README.md

---
license: bsd-3-clause-clear
language: 
- ind
pretty_name: Bioner Id
task_categories: 
- named-entity-recognition
tags: 
- named-entity-recognition
---

This dataset taken from online health consultation platform Alodokter.com which has been annotated by two medical doctors. Data were annotated using IOB in CoNLL format.

Dataset contains 2600 medical answers by doctors from 2017-2020. Two medical experts were assigned to annotate the data into two entity types: DISORDERS and ANATOMY.
The topics of answers are: diarrhea, HIV-AIDS, nephrolithiasis and TBC, which marked as high-risk dataset from WHO.


## Languages

ind

## Supported Tasks

Named Entity Recognition
    
## Dataset Usage
### Using `datasets` library
```
    from datasets import load_dataset
    dset = datasets.load_dataset("SEACrowd/bioner_id", trust_remote_code=True)
```
### Using `seacrowd` library
```import seacrowd as sc
# Load the dataset using the default config
    dset = sc.load_dataset("bioner_id", schema="seacrowd")
# Check all available subsets (config names) of the dataset
    print(sc.available_config_names("bioner_id"))
# Load the dataset using a specific config
    dset = sc.load_dataset_by_config_name(config_name="<config_name>")
```
    
    More details on how to load the `seacrowd` library can be found [here](https://github.com/SEACrowd/seacrowd-datahub?tab=readme-ov-file#how-to-use).
    

## Dataset Homepage

[https://huggingface.co/datasets/abid/indonesia-bioner-dataset](https://huggingface.co/datasets/abid/indonesia-bioner-dataset)

## Dataset Version

Source: 1.0.0. SEACrowd: 2024.06.20.

## Dataset License

BSD 3-clause Clear license (bsd-3-clause-clear)

## Citation

If you are using the **Bioner Id** dataloader in your work, please cite the following:
```
@article{abdillah2023pengenalan,
  title={Pengenalan Entitas Biomedis dalam Teks Konsultasi Kesehatan Online Berbahasa Indonesia Berbasis Arsitektur Transformers},
  author={Abdillah, Abid Famasya and Purwitasari, Diana and Juanita, Safitri and Purnomo, Mauridhi Hery},
  year={2023},
  month=feb,
  journal={Jurnal Teknologi Informasi dan Ilmu Komputer},
  volume={10},
  number={1},
  pages={131--140}
}


@article{lovenia2024seacrowd,
    title={SEACrowd: A Multilingual Multimodal Data Hub and Benchmark Suite for Southeast Asian Languages}, 
    author={Holy Lovenia and Rahmad Mahendra and Salsabil Maulana Akbar and Lester James V. Miranda and Jennifer Santoso and Elyanah Aco and Akhdan Fadhilah and Jonibek Mansurov and Joseph Marvin Imperial and Onno P. Kampman and Joel Ruben Antony Moniz and Muhammad Ravi Shulthan Habibi and Frederikus Hudi and Railey Montalan and Ryan Ignatius and Joanito Agili Lopo and William Nixon and Börje F. Karlsson and James Jaya and Ryandito Diandaru and Yuze Gao and Patrick Amadeus and Bin Wang and Jan Christian Blaise Cruz and Chenxi Whitehouse and Ivan Halim Parmonangan and Maria Khelli and Wenyu Zhang and Lucky Susanto and Reynard Adha Ryanda and Sonny Lazuardi Hermawan and Dan John Velasco and Muhammad Dehan Al Kautsar and Willy Fitra Hendria and Yasmin Moslem and Noah Flynn and Muhammad Farid Adilazuarda and Haochen Li and Johanes Lee and R. Damanhuri and Shuo Sun and Muhammad Reza Qorib and Amirbek Djanibekov and Wei Qi Leong and Quyet V. Do and Niklas Muennighoff and Tanrada Pansuwan and Ilham Firdausi Putra and Yan Xu and Ngee Chia Tai and Ayu Purwarianti and Sebastian Ruder and William Tjhi and Peerat Limkonchotiwat and Alham Fikri Aji and Sedrick Keh and Genta Indra Winata and Ruochen Zhang and Fajri Koto and Zheng-Xin Yong and Samuel Cahyawijaya},
    year={2024},
    eprint={2406.10118},
    journal={arXiv preprint arXiv: 2406.10118}
}

```