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- README.md +30 -0
- test/data.mdb +0 -0
- test/lock.mdb +0 -0
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- train/lock.mdb +0 -0
- valid/data.mdb +0 -0
- valid/lock.mdb +0 -0
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README.md
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---
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license: mit
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---
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---
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license: mit
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---
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# Description
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Structural Class Prediction is a multi-class classification task to predict the correct structural class of given protein. This task is is built on the SCOP database.
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# Splits
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**Structure type:** PDB
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The dataset is from [**ProteinShake Building datasets and benchmarks for deep learning on protein structures**](https://academic.oup.com/bioinformatics/article/33/21/3387/3931857). We use the splits based on 70% structure similarity, with the number of training, validation and test set shown below:
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- Train: 7990
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- Valid: 955
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- Test: 1005
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# Data format
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We organize all data in LMDB format. The architecture of the databse is like:
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**length:** The number of samples
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**0:**
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- **name:** The PDB ID of the protein
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- **chain:** The chain ID of the protein
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- **seq:** The structure-aware sequence
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- **plddt**: pLDDT values at all positions
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- **label:** classification label of the sequence
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**1:**
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**···**
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test/data.mdb
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test/lock.mdb
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train/data.mdb
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version https://git-lfs.github.com/spec/v1
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oid sha256:1e878c1db89bef82f1811e8542e46f2a2e29e7fea7da598dda42cb1ab2d4c487
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size 6107136
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train/lock.mdb
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Binary file (8.19 kB). View file
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valid/data.mdb
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valid/lock.mdb
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