Zehui127127
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Upload 6 files
Browse filesadd raw edge files
- .gitattributes +3 -0
- edge/CTD_chem_gene_ixn_types.tsv +79 -0
- edge/CTD_chem_gene_ixns.tsv +3 -0
- edge/CTD_chem_pheno_ixns.tsv +3 -0
- edge/CTD_chemicals_diseases.tsv +3 -0
- edge/CTD_genes_diseases.tsv +0 -0
- edge/CTD_genes_pathways.tsv +0 -0
.gitattributes
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@@ -56,3 +56,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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extra/CTD_exposure_events.tsv filter=lfs diff=lfs merge=lfs -text
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node/CTD_chemicals.tsv filter=lfs diff=lfs merge=lfs -text
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node/CTD_genes.tsv filter=lfs diff=lfs merge=lfs -text
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extra/CTD_exposure_events.tsv filter=lfs diff=lfs merge=lfs -text
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node/CTD_chemicals.tsv filter=lfs diff=lfs merge=lfs -text
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node/CTD_genes.tsv filter=lfs diff=lfs merge=lfs -text
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edge/CTD_chem_gene_ixns.tsv filter=lfs diff=lfs merge=lfs -text
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edge/CTD_chem_pheno_ixns.tsv filter=lfs diff=lfs merge=lfs -text
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edge/CTD_chemicals_diseases.tsv filter=lfs diff=lfs merge=lfs -text
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edge/CTD_chem_gene_ixn_types.tsv
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# The Comparative Toxicogenomics Database (CTD) - http://ctdbase.org/
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# Copyright 2002-2012 MDI Biological Laboratory. All rights reserved.
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# Copyright 2012-2016 MDI Biological Laboratory & NC State University. All rights reserved.
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#
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# Use is subject to the terms set forth at http://ctdbase.org/about/legal.jsp
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# These terms include:
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#
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# 1. All forms of publication that use or rely on CTD data (e.g.,
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# web sites, research papers, databases, applications, products, etc.)
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# must cite CTD.
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# Citation guidelines: http://ctdbase.org/about/publications/#citing
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#
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# 2. All electronic or online applications must include hyperlinks from
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# contexts that use CTD data to the applicable CTD data pages.
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# Linking instructions: http://ctdbase.org/help/linking.jsp
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#
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# 3. You must notify CTD and describe how you are using the our data:
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# http://ctdbase.org/help/contact.go
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#
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# More information: http://ctdbase.org/downloads/
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#
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# Report created: Fri Jul 06 11:10:38 EDT 2012
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#
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# Fields:
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# TypeName Code Description ParentCode
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#
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abundance abu The abundance of a chemical (if chemical synthesis is not known).
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activity act An elemental function of a molecule.
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binding b A molecular interaction.
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cotreatment w Involving the use of two or more chemicals simultaneously.
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expression exp The expression of a gene product.
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folding fol The bending and positioning of a molecule to achieve conformational integrity.
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localization loc Part of the cell where a molecule resides.
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metabolic processing met The biochemical alteration of a molecule's structure (does not include changes in expression, stability, folding, localization, splicing, or transport).
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acetylation ace The addition of an acetyl group. met
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acylation acy The addition of an acyl group. met
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alkylation alk The addition of an alkyl group. met
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amination ami The addition of an amine group. met
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carbamoylation car The addition of a carbamoyl group. met
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carboxylation cox The addition of a carboxyl group. met
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chemical synthesis csy A biochemical event resulting in a new chemical product. met
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degradation deg Catabolism or breakdown. met
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cleavage clv The processing or splitting of a molecule, not necessarily leading to the destruction of the molecule. deg
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hydrolysis hyd The splitting of a molecule via the specific use of water. clv
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ethylation eth The addition of an ethyl group. met
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glutathionylation glt The addition of a glutathione group. met
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glycation gyc The non-enzymatic addition of a sugar. met
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glycosylation gly The addition of a sugar group. met
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glucuronidation glc The addition of a sugar group to form a glucuronide, typically part of an inactivating or detoxifying reaction. gly
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N-linked glycosylation ngl The addition of a sugar group to an amide nitrogen. gly
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O-linked glycosylation ogl The addition of a sugar group to a hydroxyl group. gly
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hydroxylation hdx The addition of a hydroxy group. met
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lipidation lip The addition of a lipid group. met
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farnesylation far The addition of a farnesyl group. lip
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geranoylation ger The addition of a geranoyl group. lip
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myristoylation myr The addition of a myristoyl group. lip
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palmitoylation pal The addition of a palmitoyl group. lip
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prenylation pre The addition of a prenyl group. lip
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methylation myl The addition of a methyl group. met
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nitrosation nit The addition of a nitroso or nitrosyl group. met
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nucleotidylation nuc The addition of a nucleotidyl group. met
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oxidation oxd The loss of electrons. met
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phosphorylation pho The addition of a phosphate group. met
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reduction red The gain of electrons. met
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ribosylation rib The addition of a ribosyl group. met
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ADP-ribosylation arb The addition of a ADP-ribosyl group. rib
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sulfation sul The addition of a sulfate group. met
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sumoylation sum The addition of a SUMO group. met
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ubiquitination ubq The addition of an ubiquitin group. met
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mutagenesis mut The genetic alteration of a gene product.
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reaction rxn Any general biochemical or molecular event.
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response to substance rec Resistance or sensitivity to a substance.
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splicing spl The removal of introns to generate mRNA.
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stability sta Overall molecular integrity.
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transport trt The movement of a molecule into or out of a cell.
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secretion sec The movement of a molecule out of a cell (by less specific means than export). trt
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export ext The movement of a molecule out of a cell (by more specific means than secretion). sec
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uptake upt The movement of a molecule into a cell (by less specific means than import). trt
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import imt The movement of a molecule into a cell (by more specific means than uptake). upt
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edge/CTD_chem_gene_ixns.tsv
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version https://git-lfs.github.com/spec/v1
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oid sha256:514e605180bdd356118dc2fcd3397a6d2da3a8af21983e8787ae739e2fb7b9b5
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size 523462136
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edge/CTD_chem_pheno_ixns.tsv
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version https://git-lfs.github.com/spec/v1
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oid sha256:3e286b2cf5914ee3eac9c9a1618146f9d9510357e0f732e9c01e299a54f2b88d
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size 258295919
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edge/CTD_chemicals_diseases.tsv
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version https://git-lfs.github.com/spec/v1
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oid sha256:bfcf2cf61b24ce68d6793b6679c6b704792c8a5d6e3bca3780f9901e4cfd618d
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size 801125425
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edge/CTD_genes_diseases.tsv
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edge/CTD_genes_pathways.tsv
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