75 87 endonuclease protein_type This observation suggests that they may inhibit the viral polymerase in an endonuclease-independent manner. RESULTS
61 77 N-acylhydrazones chemical To achieve a clear insight into the antiviral profile of the N-acylhydrazones, specific mechanistic experiments are currently ongoing in our laboratory, in which we are analyzing in full depth their effects on virus entry, polymerase-dependent RNA synthesis or the late stage (maturation and release) of the virus replication cycle. RESULTS
210 215 virus taxonomy_domain To achieve a clear insight into the antiviral profile of the N-acylhydrazones, specific mechanistic experiments are currently ongoing in our laboratory, in which we are analyzing in full depth their effects on virus entry, polymerase-dependent RNA synthesis or the late stage (maturation and release) of the virus replication cycle. RESULTS
223 233 polymerase protein_type To achieve a clear insight into the antiviral profile of the N-acylhydrazones, specific mechanistic experiments are currently ongoing in our laboratory, in which we are analyzing in full depth their effects on virus entry, polymerase-dependent RNA synthesis or the late stage (maturation and release) of the virus replication cycle. RESULTS
244 247 RNA chemical To achieve a clear insight into the antiviral profile of the N-acylhydrazones, specific mechanistic experiments are currently ongoing in our laboratory, in which we are analyzing in full depth their effects on virus entry, polymerase-dependent RNA synthesis or the late stage (maturation and release) of the virus replication cycle. RESULTS
308 313 virus taxonomy_domain To achieve a clear insight into the antiviral profile of the N-acylhydrazones, specific mechanistic experiments are currently ongoing in our laboratory, in which we are analyzing in full depth their effects on virus entry, polymerase-dependent RNA synthesis or the late stage (maturation and release) of the virus replication cycle. RESULTS
0 15 Docking studies experimental_method Docking studies RESULTS
76 95 docking simulations experimental_method In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
99 111 GOLD program experimental_method In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
187 189 PA protein In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
190 194 Nter structure_element In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
195 207 endonuclease protein_type In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
208 223 in complex with protein_state In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
224 228 EGCG chemical In order to explore the possible binding mode of the synthesized compounds, docking simulations by GOLD program were performed by using the structural coordinates (PDB code 4AWM) for the PA-Nter endonuclease in complex with EGCG. RESULTS
128 140 superimposed experimental_method Considering that the position of the side-chains of some residues changes depending on which pocket the ligand is occupying, we superimposed some X-ray structures of complexes between PA-Nter endonuclease and known active ligands. RESULTS
146 162 X-ray structures evidence Considering that the position of the side-chains of some residues changes depending on which pocket the ligand is occupying, we superimposed some X-ray structures of complexes between PA-Nter endonuclease and known active ligands. RESULTS
184 186 PA protein Considering that the position of the side-chains of some residues changes depending on which pocket the ligand is occupying, we superimposed some X-ray structures of complexes between PA-Nter endonuclease and known active ligands. RESULTS
187 191 Nter structure_element Considering that the position of the side-chains of some residues changes depending on which pocket the ligand is occupying, we superimposed some X-ray structures of complexes between PA-Nter endonuclease and known active ligands. RESULTS
192 204 endonuclease protein_type Considering that the position of the side-chains of some residues changes depending on which pocket the ligand is occupying, we superimposed some X-ray structures of complexes between PA-Nter endonuclease and known active ligands. RESULTS
50 55 Tyr24 residue_name_number It was observed that the side-chain of amino acid Tyr24 shows greater movement than the other residues and for this reason we considered it as a flexible residue during the docking procedure. RESULTS
145 153 flexible protein_state It was observed that the side-chain of amino acid Tyr24 shows greater movement than the other residues and for this reason we considered it as a flexible residue during the docking procedure. RESULTS
173 190 docking procedure experimental_method It was observed that the side-chain of amino acid Tyr24 shows greater movement than the other residues and for this reason we considered it as a flexible residue during the docking procedure. RESULTS
7 32 test docking calculations experimental_method First, test docking calculations, using EGCG, L-742,001 and 2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one (Fig. 1), were carried out to compare experimental and predicted binding modes and validate docking procedure. RESULTS
40 44 EGCG chemical First, test docking calculations, using EGCG, L-742,001 and 2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one (Fig. 1), were carried out to compare experimental and predicted binding modes and validate docking procedure. RESULTS
46 55 L-742,001 chemical First, test docking calculations, using EGCG, L-742,001 and 2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one (Fig. 1), were carried out to compare experimental and predicted binding modes and validate docking procedure. RESULTS
60 119 2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one chemical First, test docking calculations, using EGCG, L-742,001 and 2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one (Fig. 1), were carried out to compare experimental and predicted binding modes and validate docking procedure. RESULTS
212 229 docking procedure experimental_method First, test docking calculations, using EGCG, L-742,001 and 2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one (Fig. 1), were carried out to compare experimental and predicted binding modes and validate docking procedure. RESULTS
74 78 rmsd evidence Their best docking poses agreed well with the experimental binding modes (rmsd values of 0.8, 1.2 and 0.7, respectively). RESULTS
6 13 docking experimental_method Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
25 41 N-acylhydrazones chemical Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
141 159 active site cavity site Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
167 169 PA protein Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
170 182 endonuclease protein_type Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
229 253 crystallographic studies experimental_method Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
318 321 M2+ chemical Next, docking of several N-acylhydrazones was performed and this generated a number of possible binding conformations, highlighting that the active site cavity of the PA endonuclease is quite spacious, as already demonstrated by crystallographic studies, and confirming the ability of this scaffold to chelate the two M2+ ions in different ways (Mode A-C in Fig. 4). RESULTS
59 78 GOLD cluster docked experimental_method Figure 5 displays the first (panel A) and second (panel B) GOLD cluster docked solutions for compound 23. RESULTS
102 104 23 chemical Figure 5 displays the first (panel A) and second (panel B) GOLD cluster docked solutions for compound 23. RESULTS
18 28 structures evidence These two complex structures represent the largest clusters with similar fitness values (59.20 and 58.65, respectively). RESULTS
15 17 23 chemical In both cases, 23 appears able to coordinate the two M2+ ions in the active site through the three contiguous OH groups (Fig. 5). RESULTS
34 44 coordinate bond_interaction In both cases, 23 appears able to coordinate the two M2+ ions in the active site through the three contiguous OH groups (Fig. 5). RESULTS
53 56 M2+ chemical In both cases, 23 appears able to coordinate the two M2+ ions in the active site through the three contiguous OH groups (Fig. 5). RESULTS
69 80 active site site In both cases, 23 appears able to coordinate the two M2+ ions in the active site through the three contiguous OH groups (Fig. 5). RESULTS
13 15 23 chemical In addition, 23 was predicted to form two hydrogen bonding interactions, i.e. with the catalytic Lys134 on the one side and Glu26 on the other side. RESULTS
42 71 hydrogen bonding interactions bond_interaction In addition, 23 was predicted to form two hydrogen bonding interactions, i.e. with the catalytic Lys134 on the one side and Glu26 on the other side. RESULTS
87 96 catalytic protein_state In addition, 23 was predicted to form two hydrogen bonding interactions, i.e. with the catalytic Lys134 on the one side and Glu26 on the other side. RESULTS
97 103 Lys134 residue_name_number In addition, 23 was predicted to form two hydrogen bonding interactions, i.e. with the catalytic Lys134 on the one side and Glu26 on the other side. RESULTS
124 129 Glu26 residue_name_number In addition, 23 was predicted to form two hydrogen bonding interactions, i.e. with the catalytic Lys134 on the one side and Glu26 on the other side. RESULTS
51 53 23 chemical Furthermore, in these two different binding modes, 23 forms π–π interactions with the aromatic ring of Tyr24, in a fashion similar to that described for other endonuclease inhibitors, i.e. EGCG and L-742,001. RESULTS
60 76 π–π interactions bond_interaction Furthermore, in these two different binding modes, 23 forms π–π interactions with the aromatic ring of Tyr24, in a fashion similar to that described for other endonuclease inhibitors, i.e. EGCG and L-742,001. RESULTS
103 108 Tyr24 residue_name_number Furthermore, in these two different binding modes, 23 forms π–π interactions with the aromatic ring of Tyr24, in a fashion similar to that described for other endonuclease inhibitors, i.e. EGCG and L-742,001. RESULTS
159 171 endonuclease protein_type Furthermore, in these two different binding modes, 23 forms π–π interactions with the aromatic ring of Tyr24, in a fashion similar to that described for other endonuclease inhibitors, i.e. EGCG and L-742,001. RESULTS
189 193 EGCG chemical Furthermore, in these two different binding modes, 23 forms π–π interactions with the aromatic ring of Tyr24, in a fashion similar to that described for other endonuclease inhibitors, i.e. EGCG and L-742,001. RESULTS
198 207 L-742,001 chemical Furthermore, in these two different binding modes, 23 forms π–π interactions with the aromatic ring of Tyr24, in a fashion similar to that described for other endonuclease inhibitors, i.e. EGCG and L-742,001. RESULTS
42 44 15 chemical The best docked conformation for compound 15 (Fig. 6, fitness value 68.56), which has an activity slightly lower than 23, reveals a different role for the gallic moiety. RESULTS
54 67 fitness value evidence The best docked conformation for compound 15 (Fig. 6, fitness value 68.56), which has an activity slightly lower than 23, reveals a different role for the gallic moiety. RESULTS
29 58 hydrogen bonding interactions bond_interaction The ligand seems to form two hydrogen bonding interactions with Tyr130 as well as a cation–π interaction with Lys134. RESULTS
64 70 Tyr130 residue_name_number The ligand seems to form two hydrogen bonding interactions with Tyr130 as well as a cation–π interaction with Lys134. RESULTS
84 104 cation–π interaction bond_interaction The ligand seems to form two hydrogen bonding interactions with Tyr130 as well as a cation–π interaction with Lys134. RESULTS
110 116 Lys134 residue_name_number The ligand seems to form two hydrogen bonding interactions with Tyr130 as well as a cation–π interaction with Lys134. RESULTS
0 6 Tyr130 residue_name_number Tyr130 lies in a pocket that also contains Arg124, a residue that was proposed to have a crucial role in binding of the RNA substrate. RESULTS
17 23 pocket site Tyr130 lies in a pocket that also contains Arg124, a residue that was proposed to have a crucial role in binding of the RNA substrate. RESULTS
43 49 Arg124 residue_name_number Tyr130 lies in a pocket that also contains Arg124, a residue that was proposed to have a crucial role in binding of the RNA substrate. RESULTS
120 123 RNA chemical Tyr130 lies in a pocket that also contains Arg124, a residue that was proposed to have a crucial role in binding of the RNA substrate. RESULTS
9 11 15 chemical Compound 15 appears further stabilized by hydrogen bonding interactions between two hydroxyl groups and Arg82 and Asp108. RESULTS
42 71 hydrogen bonding interactions bond_interaction Compound 15 appears further stabilized by hydrogen bonding interactions between two hydroxyl groups and Arg82 and Asp108. RESULTS
104 109 Arg82 residue_name_number Compound 15 appears further stabilized by hydrogen bonding interactions between two hydroxyl groups and Arg82 and Asp108. RESULTS
114 120 Asp108 residue_name_number Compound 15 appears further stabilized by hydrogen bonding interactions between two hydroxyl groups and Arg82 and Asp108. RESULTS
14 23 chelation bond_interaction In this case, chelation of the two M2+ ions is carried out by involving the imine group (mode A in Fig. 4). RESULTS
35 38 M2+ chemical In this case, chelation of the two M2+ ions is carried out by involving the imine group (mode A in Fig. 4). RESULTS
44 46 23 chemical It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
51 53 15 chemical It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
163 179 highly conserved protein_state It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
192 197 Tyr24 residue_name_number It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
199 204 Glu26 residue_name_number It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
206 212 Arg124 residue_name_number It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
214 220 Tyr130 residue_name_number It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
225 231 Lys134 residue_name_number It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
266 278 endonuclease protein_type It is important to highlight that compounds 23 and 15, although in different ways, both are able to chelate the metal cofactors and to establish interactions with highly conserved aminoacids (Tyr24, Glu26, Arg124, Tyr130 and Lys134) that are very important for both endonuclease activity and transcription in vitro. RESULTS
91 93 15 chemical The crucial role of such interactions is underlined by the differences in activity between 15 (IC50 = 9.0 μM) and 19 (>500 μM): their coordinating features are similar, since both coordinate to the divalent metal ion through the phenolic oxygen, the iminic nitrogen and the carbonylic oxygen (mode A in Fig. 4), but the biological activity could be related to their different ability to engage interactions with the protein environment. RESULTS
95 99 IC50 evidence The crucial role of such interactions is underlined by the differences in activity between 15 (IC50 = 9.0 μM) and 19 (>500 μM): their coordinating features are similar, since both coordinate to the divalent metal ion through the phenolic oxygen, the iminic nitrogen and the carbonylic oxygen (mode A in Fig. 4), but the biological activity could be related to their different ability to engage interactions with the protein environment. RESULTS
114 116 19 chemical The crucial role of such interactions is underlined by the differences in activity between 15 (IC50 = 9.0 μM) and 19 (>500 μM): their coordinating features are similar, since both coordinate to the divalent metal ion through the phenolic oxygen, the iminic nitrogen and the carbonylic oxygen (mode A in Fig. 4), but the biological activity could be related to their different ability to engage interactions with the protein environment. RESULTS
180 190 coordinate bond_interaction The crucial role of such interactions is underlined by the differences in activity between 15 (IC50 = 9.0 μM) and 19 (>500 μM): their coordinating features are similar, since both coordinate to the divalent metal ion through the phenolic oxygen, the iminic nitrogen and the carbonylic oxygen (mode A in Fig. 4), but the biological activity could be related to their different ability to engage interactions with the protein environment. RESULTS
0 24 Crystallographic Studies experimental_method Crystallographic Studies RESULTS
22 36 co-crystallize experimental_method Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
37 39 PA protein Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
40 44 Nter structure_element Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
50 52 15 chemical Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
54 56 20 chemical Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
58 60 21 chemical Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
65 67 23 chemical Attempts were made to co-crystallize PA-Nter with 15, 20, 21 and 23 in one to four molar excess. RESULTS
6 14 crystals evidence While crystals appeared and diffracted well, upon data processing, no or very little electron density for the inhibitors was observed. RESULTS
85 101 electron density evidence While crystals appeared and diffracted well, upon data processing, no or very little electron density for the inhibitors was observed. RESULTS
17 20 apo protein_state Attempts to soak apo crystals in crystallization solution containing 5 mM inhibitor overnight also did not result in substantial electron density for the inhibitor. RESULTS
21 29 crystals evidence Attempts to soak apo crystals in crystallization solution containing 5 mM inhibitor overnight also did not result in substantial electron density for the inhibitor. RESULTS
129 145 electron density evidence Attempts to soak apo crystals in crystallization solution containing 5 mM inhibitor overnight also did not result in substantial electron density for the inhibitor. RESULTS
101 104 apo protein_state As a last resort, dry powder of the inhibitor was sprinkled over the crystallization drop containing apo crystals and left over night. RESULTS
105 113 crystals evidence As a last resort, dry powder of the inhibitor was sprinkled over the crystallization drop containing apo crystals and left over night. RESULTS
44 46 23 chemical This experiment was successful for compound 23, the crystals diffracted to 2.15 Å and diffraction data were collected (PDB ID 5EGA). RESULTS
52 60 crystals evidence This experiment was successful for compound 23, the crystals diffracted to 2.15 Å and diffraction data were collected (PDB ID 5EGA). RESULTS
12 21 structure evidence The refined structure shows unambiguous electron density for the inhibitor (Table S1 and Fig. 7). RESULTS
40 56 electron density evidence The refined structure shows unambiguous electron density for the inhibitor (Table S1 and Fig. 7). RESULTS
4 21 complex structure evidence The complex structure confirms one of the two binding modes predicted by the docking simulations (Fig. 5, panel B). RESULTS
77 96 docking simulations experimental_method The complex structure confirms one of the two binding modes predicted by the docking simulations (Fig. 5, panel B). RESULTS
32 41 manganese chemical The galloyl moiety chelates the manganese ions, while the trihydroxyphenyl group stacks against the Tyr24 side chain. RESULTS
100 105 Tyr24 residue_name_number The galloyl moiety chelates the manganese ions, while the trihydroxyphenyl group stacks against the Tyr24 side chain. RESULTS
84 98 hydrogen bonds bond_interaction It is interesting to note that two of these hydroxyl groups are in position to form hydrogen bonds with the side chain of Glu26 and Lys34 (Fig. 7). RESULTS
122 127 Glu26 residue_name_number It is interesting to note that two of these hydroxyl groups are in position to form hydrogen bonds with the side chain of Glu26 and Lys34 (Fig. 7). RESULTS
132 137 Lys34 residue_name_number It is interesting to note that two of these hydroxyl groups are in position to form hydrogen bonds with the side chain of Glu26 and Lys34 (Fig. 7). RESULTS
147 152 Glu26 residue_name_number These interactions suggest that other functional groups, e.g. halogens, could be used in place of the hydroxyl groups for better interactions with Glu26 and Lys34 side chains, and the inhibitory potency of these compounds could be further improved. RESULTS
157 162 Lys34 residue_name_number These interactions suggest that other functional groups, e.g. halogens, could be used in place of the hydroxyl groups for better interactions with Glu26 and Lys34 side chains, and the inhibitory potency of these compounds could be further improved. RESULTS
51 60 influenza taxonomy_domain The development of new agents for the treatment of influenza infection that exert their action by inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase is a strategy that recently is gaining a lot of interest. CONCL
116 128 endonuclease protein_type The development of new agents for the treatment of influenza infection that exert their action by inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase is a strategy that recently is gaining a lot of interest. CONCL
141 150 influenza taxonomy_domain The development of new agents for the treatment of influenza infection that exert their action by inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase is a strategy that recently is gaining a lot of interest. CONCL
151 179 RNA-dependent RNA polymerase protein_type The development of new agents for the treatment of influenza infection that exert their action by inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase is a strategy that recently is gaining a lot of interest. CONCL
35 50 N-acylhydrazone chemical The results here presented add the N-acylhydrazone scaffold to the library of the chelating molecules with potent antiviral activity (EC90 < 5 μM, virus yield assay in influenza virus-infected MDCK cells). CONCL
134 138 EC90 evidence The results here presented add the N-acylhydrazone scaffold to the library of the chelating molecules with potent antiviral activity (EC90 < 5 μM, virus yield assay in influenza virus-infected MDCK cells). CONCL
147 164 virus yield assay experimental_method The results here presented add the N-acylhydrazone scaffold to the library of the chelating molecules with potent antiviral activity (EC90 < 5 μM, virus yield assay in influenza virus-infected MDCK cells). CONCL
168 177 influenza taxonomy_domain The results here presented add the N-acylhydrazone scaffold to the library of the chelating molecules with potent antiviral activity (EC90 < 5 μM, virus yield assay in influenza virus-infected MDCK cells). CONCL
178 183 virus taxonomy_domain The results here presented add the N-acylhydrazone scaffold to the library of the chelating molecules with potent antiviral activity (EC90 < 5 μM, virus yield assay in influenza virus-infected MDCK cells). CONCL
4 13 structure evidence The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
21 36 N-acylhydrazone chemical The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
37 39 23 chemical The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
40 55 co-crystallized experimental_method The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
61 63 PA protein The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
64 68 Nter structure_element The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
152 163 coordinates bond_interaction The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
168 173 metal chemical The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
186 197 active site site The structure of the N-acylhydrazone 23 co-crystallized with PA-Nter is important not only because confirms that the polyhydroxypheyl group efficiently coordinates two metal ions in the active site of the enzyme, but also because highlights the importance of the (flexible) inhibitor backbone in order to engage effective interactions with crucial aminoacids of the protein. CONCL
18 30 endonuclease protein_type Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
43 52 influenza taxonomy_domain Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
53 81 RNA-dependent RNA polymerase protein_type Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
121 139 carbonic anhydrase protein_type Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
141 160 histone deacetylase protein_type Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
166 171 HIV-1 species Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
172 181 integrase protein_type Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
186 191 metal chemical Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase could represent another example, after carbonic anhydrase, histone deacetylase, and HIV-1 integrase, of metal binding as a successful strategy in drug design. CONCL
15 20 water chemical The ligand and water molecules were discarded and the hydrogens were added to the protein by Discovery Studio 2.5. METHODS
233 244 presence of protein_state One microgram of recombinant PA-Nter (residues 1217 from the PA protein of influenza virus strain A/X-31) was incubated with 1 μg (16.7 nM) of single-stranded circular DNA plasmid M13mp18 (Bayou Biolabs, Metairie, Louisiana) in the presence of the test compounds and at a final volume of 25 μL. The assay buffer contained 50 mM Tris-HCl pH 8, 100 mM NaCl, 10 mM β-mercaptoethanol and 1 mM MnCl2. METHODS
42 53 presence of protein_state After incubation at 37 °C for 24 h in the presence of serial dilutions of the test compounds, the ONE-Glo luciferase assay system (Promega, Madison, WI) was used to determine luciferase activity. METHODS
53 57 EC99 evidence The compound concentration values causing a 2-log10 (EC99) and a 1-log10 (EC90) reduction in viral RNA (vRNA) copy number at 24 h p.i., as compared to the virus control receiving no compound, were calculated by interpolation from data of at least three experiments. METHODS
74 78 EC90 evidence The compound concentration values causing a 2-log10 (EC99) and a 1-log10 (EC90) reduction in viral RNA (vRNA) copy number at 24 h p.i., as compared to the virus control receiving no compound, were calculated by interpolation from data of at least three experiments. METHODS
17 25 PANΔLoop mutant A PAN construct (PANΔLoop) with a loop (residues 5172) deleted and replaced with GGS from A/California/04/2009 H1N1 strain was used for the crystallographic studies. METHODS
21 29 PANΔLoop mutant The apo structure of PANΔLoop (PDB ID: 5DES) was used as starting model for molecular replacement. METHODS
52 61 influenza taxonomy_domain Chemical structures of some prototype inhibitors of influenza virus endonuclease. FIG
62 67 virus taxonomy_domain Chemical structures of some prototype inhibitors of influenza virus endonuclease. FIG
68 80 endonuclease protein_type Chemical structures of some prototype inhibitors of influenza virus endonuclease. FIG
22 38 enzymatic assays experimental_method Inhibitor activity in enzymatic assays (IC50, μM) as reported in: aref., bref., cref., dref.. FIG
40 44 IC50 evidence Inhibitor activity in enzymatic assays (IC50, μM) as reported in: aref., bref., cref., dref.. FIG
22 38 N-acylhydrazones chemical General synthesis for N-acylhydrazones 127 and hydrazides 28 and 29 (A). FIG
39 43 127 chemical General synthesis for N-acylhydrazones 127 and hydrazides 28 and 29 (A). FIG
48 58 hydrazides chemical General synthesis for N-acylhydrazones 127 and hydrazides 28 and 29 (A). FIG
59 61 28 chemical General synthesis for N-acylhydrazones 127 and hydrazides 28 and 29 (A). FIG
66 68 29 chemical General synthesis for N-acylhydrazones 127 and hydrazides 28 and 29 (A). FIG
33 37 127 chemical Chemical structures of compounds 127 (B). FIG
62 66 127 chemical Overview of the structure-activity relationship for compounds 127. FIG
48 64 N-acylhydrazones chemical Scheme of possible binding modes of the studied N-acylhydrazones. FIG
25 44 GOLD cluster docked experimental_method First (A) and second (B) GOLD cluster docked solutions of compound 23 (orange and cyan, respectively) in complex with PA endonuclease. FIG
67 69 23 chemical First (A) and second (B) GOLD cluster docked solutions of compound 23 (orange and cyan, respectively) in complex with PA endonuclease. FIG
102 117 in complex with protein_state First (A) and second (B) GOLD cluster docked solutions of compound 23 (orange and cyan, respectively) in complex with PA endonuclease. FIG
118 120 PA protein First (A) and second (B) GOLD cluster docked solutions of compound 23 (orange and cyan, respectively) in complex with PA endonuclease. FIG
121 133 endonuclease protein_type First (A) and second (B) GOLD cluster docked solutions of compound 23 (orange and cyan, respectively) in complex with PA endonuclease. FIG
20 26 pocket site Key residues of the pocket are presented using PyMOL [ http://www.pymol.org] and LIGPLUS [Laskowski, R. A.; Swindells, M. B. Journal of chemical information and modeling 2011, 51, 2778]. FIG
81 88 LIGPLUS experimental_method Key residues of the pocket are presented using PyMOL [ http://www.pymol.org] and LIGPLUS [Laskowski, R. A.; Swindells, M. B. Journal of chemical information and modeling 2011, 51, 2778]. FIG
20 26 pocket site Key residues of the pocket are presented using PyMOL [ http://www.pymol.org] and LIGPLUS [Laskowski, R. A.; Swindells, M. B. Journal of chemical information and modeling 2011, 51, 2778]. FIG
81 88 LIGPLUS experimental_method Key residues of the pocket are presented using PyMOL [ http://www.pymol.org] and LIGPLUS [Laskowski, R. A.; Swindells, M. B. Journal of chemical information and modeling 2011, 51, 2778]. FIG
0 14 Hydrogen bonds bond_interaction Hydrogen bonds are illustrated by dotted lines, while the divalent metal ions are shown as purple spheres. FIG
71 90 GOLD cluster docked experimental_method Schematic drawings of the interactions of the first (C) and second (D) GOLD cluster docked solutions generated using LIGPLUS. FIG
117 124 LIGPLUS experimental_method Schematic drawings of the interactions of the first (C) and second (D) GOLD cluster docked solutions generated using LIGPLUS. FIG
17 31 hydrogen bonds bond_interaction Dashed lines are hydrogen bonds and ‘eyelashes’ show residues involved in hydrophobic interactions. FIG
74 98 hydrophobic interactions bond_interaction Dashed lines are hydrogen bonds and ‘eyelashes’ show residues involved in hydrophobic interactions. FIG
17 31 hydrogen bonds bond_interaction Dashed lines are hydrogen bonds and ‘eyelashes’ show residues involved in hydrophobic interactions. FIG
74 98 hydrophobic interactions bond_interaction Dashed lines are hydrogen bonds and ‘eyelashes’ show residues involved in hydrophobic interactions. FIG
29 31 15 chemical (A) Binding mode of compound 15 (orange) in complex with PA endonuclease. FIG
41 56 in complex with protein_state (A) Binding mode of compound 15 (orange) in complex with PA endonuclease. FIG
57 59 PA protein (A) Binding mode of compound 15 (orange) in complex with PA endonuclease. FIG
60 72 endonuclease protein_type (A) Binding mode of compound 15 (orange) in complex with PA endonuclease. FIG
0 14 Hydrogen bonds bond_interaction Hydrogen bonds are illustrated by dotted lines while the divalent metal ions are shown as purple spheres. FIG
54 56 15 chemical (B) Schematic drawing of the interactions of compound 15 generated using LIGPLUS. FIG
73 80 LIGPLUS experimental_method (B) Schematic drawing of the interactions of compound 15 generated using LIGPLUS. FIG
0 17 Crystal structure evidence Crystal structure of PANΔLoop in complex with compound 23. FIG
21 29 PANΔLoop mutant Crystal structure of PANΔLoop in complex with compound 23. FIG
30 45 in complex with protein_state Crystal structure of PANΔLoop in complex with compound 23. FIG
55 57 23 chemical Crystal structure of PANΔLoop in complex with compound 23. FIG
0 11 Active site site Active site residues are shown in sticks with green carbons, manganese atoms are shown as purple spheres and water molecules as red spheres. FIG
61 70 manganese chemical Active site residues are shown in sticks with green carbons, manganese atoms are shown as purple spheres and water molecules as red spheres. FIG
109 114 water chemical Active site residues are shown in sticks with green carbons, manganese atoms are shown as purple spheres and water molecules as red spheres. FIG
9 11 23 chemical Compound 23 is shown in sticks with yellow carbons. FIG
0 27 2Fo-Fc electron density map evidence 2Fo-Fc electron density map contoured at 1σ is shown as blue mesh. FIG
0 14 Hydrogen bonds bond_interaction Hydrogen bonds and metal coordination are shown with dotted lines. FIG
19 37 metal coordination bond_interaction Hydrogen bonds and metal coordination are shown with dotted lines. FIG
4 10 H-bond bond_interaction The H-bond distances from the side chain carboxyl group of Glu26 to p-OH and m-OH of the trihydroxyphenyl group of the inhibitor are 2.7 Å and 3.0 Å, respectively. FIG
59 64 Glu26 residue_name_number The H-bond distances from the side chain carboxyl group of Glu26 to p-OH and m-OH of the trihydroxyphenyl group of the inhibitor are 2.7 Å and 3.0 Å, respectively. FIG
4 10 H-bond bond_interaction The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
43 48 Lys34 residue_name_number The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
101 107 H-bond bond_interaction The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
124 129 water chemical The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
198 206 H-bonded bond_interaction The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
228 234 Tyr130 residue_name_number The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
261 278 Crystal structure evidence The H-bond distance from the side chain of Lys34 to p-OH of the trihydroxyphenyl group is 3.6 Å. The H-bond distance to the water molecule from m-OH of the galloyl moiety is 3.0 Å, which in turn is H-bonded to the side chain of Tyr130 with a distance of 2.7 Å. Crystal structure has been deposited in the RCSB Protein Data Bank with PDB ID: 5EGA. FIG
27 43 N-acylhydrazones chemical Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
44 48 127 chemical Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
53 62 hydrazide chemical Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
63 65 28 chemical Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
73 88 enzymatic assay experimental_method Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
94 103 influenza taxonomy_domain Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
104 109 virus taxonomy_domain Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
110 112 PA protein Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
113 117 Nter structure_element Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
118 130 endonuclease protein_type Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
138 169 cellular influenza virus assays experimental_method Inhibitory activity of the N-acylhydrazones 127 and hydrazide 28 in the enzymatic assay with influenza virus PA-Nter endonuclease, or in cellular influenza virus assays. TABLE
0 21 "Compound Enzyme assay" experimental_method "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
27 29 PA protein "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
36 53 Virus yield assay experimental_method "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
57 66 influenza taxonomy_domain "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
67 72 virus taxonomy_domain "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
94 119 vRNP reconstitution assay experimental_method "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
200 204 IC50 evidence "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
205 209 EC99 evidence "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
210 214 EC90 evidence "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
215 219 CC50 evidence "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
220 224 EC50 evidence "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
225 229 CC50 evidence "Compound Enzyme assay with PA-Ntera Virus yield assay in influenza virus-infected MDCK cellsb vRNP reconstitution assay in HEK293T cellsc Antiviral activity Cytotoxicity SId Activity Cytotoxicity IC50 EC99 EC90 CC50 EC50 CC50 (1) 24 NDf ND ND   107 >200 (2) >500 ND ND ND   >100 >200 (3) >500 ND ND >200   5.9 48 (4) >500 ND ND >200   6.3 33 (5) 67 >25 >25146   2.6 10 (6) >500 >50 >50 >200   15 14 (7) 54 172 100 >200 >2.0 3.2 8.9 (8) >500 >12.5 >12.5 >200   1.9 15 (9) 34 16 5.3 >200 >38 5.5 >200 (10) 68 14 8.5 111 >13 0.40 132 (11) 45 30 12 >200 >17 5.6 >200 (12) >500 >12.5 >12.5 >200   20 39 (13) 69 71 34 >200 >5.9 6.3 >200 (14) >500 63 37 >200 >5.4 2.3 >200 (15) 8.9 18 7.517223 14 >200 (16) 454 67 28 >200 >7.1 5.2 >200 (17) 482 21 8.1 >200 >25 7.1 >200 (18) 83 6.2 2.2 >200 >91 3.3 >200 (19) >500 53 26 >200 >7.7 5.7 >200 (20) 18 35 11 >200 >18 2.2 >200 (21) 13 8.3 3.6 >200 >56 2.5 >200 (22) 75 7.4 3.4 >200 >59 0.42 >200 (23) 8.7 11 3.5 >200 >57 3.1 >200 (24) 131 58 26 >200 >7.7 25 >200 (25) 40 132 70 >200 >2.9 4.1 >200 (26) 30 36 13 >200 >15 5.5 >200 (27) 36 ND ND ND   21 >200 (28) 40 158 85 >200 >2.4 7.2 >200 DPBAe 5.3 ND ND ND   ND ND Ribavirin ND 13 8.5 >200 >24 9.4 >200 " TABLE
13 15 PA protein aRecombinant PA-Nter was incubated with the ssDNA plasmid substrate, a Mn2+-containing buffer and test compounds. TABLE
16 20 Nter structure_element aRecombinant PA-Nter was incubated with the ssDNA plasmid substrate, a Mn2+-containing buffer and test compounds. TABLE
25 34 incubated experimental_method aRecombinant PA-Nter was incubated with the ssDNA plasmid substrate, a Mn2+-containing buffer and test compounds. TABLE
44 49 ssDNA chemical aRecombinant PA-Nter was incubated with the ssDNA plasmid substrate, a Mn2+-containing buffer and test compounds. TABLE
71 75 Mn2+ chemical aRecombinant PA-Nter was incubated with the ssDNA plasmid substrate, a Mn2+-containing buffer and test compounds. TABLE
4 8 IC50 evidence The IC50 represents the compound concentration (in μM) required to obtain 50% inhibition of cleavage, calculated by nonlinear least-squares regression analysis (using GraphPad Prism software) of the results from 24 independent experiments. TABLE
116 159 nonlinear least-squares regression analysis experimental_method The IC50 represents the compound concentration (in μM) required to obtain 50% inhibition of cleavage, calculated by nonlinear least-squares regression analysis (using GraphPad Prism software) of the results from 24 independent experiments. TABLE
31 42 influenza A taxonomy_domain bMDCK cells were infected with influenza A virus (strain A/PR/8/34) and incubated with the compounds during 24 h. The virus yield in the supernatant was assessed by real-time qPCR. TABLE
43 48 virus taxonomy_domain bMDCK cells were infected with influenza A virus (strain A/PR/8/34) and incubated with the compounds during 24 h. The virus yield in the supernatant was assessed by real-time qPCR. TABLE
118 123 virus taxonomy_domain bMDCK cells were infected with influenza A virus (strain A/PR/8/34) and incubated with the compounds during 24 h. The virus yield in the supernatant was assessed by real-time qPCR. TABLE
165 179 real-time qPCR experimental_method bMDCK cells were infected with influenza A virus (strain A/PR/8/34) and incubated with the compounds during 24 h. The virus yield in the supernatant was assessed by real-time qPCR. TABLE
4 8 EC99 evidence The EC99 and EC90 values represent the compound concentrations (in μM) producing a 2-log10 or 1-log10 reduction in virus titer, respectively, determined in 23 independent experiments. TABLE
13 17 EC90 evidence The EC99 and EC90 values represent the compound concentrations (in μM) producing a 2-log10 or 1-log10 reduction in virus titer, respectively, determined in 23 independent experiments. TABLE
115 120 virus taxonomy_domain The EC99 and EC90 values represent the compound concentrations (in μM) producing a 2-log10 or 1-log10 reduction in virus titer, respectively, determined in 23 independent experiments. TABLE
74 78 CC50 evidence The cytotoxicity, assessed in uninfected MDCK cells, was expressed as the CC50 value (50% cytotoxic concentration, determined with the MTS cell viability assay, in μM). TABLE
135 159 MTS cell viability assay experimental_method The cytotoxicity, assessed in uninfected MDCK cells, was expressed as the CC50 value (50% cytotoxic concentration, determined with the MTS cell viability assay, in μM). TABLE
20 34 co-transfected experimental_method cHEK293T cells were co-transfected with the four vRNP-reconstituting plasmids and the luciferase reporter plasmid in the presence of the test compounds. TABLE
49 53 vRNP complex_assembly cHEK293T cells were co-transfected with the four vRNP-reconstituting plasmids and the luciferase reporter plasmid in the presence of the test compounds. TABLE
121 132 presence of protein_state cHEK293T cells were co-transfected with the four vRNP-reconstituting plasmids and the luciferase reporter plasmid in the presence of the test compounds. TABLE
4 8 EC50 evidence The EC50 represents the compound concentration (in μM) producing 50% reduction in vRNP-driven firefly reporter signal, estimated at 24 h after transfection. TABLE
82 86 vRNP complex_assembly The EC50 represents the compound concentration (in μM) producing 50% reduction in vRNP-driven firefly reporter signal, estimated at 24 h after transfection. TABLE
4 8 EC50 evidence The EC50 value was derived from data from 24 independent experiments, by nonlinear least-squares regression analysis (using GraphPad Prism software). TABLE
74 117 nonlinear least-squares regression analysis experimental_method The EC50 value was derived from data from 24 independent experiments, by nonlinear least-squares regression analysis (using GraphPad Prism software). TABLE
4 8 CC50 evidence The CC50 (in μM), i.e. the 50% cytotoxic concentration, was determined in untransfected HEK293T cells by MTS cell viability assay. TABLE
105 129 MTS cell viability assay experimental_method The CC50 (in μM), i.e. the 50% cytotoxic concentration, was determined in untransfected HEK293T cells by MTS cell viability assay. TABLE
0 3 dSI evidence dSI, selectivity index, defined as the ratio between the CC50 and EC90. TABLE
5 22 selectivity index evidence dSI, selectivity index, defined as the ratio between the CC50 and EC90. TABLE
57 61 CC50 evidence dSI, selectivity index, defined as the ratio between the CC50 and EC90. TABLE
66 70 EC90 evidence dSI, selectivity index, defined as the ratio between the CC50 and EC90. TABLE
0 5 eDPBA chemical eDPBA, 2,4-dioxo-4-phenylbutanoic acid. TABLE
7 38 2,4-dioxo-4-phenylbutanoic acid chemical eDPBA, 2,4-dioxo-4-phenylbutanoic acid. TABLE