adding meddlr testing data
Browse files- test-data/sample-gdrive-folder/hello-world-2.txt +1 -0
- test-data/sample-gdrive-folder/hello-world.txt +1 -0
- test-data/test-exps/basic-cpu-orig/config.yaml +190 -0
- test-data/test-exps/basic-cpu-orig/events.out.tfevents.1641656281.vigata.1085133.0 +3 -0
- test-data/test-exps/basic-cpu-orig/last_checkpoint +1 -0
- test-data/test-exps/basic-cpu-orig/log.txt +731 -0
- test-data/test-exps/basic-cpu-orig/metrics.json +80 -0
- test-data/test-exps/basic-cpu-orig/model_0000199.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0000399.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0000599.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0000799.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0000999.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0001199.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0001399.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_0001599.pth +3 -0
- test-data/test-exps/basic-cpu-orig/model_final.pth +3 -0
- test-data/test-exps/basic-cpu/config.yaml +190 -0
- test-data/test-exps/basic-cpu/last_checkpoint +1 -0
- test-data/test-exps/basic-cpu/metrics.json +80 -0
- test-data/test-exps/basic-cpu/model_0000399.pth +0 -0
- test-data/test-exps/basic-cpu/model_0000799.pth +0 -0
- test-data/test-exps/basic-cpu/model_0001399.pth +0 -0
- test-data/test-exps/basic-cpu/model_final.pth +0 -0
- test-data/test-model/config-with-deps.yaml +188 -0
- test-data/test-model/config.yaml +186 -0
- test-data/test-model/model-cpu.pt +3 -0
test-data/sample-gdrive-folder/hello-world-2.txt
ADDED
@@ -0,0 +1 @@
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1 |
+
Hello world!
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test-data/sample-gdrive-folder/hello-world.txt
ADDED
@@ -0,0 +1 @@
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1 |
+
Hello world!
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test-data/test-exps/basic-cpu-orig/config.yaml
ADDED
@@ -0,0 +1,190 @@
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1 |
+
AUG_TEST:
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2 |
+
UNDERSAMPLE:
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3 |
+
ACCELERATIONS: &id001
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4 |
+
- 6
|
5 |
+
AUG_TRAIN:
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6 |
+
MOTION_P: 0.2
|
7 |
+
MRI_RECON:
|
8 |
+
AUG_SENSITIVITY_MAPS: true
|
9 |
+
SCHEDULER_P:
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10 |
+
IGNORE: false
|
11 |
+
TRANSFORMS: []
|
12 |
+
NOISE_P: 0.2
|
13 |
+
UNDERSAMPLE:
|
14 |
+
ACCELERATIONS: *id001
|
15 |
+
CALIBRATION_SIZE: 20
|
16 |
+
CENTER_FRACTIONS: []
|
17 |
+
MAX_ATTEMPTS: 30
|
18 |
+
NAME: PoissonDiskMaskFunc
|
19 |
+
USE_MOTION: false
|
20 |
+
USE_NOISE: false
|
21 |
+
CUDNN_BENCHMARK: false
|
22 |
+
DATALOADER:
|
23 |
+
ALT_SAMPLER:
|
24 |
+
PERIOD_SUPERVISED: 1
|
25 |
+
PERIOD_UNSUPERVISED: 1
|
26 |
+
DATA_KEYS: []
|
27 |
+
DROP_LAST: true
|
28 |
+
FILTER:
|
29 |
+
BY: []
|
30 |
+
GROUP_SAMPLER:
|
31 |
+
AS_BATCH_SAMPLER: false
|
32 |
+
BATCH_BY: []
|
33 |
+
NUM_WORKERS: 8
|
34 |
+
PREFETCH_FACTOR: 2
|
35 |
+
SAMPLER_TRAIN: ''
|
36 |
+
SUBSAMPLE_TRAIN:
|
37 |
+
NUM_TOTAL: -1
|
38 |
+
NUM_TOTAL_BY_GROUP: []
|
39 |
+
NUM_UNDERSAMPLED: 0
|
40 |
+
NUM_VAL: -1
|
41 |
+
NUM_VAL_BY_GROUP: []
|
42 |
+
SEED: 1000
|
43 |
+
DATASETS:
|
44 |
+
TEST:
|
45 |
+
- mridata_knee_2019_test
|
46 |
+
TRAIN:
|
47 |
+
- mridata_knee_2019_train
|
48 |
+
VAL:
|
49 |
+
- mridata_knee_2019_val
|
50 |
+
DESCRIPTION:
|
51 |
+
BRIEF: ''
|
52 |
+
ENTITY_NAME: ss_recon
|
53 |
+
EXP_NAME: ''
|
54 |
+
PROJECT_NAME: ss_recon
|
55 |
+
TAGS: []
|
56 |
+
MODEL:
|
57 |
+
A2R:
|
58 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
59 |
+
USE_SUPERVISED_CONSISTENCY: false
|
60 |
+
CONSISTENCY:
|
61 |
+
AUG:
|
62 |
+
MOTION:
|
63 |
+
RANGE:
|
64 |
+
- 0.2
|
65 |
+
- 0.5
|
66 |
+
SCHEDULER:
|
67 |
+
WARMUP_ITERS: 0
|
68 |
+
WARMUP_METHOD: ''
|
69 |
+
MRI_RECON:
|
70 |
+
AUG_SENSITIVITY_MAPS: true
|
71 |
+
SCHEDULER_P:
|
72 |
+
IGNORE: false
|
73 |
+
TRANSFORMS: []
|
74 |
+
NOISE:
|
75 |
+
MASK:
|
76 |
+
RHO: 1.0
|
77 |
+
SCHEDULER:
|
78 |
+
WARMUP_ITERS: 0
|
79 |
+
WARMUP_METHOD: ''
|
80 |
+
STD_DEV: &id002
|
81 |
+
- 1
|
82 |
+
LATENT_LOSS_NAME: mag_l1
|
83 |
+
LATENT_LOSS_WEIGHT: 0.1
|
84 |
+
LOSS_NAME: l1
|
85 |
+
LOSS_WEIGHT: 0.1
|
86 |
+
NUM_LATENT_LAYERS: 1
|
87 |
+
USE_CONSISTENCY: true
|
88 |
+
USE_LATENT: false
|
89 |
+
CS:
|
90 |
+
MAX_ITER: 200
|
91 |
+
REGULARIZATION: 0.005
|
92 |
+
DENOISING:
|
93 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
94 |
+
NOISE:
|
95 |
+
STD_DEV: *id002
|
96 |
+
USE_FULLY_SAMPLED_TARGET: true
|
97 |
+
USE_FULLY_SAMPLED_TARGET_EVAL: null
|
98 |
+
DEVICE: cuda
|
99 |
+
M2R:
|
100 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
101 |
+
USE_SUPERVISED_CONSISTENCY: false
|
102 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
103 |
+
N2R:
|
104 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
105 |
+
USE_SUPERVISED_CONSISTENCY: false
|
106 |
+
NM2R:
|
107 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
108 |
+
USE_SUPERVISED_CONSISTENCY: false
|
109 |
+
NORMALIZER:
|
110 |
+
KEYWORDS: []
|
111 |
+
NAME: TopMagnitudeNormalizer
|
112 |
+
RECON_LOSS:
|
113 |
+
NAME: l1
|
114 |
+
RENORMALIZE_DATA: true
|
115 |
+
SEG:
|
116 |
+
ACTIVATION: sigmoid
|
117 |
+
CLASSES: []
|
118 |
+
INCLUDE_BACKGROUND: false
|
119 |
+
SSDU:
|
120 |
+
MASKER:
|
121 |
+
PARAMS: {}
|
122 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
123 |
+
UNET:
|
124 |
+
BLOCK_ORDER:
|
125 |
+
- conv
|
126 |
+
- relu
|
127 |
+
- conv
|
128 |
+
- relu
|
129 |
+
- batchnorm
|
130 |
+
- dropout
|
131 |
+
CHANNELS: 32
|
132 |
+
DROPOUT: 0.0
|
133 |
+
IN_CHANNELS: 2
|
134 |
+
NORMALIZE: false
|
135 |
+
NUM_POOL_LAYERS: 4
|
136 |
+
OUT_CHANNELS: 2
|
137 |
+
UNROLLED:
|
138 |
+
BLOCK_ARCHITECTURE: ResNet
|
139 |
+
CONV_BLOCK:
|
140 |
+
ACTIVATION: relu
|
141 |
+
NORM: none
|
142 |
+
NORM_AFFINE: false
|
143 |
+
ORDER:
|
144 |
+
- norm
|
145 |
+
- act
|
146 |
+
- drop
|
147 |
+
- conv
|
148 |
+
DROPOUT: 0.0
|
149 |
+
FIX_STEP_SIZE: false
|
150 |
+
KERNEL_SIZE:
|
151 |
+
- 3
|
152 |
+
NUM_EMAPS: 1
|
153 |
+
NUM_FEATURES: 128
|
154 |
+
NUM_RESBLOCKS: 2
|
155 |
+
NUM_UNROLLED_STEPS: 8
|
156 |
+
PADDING: ''
|
157 |
+
SHARE_WEIGHTS: false
|
158 |
+
WEIGHTS: ''
|
159 |
+
OUTPUT_DIR: "results://meddlr/tests/basic-cpu"
|
160 |
+
SEED: -1
|
161 |
+
SOLVER:
|
162 |
+
BASE_LR: 0.0001
|
163 |
+
BIAS_LR_FACTOR: 1.0
|
164 |
+
CHECKPOINT_PERIOD: 200
|
165 |
+
GAMMA: 0.1
|
166 |
+
GRAD_ACCUM_ITERS: 1
|
167 |
+
LR_SCHEDULER_NAME: WarmupMultiStepLR
|
168 |
+
MAX_ITER: 1600
|
169 |
+
MOMENTUM: 0.9
|
170 |
+
OPTIMIZER: Adam
|
171 |
+
STEPS:
|
172 |
+
- 30000
|
173 |
+
TEST_BATCH_SIZE: 2
|
174 |
+
TRAIN_BATCH_SIZE: 1
|
175 |
+
WARMUP_FACTOR: 0.001
|
176 |
+
WARMUP_ITERS: 1000
|
177 |
+
WARMUP_METHOD: linear
|
178 |
+
WEIGHT_DECAY: 0.0001
|
179 |
+
WEIGHT_DECAY_BIAS: 0.0001
|
180 |
+
WEIGHT_DECAY_NORM: 0.0
|
181 |
+
TEST:
|
182 |
+
EVAL_PERIOD: 200
|
183 |
+
EXPECTED_RESULTS: []
|
184 |
+
FLUSH_PERIOD: 0
|
185 |
+
VAL_AS_TEST: true
|
186 |
+
VAL_METRICS:
|
187 |
+
RECON: []
|
188 |
+
TIME_SCALE: iter
|
189 |
+
VERSION: 1
|
190 |
+
VIS_PERIOD: 20
|
test-data/test-exps/basic-cpu-orig/events.out.tfevents.1641656281.vigata.1085133.0
ADDED
@@ -0,0 +1,3 @@
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+
version https://git-lfs.github.com/spec/v1
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2 |
+
oid sha256:9fcc5fac0439a0d47714148c49456ee98b16329b1339f8e8e6d4929b579c0b57
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+
size 62368621
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test-data/test-exps/basic-cpu-orig/last_checkpoint
ADDED
@@ -0,0 +1 @@
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+
model_final.pth
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test-data/test-exps/basic-cpu-orig/log.txt
ADDED
@@ -0,0 +1,731 @@
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1 |
+
[01/08 07:36:30] meddlr INFO: Running in debug mode
|
2 |
+
[01/08 07:36:30] meddlr INFO: Environment info:
|
3 |
+
------------------- ----------------------------------------------------------------------------------------------
|
4 |
+
sys.platform linux
|
5 |
+
Python 3.7.11 (default, Jul 27 2021, 14:32:16) [GCC 7.5.0]
|
6 |
+
numpy 1.20.3
|
7 |
+
PyTorch 1.7.1 @/bmrNAS/people/arjun/miniconda3/envs/meddlr_env/lib/python3.7/site-packages/torch
|
8 |
+
PyTorch debug build False
|
9 |
+
CUDA available False
|
10 |
+
Pillow 8.4.0
|
11 |
+
torchvision 0.8.2 @/bmrNAS/people/arjun/miniconda3/envs/meddlr_env/lib/python3.7/site-packages/torchvision
|
12 |
+
SLURM_JOB_ID slurm not detected
|
13 |
+
------------------- ----------------------------------------------------------------------------------------------
|
14 |
+
PyTorch built with:
|
15 |
+
- GCC 7.3
|
16 |
+
- C++ Version: 201402
|
17 |
+
- Intel(R) oneAPI Math Kernel Library Version 2021.4-Product Build 20210904 for Intel(R) 64 architecture applications
|
18 |
+
- Intel(R) MKL-DNN v1.6.0 (Git Hash 5ef631a030a6f73131c77892041042805a06064f)
|
19 |
+
- OpenMP 201511 (a.k.a. OpenMP 4.5)
|
20 |
+
- NNPACK is enabled
|
21 |
+
- CPU capability usage: AVX
|
22 |
+
- Build settings: BLAS=MKL, BUILD_TYPE=Release, CXX_FLAGS= -Wno-deprecated -fvisibility-inlines-hidden -DUSE_PTHREADPOOL -fopenmp -DNDEBUG -DUSE_FBGEMM -DUSE_QNNPACK -DUSE_PYTORCH_QNNPACK -DUSE_XNNPACK -DUSE_VULKAN_WRAPPER -O2 -fPIC -Wno-narrowing -Wall -Wextra -Werror=return-type -Wno-missing-field-initializers -Wno-type-limits -Wno-array-bounds -Wno-unknown-pragmas -Wno-sign-compare -Wno-unused-parameter -Wno-unused-variable -Wno-unused-function -Wno-unused-result -Wno-unused-local-typedefs -Wno-strict-overflow -Wno-strict-aliasing -Wno-error=deprecated-declarations -Wno-stringop-overflow -Wno-psabi -Wno-error=pedantic -Wno-error=redundant-decls -Wno-error=old-style-cast -fdiagnostics-color=always -faligned-new -Wno-unused-but-set-variable -Wno-maybe-uninitialized -fno-math-errno -fno-trapping-math -Werror=format -Wno-stringop-overflow, PERF_WITH_AVX=1, PERF_WITH_AVX2=1, PERF_WITH_AVX512=1, USE_CUDA=ON, USE_EXCEPTION_PTR=1, USE_GFLAGS=OFF, USE_GLOG=OFF, USE_MKL=ON, USE_MKLDNN=ON, USE_MPI=OFF, USE_NCCL=ON, USE_NNPACK=ON, USE_OPENMP=ON,
|
23 |
+
|
24 |
+
[01/08 07:36:30] meddlr INFO: Command line arguments: Namespace(auto_version=False, config_file='../configs/tests/basic.yaml', debug=True, devices=None, eval_only=False, num_gpus=1, opts=['DATALOADER.NUM_WORKERS', '8', 'SOLVER.MAX_ITER', '1600', 'SOLVER.CHECKPOINT_PERIOD', '200', 'TEST.EVAL_PERIOD', '200'], reproducible=False, restart_iter=False, resume=False)
|
25 |
+
[01/08 07:36:30] meddlr INFO: Contents of args.config_file=../configs/tests/basic.yaml:
|
26 |
+
# Basic testing config
|
27 |
+
# Use this for any testing you may want to do in the future.
|
28 |
+
# The model will be trained for 60 iterations (not epochs)
|
29 |
+
# on the mridata.org 2019 knee dataset.
|
30 |
+
MODEL:
|
31 |
+
UNROLLED:
|
32 |
+
NUM_UNROLLED_STEPS: 8
|
33 |
+
NUM_RESBLOCKS: 2
|
34 |
+
NUM_FEATURES: 128
|
35 |
+
DROPOUT: 0.
|
36 |
+
DATASETS:
|
37 |
+
TRAIN: ("mridata_knee_2019_train",)
|
38 |
+
VAL: ("mridata_knee_2019_val",)
|
39 |
+
TEST: ("mridata_knee_2019_test",)
|
40 |
+
DATALOADER:
|
41 |
+
NUM_WORKERS: 0 # for debugging purposes
|
42 |
+
SOLVER:
|
43 |
+
TRAIN_BATCH_SIZE: 1
|
44 |
+
TEST_BATCH_SIZE: 2
|
45 |
+
CHECKPOINT_PERIOD: 20
|
46 |
+
MAX_ITER: 80
|
47 |
+
TEST:
|
48 |
+
EVAL_PERIOD: 40
|
49 |
+
VIS_PERIOD: 20
|
50 |
+
TIME_SCALE: "iter"
|
51 |
+
OUTPUT_DIR: "results://tests/basic"
|
52 |
+
VERSION: 1
|
53 |
+
[01/08 07:37:52] meddlr INFO: Running in debug mode
|
54 |
+
[01/08 07:37:54] meddlr INFO: Environment info:
|
55 |
+
---------------------- ----------------------------------------------------------------------------------------------
|
56 |
+
sys.platform linux
|
57 |
+
Python 3.7.11 (default, Jul 27 2021, 14:32:16) [GCC 7.5.0]
|
58 |
+
numpy 1.20.3
|
59 |
+
PyTorch 1.7.1 @/bmrNAS/people/arjun/miniconda3/envs/meddlr_env/lib/python3.7/site-packages/torch
|
60 |
+
PyTorch debug build False
|
61 |
+
CUDA available True
|
62 |
+
GPU 0 GeForce RTX 2080 Ti
|
63 |
+
CUDA_HOME /usr/local/cuda
|
64 |
+
NVCC Cuda compilation tools, release 9.0, V9.0.176
|
65 |
+
Pillow 8.4.0
|
66 |
+
torchvision 0.8.2 @/bmrNAS/people/arjun/miniconda3/envs/meddlr_env/lib/python3.7/site-packages/torchvision
|
67 |
+
torchvision arch flags sm_35, sm_50, sm_60, sm_70, sm_75
|
68 |
+
SLURM_JOB_ID 29543
|
69 |
+
---------------------- ----------------------------------------------------------------------------------------------
|
70 |
+
PyTorch built with:
|
71 |
+
- GCC 7.3
|
72 |
+
- C++ Version: 201402
|
73 |
+
- Intel(R) oneAPI Math Kernel Library Version 2021.4-Product Build 20210904 for Intel(R) 64 architecture applications
|
74 |
+
- Intel(R) MKL-DNN v1.6.0 (Git Hash 5ef631a030a6f73131c77892041042805a06064f)
|
75 |
+
- OpenMP 201511 (a.k.a. OpenMP 4.5)
|
76 |
+
- NNPACK is enabled
|
77 |
+
- CPU capability usage: AVX2
|
78 |
+
- CUDA Runtime 10.2
|
79 |
+
- NVCC architecture flags: -gencode;arch=compute_37,code=sm_37;-gencode;arch=compute_50,code=sm_50;-gencode;arch=compute_60,code=sm_60;-gencode;arch=compute_61,code=sm_61;-gencode;arch=compute_70,code=sm_70;-gencode;arch=compute_75,code=sm_75;-gencode;arch=compute_37,code=compute_37
|
80 |
+
- CuDNN 7.6.5
|
81 |
+
- Magma 2.5.2
|
82 |
+
- Build settings: BLAS=MKL, BUILD_TYPE=Release, CXX_FLAGS= -Wno-deprecated -fvisibility-inlines-hidden -DUSE_PTHREADPOOL -fopenmp -DNDEBUG -DUSE_FBGEMM -DUSE_QNNPACK -DUSE_PYTORCH_QNNPACK -DUSE_XNNPACK -DUSE_VULKAN_WRAPPER -O2 -fPIC -Wno-narrowing -Wall -Wextra -Werror=return-type -Wno-missing-field-initializers -Wno-type-limits -Wno-array-bounds -Wno-unknown-pragmas -Wno-sign-compare -Wno-unused-parameter -Wno-unused-variable -Wno-unused-function -Wno-unused-result -Wno-unused-local-typedefs -Wno-strict-overflow -Wno-strict-aliasing -Wno-error=deprecated-declarations -Wno-stringop-overflow -Wno-psabi -Wno-error=pedantic -Wno-error=redundant-decls -Wno-error=old-style-cast -fdiagnostics-color=always -faligned-new -Wno-unused-but-set-variable -Wno-maybe-uninitialized -fno-math-errno -fno-trapping-math -Werror=format -Wno-stringop-overflow, PERF_WITH_AVX=1, PERF_WITH_AVX2=1, PERF_WITH_AVX512=1, USE_CUDA=ON, USE_EXCEPTION_PTR=1, USE_GFLAGS=OFF, USE_GLOG=OFF, USE_MKL=ON, USE_MKLDNN=ON, USE_MPI=OFF, USE_NCCL=ON, USE_NNPACK=ON, USE_OPENMP=ON,
|
83 |
+
|
84 |
+
[01/08 07:37:54] meddlr INFO: Command line arguments: Namespace(auto_version=False, config_file='../configs/tests/basic.yaml', debug=True, devices=None, eval_only=False, num_gpus=1, opts=['DATALOADER.NUM_WORKERS', '8', 'SOLVER.MAX_ITER', '1600', 'SOLVER.CHECKPOINT_PERIOD', '200', 'TEST.EVAL_PERIOD', '200'], reproducible=False, restart_iter=False, resume=False)
|
85 |
+
[01/08 07:37:54] meddlr INFO: Contents of args.config_file=../configs/tests/basic.yaml:
|
86 |
+
# Basic testing config
|
87 |
+
# Use this for any testing you may want to do in the future.
|
88 |
+
# The model will be trained for 60 iterations (not epochs)
|
89 |
+
# on the mridata.org 2019 knee dataset.
|
90 |
+
MODEL:
|
91 |
+
UNROLLED:
|
92 |
+
NUM_UNROLLED_STEPS: 8
|
93 |
+
NUM_RESBLOCKS: 2
|
94 |
+
NUM_FEATURES: 128
|
95 |
+
DROPOUT: 0.
|
96 |
+
DATASETS:
|
97 |
+
TRAIN: ("mridata_knee_2019_train",)
|
98 |
+
VAL: ("mridata_knee_2019_val",)
|
99 |
+
TEST: ("mridata_knee_2019_test",)
|
100 |
+
DATALOADER:
|
101 |
+
NUM_WORKERS: 0 # for debugging purposes
|
102 |
+
SOLVER:
|
103 |
+
TRAIN_BATCH_SIZE: 1
|
104 |
+
TEST_BATCH_SIZE: 2
|
105 |
+
CHECKPOINT_PERIOD: 20
|
106 |
+
MAX_ITER: 80
|
107 |
+
TEST:
|
108 |
+
EVAL_PERIOD: 40
|
109 |
+
VIS_PERIOD: 20
|
110 |
+
TIME_SCALE: "iter"
|
111 |
+
OUTPUT_DIR: "results://tests/basic"
|
112 |
+
VERSION: 1
|
113 |
+
[01/08 07:37:54] meddlr INFO: Running with full config:
|
114 |
+
AUG_TEST:
|
115 |
+
UNDERSAMPLE:
|
116 |
+
ACCELERATIONS: (6,)
|
117 |
+
AUG_TRAIN:
|
118 |
+
MOTION_P: 0.2
|
119 |
+
MRI_RECON:
|
120 |
+
AUG_SENSITIVITY_MAPS: True
|
121 |
+
SCHEDULER_P:
|
122 |
+
IGNORE: False
|
123 |
+
TRANSFORMS: ()
|
124 |
+
NOISE_P: 0.2
|
125 |
+
UNDERSAMPLE:
|
126 |
+
ACCELERATIONS: (6,)
|
127 |
+
CALIBRATION_SIZE: 20
|
128 |
+
CENTER_FRACTIONS: ()
|
129 |
+
MAX_ATTEMPTS: 30
|
130 |
+
NAME: PoissonDiskMaskFunc
|
131 |
+
USE_MOTION: False
|
132 |
+
USE_NOISE: False
|
133 |
+
CUDNN_BENCHMARK: False
|
134 |
+
DATALOADER:
|
135 |
+
ALT_SAMPLER:
|
136 |
+
PERIOD_SUPERVISED: 1
|
137 |
+
PERIOD_UNSUPERVISED: 1
|
138 |
+
DATA_KEYS: ()
|
139 |
+
DROP_LAST: True
|
140 |
+
FILTER:
|
141 |
+
BY: ()
|
142 |
+
GROUP_SAMPLER:
|
143 |
+
AS_BATCH_SAMPLER: False
|
144 |
+
BATCH_BY: ()
|
145 |
+
NUM_WORKERS: 8
|
146 |
+
PREFETCH_FACTOR: 2
|
147 |
+
SAMPLER_TRAIN:
|
148 |
+
SUBSAMPLE_TRAIN:
|
149 |
+
NUM_TOTAL: -1
|
150 |
+
NUM_TOTAL_BY_GROUP: ()
|
151 |
+
NUM_UNDERSAMPLED: 0
|
152 |
+
NUM_VAL: -1
|
153 |
+
NUM_VAL_BY_GROUP: ()
|
154 |
+
SEED: 1000
|
155 |
+
DATASETS:
|
156 |
+
TEST: ('mridata_knee_2019_test',)
|
157 |
+
TRAIN: ('mridata_knee_2019_train',)
|
158 |
+
VAL: ('mridata_knee_2019_val',)
|
159 |
+
DESCRIPTION:
|
160 |
+
BRIEF:
|
161 |
+
ENTITY_NAME: ss_recon
|
162 |
+
EXP_NAME:
|
163 |
+
PROJECT_NAME: ss_recon
|
164 |
+
TAGS: ()
|
165 |
+
MODEL:
|
166 |
+
A2R:
|
167 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
168 |
+
USE_SUPERVISED_CONSISTENCY: False
|
169 |
+
CONSISTENCY:
|
170 |
+
AUG:
|
171 |
+
MOTION:
|
172 |
+
RANGE: (0.2, 0.5)
|
173 |
+
SCHEDULER:
|
174 |
+
WARMUP_ITERS: 0
|
175 |
+
WARMUP_METHOD:
|
176 |
+
MRI_RECON:
|
177 |
+
AUG_SENSITIVITY_MAPS: True
|
178 |
+
SCHEDULER_P:
|
179 |
+
IGNORE: False
|
180 |
+
TRANSFORMS: ()
|
181 |
+
NOISE:
|
182 |
+
MASK:
|
183 |
+
RHO: 1.0
|
184 |
+
SCHEDULER:
|
185 |
+
WARMUP_ITERS: 0
|
186 |
+
WARMUP_METHOD:
|
187 |
+
STD_DEV: (1,)
|
188 |
+
LATENT_LOSS_NAME: mag_l1
|
189 |
+
LATENT_LOSS_WEIGHT: 0.1
|
190 |
+
LOSS_NAME: l1
|
191 |
+
LOSS_WEIGHT: 0.1
|
192 |
+
NUM_LATENT_LAYERS: 1
|
193 |
+
USE_CONSISTENCY: True
|
194 |
+
USE_LATENT: False
|
195 |
+
CS:
|
196 |
+
MAX_ITER: 200
|
197 |
+
REGULARIZATION: 0.005
|
198 |
+
DENOISING:
|
199 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
200 |
+
NOISE:
|
201 |
+
STD_DEV: (1,)
|
202 |
+
USE_FULLY_SAMPLED_TARGET: True
|
203 |
+
USE_FULLY_SAMPLED_TARGET_EVAL: None
|
204 |
+
DEVICE: cuda
|
205 |
+
M2R:
|
206 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
207 |
+
USE_SUPERVISED_CONSISTENCY: False
|
208 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
209 |
+
N2R:
|
210 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
211 |
+
USE_SUPERVISED_CONSISTENCY: False
|
212 |
+
NM2R:
|
213 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
214 |
+
USE_SUPERVISED_CONSISTENCY: False
|
215 |
+
NORMALIZER:
|
216 |
+
KEYWORDS: ()
|
217 |
+
NAME: TopMagnitudeNormalizer
|
218 |
+
RECON_LOSS:
|
219 |
+
NAME: l1
|
220 |
+
RENORMALIZE_DATA: True
|
221 |
+
SEG:
|
222 |
+
ACTIVATION: sigmoid
|
223 |
+
CLASSES: ()
|
224 |
+
INCLUDE_BACKGROUND: False
|
225 |
+
SSDU:
|
226 |
+
MASKER:
|
227 |
+
PARAMS:
|
228 |
+
|
229 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
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UNET:
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BLOCK_ORDER: ('conv', 'relu', 'conv', 'relu', 'batchnorm', 'dropout')
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CHANNELS: 32
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DROPOUT: 0.0
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IN_CHANNELS: 2
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NORMALIZE: False
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NUM_POOL_LAYERS: 4
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OUT_CHANNELS: 2
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UNROLLED:
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BLOCK_ARCHITECTURE: ResNet
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CONV_BLOCK:
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ACTIVATION: relu
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NORM: none
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NORM_AFFINE: False
|
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ORDER: ('norm', 'act', 'drop', 'conv')
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DROPOUT: 0.0
|
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FIX_STEP_SIZE: False
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KERNEL_SIZE: (3,)
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NUM_EMAPS: 1
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NUM_FEATURES: 128
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NUM_RESBLOCKS: 2
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NUM_UNROLLED_STEPS: 8
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PADDING:
|
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SHARE_WEIGHTS: False
|
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WEIGHTS:
|
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OUTPUT_DIR: /bmrNAS/people/arjun/results/meddlr/tests/basic
|
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SEED: -1
|
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SOLVER:
|
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BASE_LR: 0.0001
|
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BIAS_LR_FACTOR: 1.0
|
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CHECKPOINT_PERIOD: 200
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GAMMA: 0.1
|
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GRAD_ACCUM_ITERS: 1
|
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LR_SCHEDULER_NAME: WarmupMultiStepLR
|
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MAX_ITER: 1600
|
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MOMENTUM: 0.9
|
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OPTIMIZER: Adam
|
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STEPS: (30000,)
|
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TEST_BATCH_SIZE: 2
|
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TRAIN_BATCH_SIZE: 1
|
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WARMUP_FACTOR: 0.001
|
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WARMUP_ITERS: 1000
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WARMUP_METHOD: linear
|
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WEIGHT_DECAY: 0.0001
|
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WEIGHT_DECAY_BIAS: 0.0001
|
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WEIGHT_DECAY_NORM: 0.0
|
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TEST:
|
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EVAL_PERIOD: 200
|
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EXPECTED_RESULTS: []
|
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FLUSH_PERIOD: 0
|
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VAL_AS_TEST: True
|
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VAL_METRICS:
|
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RECON: ()
|
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TIME_SCALE: iter
|
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VERSION: 1
|
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VIS_PERIOD: 20
|
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[01/08 07:37:54] meddlr INFO: Full config saved to /bmrNAS/people/arjun/results/meddlr/tests/basic/config.yaml
|
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[01/08 07:37:54] mr.utils.env INFO: Using a generated random seed 55308770
|
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[01/08 07:37:54] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/train.json takes 0.04 seconds
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[01/08 07:37:54] mr.data.build INFO: Dropped 0 scans. 14 scans remaining
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[01/08 07:37:54] meddlr INFO: Calculated 4480 iterations per epoch
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[01/08 07:37:54] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/train.json takes 0.00 seconds
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[01/08 07:38:01] fvcore.common.checkpoint INFO: No checkpoint found. Initializing model from scratch
|
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[01/08 07:38:01] mr.engine.train_loop INFO: Starting training from iteration 0
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[01/08 07:38:13] mr.utils.events INFO: eta: 0:05:59 iter: 19 loss: 100222.734 total_loss: 100222.734 time: 0.2279 data_time: 0.2790 lr: 0.000002 max_mem: 2468M
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[01/08 07:38:18] mr.utils.events INFO: eta: 0:05:55 iter: 39 loss: 31516.157 total_loss: 31516.157 time: 0.2280 data_time: 0.0001 lr: 0.000004 max_mem: 2468M
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[01/08 07:38:23] mr.utils.events INFO: eta: 0:05:51 iter: 59 loss: 27504.994 total_loss: 27504.994 time: 0.2283 data_time: 0.0001 lr: 0.000006 max_mem: 2468M
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[01/08 07:38:28] mr.utils.events INFO: eta: 0:05:47 iter: 79 loss: 24592.978 total_loss: 24592.978 time: 0.2288 data_time: 0.0001 lr: 0.000008 max_mem: 2468M
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[01/08 07:38:34] mr.utils.events INFO: eta: 0:05:43 iter: 99 loss: 24272.967 total_loss: 24272.967 time: 0.2399 data_time: 0.0528 lr: 0.000010 max_mem: 2468M
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[01/08 07:38:39] mr.utils.events INFO: eta: 0:05:39 iter: 119 loss: 21447.893 total_loss: 21447.893 time: 0.2385 data_time: 0.0001 lr: 0.000012 max_mem: 2468M
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[01/08 07:38:44] mr.utils.events INFO: eta: 0:05:35 iter: 139 loss: 21284.981 total_loss: 21284.981 time: 0.2376 data_time: 0.0001 lr: 0.000014 max_mem: 2468M
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[01/08 07:38:49] mr.utils.events INFO: eta: 0:05:31 iter: 159 loss: 22184.024 total_loss: 22184.024 time: 0.2369 data_time: 0.0001 lr: 0.000016 max_mem: 2468M
|
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[01/08 07:38:55] mr.utils.events INFO: eta: 0:05:27 iter: 179 loss: 20008.485 total_loss: 20008.485 time: 0.2365 data_time: 0.0001 lr: 0.000018 max_mem: 2468M
|
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[01/08 07:39:00] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000199.pth
|
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[01/08 07:39:01] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.07 seconds
|
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[01/08 07:39:01] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
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[01/08 07:39:01] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
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|
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[01/08 07:39:53] mr.evaluation.evaluator INFO: Total inference time: 0:00:48.855011 (0.155095 s / batch on 1 devices)
|
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[01/08 07:39:53] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021862 s / batch on 1 devices)
|
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+
[01/08 07:40:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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[01/08 07:40:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:40:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
326 |
+
channel_0
|
327 |
+
--------------- --------------
|
328 |
+
val_nrmse 0.211 (0.055)
|
329 |
+
val_nrmse_mag 0.140 (0.033)
|
330 |
+
val_psnr 31.509 (2.961)
|
331 |
+
val_psnr_mag 35.018 (2.864)
|
332 |
+
val_ssim (Wang) 0.831 (0.090)
|
333 |
+
|
334 |
+
[01/08 07:40:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
335 |
+
channel_0
|
336 |
+
-------------------- --------------
|
337 |
+
val_nrmse_mag_scan 0.131 (0.007)
|
338 |
+
val_nrmse_scan 0.195 (0.012)
|
339 |
+
val_psnr_mag_scan 42.912 (0.363)
|
340 |
+
val_psnr_scan 39.450 (0.290)
|
341 |
+
val_ssim (Wang)_scan 0.957 (0.003)
|
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+
|
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+
[01/08 07:40:06] mr.evaluation.evaluator INFO: Evaluation Time: 13.612028 s
|
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+
[01/08 07:40:06] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
345 |
+
[01/08 07:40:06] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
346 |
+
[01/08 07:40:06] mr.evaluation.testing INFO: copypaste: 0.2112,0.1404,31.5090,35.0178,0.8314,0.1310,0.1952,42.9119,39.4501,0.9571
|
347 |
+
[01/08 07:40:06] mr.evaluation.testing INFO: Metrics (comma delimited):
|
348 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
349 |
+
0.2112,0.1404,31.5090,35.0178,0.8314,0.1310,0.1952,42.9119,39.4501,0.9571
|
350 |
+
[01/08 07:40:06] mr.utils.events INFO: eta: 0:13:01 iter: 199 loss: 18439.461 total_loss: 18439.461 time: 0.2363 data_time: 0.0001 lr: 0.000020 max_mem: 4234M
|
351 |
+
[01/08 07:40:12] mr.utils.events INFO: eta: 0:12:57 iter: 219 loss: 17119.530 total_loss: 17119.530 time: 0.2367 data_time: 0.0001 lr: 0.000022 max_mem: 4234M
|
352 |
+
[01/08 07:40:17] mr.utils.events INFO: eta: 0:12:53 iter: 239 loss: 16810.184 total_loss: 16810.184 time: 0.2394 data_time: 0.0279 lr: 0.000024 max_mem: 4234M
|
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+
[01/08 07:40:22] mr.utils.events INFO: eta: 0:12:49 iter: 259 loss: 15697.525 total_loss: 15697.525 time: 0.2395 data_time: 0.0001 lr: 0.000026 max_mem: 4234M
|
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+
[01/08 07:40:28] mr.utils.events INFO: eta: 0:12:45 iter: 279 loss: 16743.501 total_loss: 16743.501 time: 0.2393 data_time: 0.0001 lr: 0.000028 max_mem: 4234M
|
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+
[01/08 07:40:33] mr.utils.events INFO: eta: 0:12:40 iter: 299 loss: 18045.708 total_loss: 18045.708 time: 0.2392 data_time: 0.0013 lr: 0.000030 max_mem: 4234M
|
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+
[01/08 07:40:39] mr.utils.events INFO: eta: 0:12:36 iter: 319 loss: 16170.239 total_loss: 16170.239 time: 0.2392 data_time: 0.0001 lr: 0.000032 max_mem: 4234M
|
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[01/08 07:40:45] mr.utils.events INFO: eta: 0:12:32 iter: 339 loss: 16581.456 total_loss: 16581.456 time: 0.2412 data_time: 0.0363 lr: 0.000034 max_mem: 4234M
|
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[01/08 07:40:50] mr.utils.events INFO: eta: 0:12:28 iter: 359 loss: 17071.639 total_loss: 17071.639 time: 0.2411 data_time: 0.0001 lr: 0.000036 max_mem: 4234M
|
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+
[01/08 07:40:56] mr.utils.events INFO: eta: 0:12:25 iter: 379 loss: 16226.621 total_loss: 16226.621 time: 0.2411 data_time: 0.0001 lr: 0.000038 max_mem: 4234M
|
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+
[01/08 07:41:01] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000399.pth
|
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+
[01/08 07:41:02] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
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+
[01/08 07:41:02] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
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|
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[01/08 07:41:02] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
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[01/08 07:41:06] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0223 s / img. ETA=0:00:47
|
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|
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|
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+
[01/08 07:41:54] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.053359 (0.155725 s / batch on 1 devices)
|
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+
[01/08 07:41:54] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021976 s / batch on 1 devices)
|
377 |
+
[01/08 07:42:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:42:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
379 |
+
[01/08 07:42:07] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
380 |
+
channel_0
|
381 |
+
--------------- --------------
|
382 |
+
val_nrmse 0.176 (0.045)
|
383 |
+
val_nrmse_mag 0.122 (0.030)
|
384 |
+
val_psnr 33.094 (3.019)
|
385 |
+
val_psnr_mag 36.272 (3.018)
|
386 |
+
val_ssim (Wang) 0.860 (0.080)
|
387 |
+
|
388 |
+
[01/08 07:42:07] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
389 |
+
channel_0
|
390 |
+
-------------------- --------------
|
391 |
+
val_nrmse_mag_scan 0.113 (0.005)
|
392 |
+
val_nrmse_scan 0.163 (0.006)
|
393 |
+
val_psnr_mag_scan 44.208 (0.394)
|
394 |
+
val_psnr_scan 41.032 (0.507)
|
395 |
+
val_ssim (Wang)_scan 0.963 (0.002)
|
396 |
+
|
397 |
+
[01/08 07:42:07] mr.evaluation.evaluator INFO: Evaluation Time: 13.187915 s
|
398 |
+
[01/08 07:42:07] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
399 |
+
[01/08 07:42:07] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
400 |
+
[01/08 07:42:07] mr.evaluation.testing INFO: copypaste: 0.1758,0.1218,33.0937,36.2715,0.8602,0.1128,0.1626,44.2078,41.0316,0.9630
|
401 |
+
[01/08 07:42:07] mr.evaluation.testing INFO: Metrics (comma delimited):
|
402 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
403 |
+
0.1758,0.1218,33.0937,36.2715,0.8602,0.1128,0.1626,44.2078,41.0316,0.9630
|
404 |
+
[01/08 07:42:07] mr.utils.events INFO: eta: 0:11:15 iter: 399 loss: 14768.049 total_loss: 14768.049 time: 0.2410 data_time: 0.0001 lr: 0.000040 max_mem: 4235M
|
405 |
+
[01/08 07:42:13] mr.utils.events INFO: eta: 0:11:11 iter: 419 loss: 14830.163 total_loss: 14830.163 time: 0.2410 data_time: 0.0001 lr: 0.000042 max_mem: 4235M
|
406 |
+
[01/08 07:42:18] mr.utils.events INFO: eta: 0:11:06 iter: 439 loss: 16323.925 total_loss: 16323.925 time: 0.2410 data_time: 0.0001 lr: 0.000044 max_mem: 4235M
|
407 |
+
[01/08 07:42:23] mr.utils.events INFO: eta: 0:11:02 iter: 459 loss: 14716.628 total_loss: 14716.628 time: 0.2409 data_time: 0.0001 lr: 0.000046 max_mem: 4235M
|
408 |
+
[01/08 07:42:29] mr.utils.events INFO: eta: 0:10:57 iter: 479 loss: 15069.688 total_loss: 15069.688 time: 0.2409 data_time: 0.0001 lr: 0.000048 max_mem: 4235M
|
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+
[01/08 07:42:34] mr.utils.events INFO: eta: 0:10:53 iter: 499 loss: 14391.693 total_loss: 14391.693 time: 0.2409 data_time: 0.0001 lr: 0.000050 max_mem: 4235M
|
410 |
+
[01/08 07:42:39] mr.utils.events INFO: eta: 0:10:48 iter: 519 loss: 14284.784 total_loss: 14284.784 time: 0.2409 data_time: 0.0001 lr: 0.000052 max_mem: 4235M
|
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+
[01/08 07:42:45] mr.utils.events INFO: eta: 0:10:44 iter: 539 loss: 15812.837 total_loss: 15812.837 time: 0.2409 data_time: 0.0001 lr: 0.000054 max_mem: 4235M
|
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+
[01/08 07:42:51] mr.utils.events INFO: eta: 0:10:39 iter: 559 loss: 15930.277 total_loss: 15930.277 time: 0.2409 data_time: 0.0001 lr: 0.000056 max_mem: 4235M
|
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+
[01/08 07:43:02] mr.utils.events INFO: eta: 0:10:34 iter: 579 loss: 15495.331 total_loss: 15495.331 time: 0.2410 data_time: 0.0001 lr: 0.000058 max_mem: 4235M
|
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+
[01/08 07:43:07] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000599.pth
|
415 |
+
[01/08 07:43:08] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
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+
[01/08 07:43:08] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
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[01/08 07:43:08] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
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[01/08 07:44:00] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.342107 (0.156642 s / batch on 1 devices)
|
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[01/08 07:44:00] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.022043 s / batch on 1 devices)
|
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[01/08 07:44:09] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:44:09] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:44:13] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
434 |
+
channel_0
|
435 |
+
--------------- --------------
|
436 |
+
val_nrmse 0.217 (0.036)
|
437 |
+
val_nrmse_mag 0.169 (0.023)
|
438 |
+
val_psnr 31.138 (2.830)
|
439 |
+
val_psnr_mag 33.292 (2.814)
|
440 |
+
val_ssim (Wang) 0.867 (0.077)
|
441 |
+
|
442 |
+
[01/08 07:44:13] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
443 |
+
channel_0
|
444 |
+
-------------------- --------------
|
445 |
+
val_nrmse_mag_scan 0.162 (0.003)
|
446 |
+
val_nrmse_scan 0.207 (0.002)
|
447 |
+
val_psnr_mag_scan 41.054 (0.641)
|
448 |
+
val_psnr_scan 38.946 (0.736)
|
449 |
+
val_ssim (Wang)_scan 0.962 (0.000)
|
450 |
+
|
451 |
+
[01/08 07:44:13] mr.evaluation.evaluator INFO: Evaluation Time: 13.194743 s
|
452 |
+
[01/08 07:44:13] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
453 |
+
[01/08 07:44:13] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
454 |
+
[01/08 07:44:13] mr.evaluation.testing INFO: copypaste: 0.2174,0.1691,31.1379,33.2924,0.8669,0.1621,0.2066,41.0542,38.9462,0.9623
|
455 |
+
[01/08 07:44:13] mr.evaluation.testing INFO: Metrics (comma delimited):
|
456 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
457 |
+
0.2174,0.1691,31.1379,33.2924,0.8669,0.1621,0.2066,41.0542,38.9462,0.9623
|
458 |
+
[01/08 07:44:13] mr.utils.events INFO: eta: 0:09:24 iter: 599 loss: 13945.590 total_loss: 13945.590 time: 0.2409 data_time: 0.0001 lr: 0.000060 max_mem: 4237M
|
459 |
+
[01/08 07:44:18] mr.utils.events INFO: eta: 0:09:19 iter: 619 loss: 16922.678 total_loss: 16922.678 time: 0.2410 data_time: 0.0001 lr: 0.000062 max_mem: 4237M
|
460 |
+
[01/08 07:44:23] mr.utils.events INFO: eta: 0:09:15 iter: 639 loss: 14901.438 total_loss: 14901.438 time: 0.2410 data_time: 0.0001 lr: 0.000064 max_mem: 4237M
|
461 |
+
[01/08 07:44:28] mr.utils.events INFO: eta: 0:09:10 iter: 659 loss: 14073.586 total_loss: 14073.586 time: 0.2410 data_time: 0.0001 lr: 0.000066 max_mem: 4237M
|
462 |
+
[01/08 07:44:34] mr.utils.events INFO: eta: 0:09:06 iter: 679 loss: 16618.619 total_loss: 16618.619 time: 0.2410 data_time: 0.0001 lr: 0.000068 max_mem: 4237M
|
463 |
+
[01/08 07:44:39] mr.utils.events INFO: eta: 0:09:01 iter: 699 loss: 17848.932 total_loss: 17848.932 time: 0.2410 data_time: 0.0001 lr: 0.000070 max_mem: 4237M
|
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+
[01/08 07:44:44] mr.utils.events INFO: eta: 0:08:56 iter: 719 loss: 16070.655 total_loss: 16070.655 time: 0.2410 data_time: 0.0001 lr: 0.000072 max_mem: 4237M
|
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+
[01/08 07:44:49] mr.utils.events INFO: eta: 0:08:52 iter: 739 loss: 16163.839 total_loss: 16163.839 time: 0.2411 data_time: 0.0001 lr: 0.000074 max_mem: 4237M
|
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+
[01/08 07:44:54] mr.utils.events INFO: eta: 0:08:47 iter: 759 loss: 15517.578 total_loss: 15517.578 time: 0.2411 data_time: 0.0001 lr: 0.000076 max_mem: 4237M
|
467 |
+
[01/08 07:45:00] mr.utils.events INFO: eta: 0:08:42 iter: 779 loss: 15658.616 total_loss: 15658.616 time: 0.2411 data_time: 0.0001 lr: 0.000078 max_mem: 4237M
|
468 |
+
[01/08 07:45:05] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000799.pth
|
469 |
+
[01/08 07:45:05] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
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+
[01/08 07:45:05] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
|
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[01/08 07:45:05] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
|
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[01/08 07:45:05] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
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|
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|
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+
[01/08 07:45:57] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.500946 (0.157146 s / batch on 1 devices)
|
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+
[01/08 07:45:57] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.022107 s / batch on 1 devices)
|
485 |
+
[01/08 07:46:07] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:46:07] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
487 |
+
[01/08 07:46:10] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
488 |
+
channel_0
|
489 |
+
--------------- --------------
|
490 |
+
val_nrmse 0.175 (0.043)
|
491 |
+
val_nrmse_mag 0.120 (0.032)
|
492 |
+
val_psnr 33.099 (2.996)
|
493 |
+
val_psnr_mag 36.426 (3.111)
|
494 |
+
val_ssim (Wang) 0.866 (0.082)
|
495 |
+
|
496 |
+
[01/08 07:46:10] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
497 |
+
channel_0
|
498 |
+
-------------------- --------------
|
499 |
+
val_nrmse_mag_scan 0.111 (0.006)
|
500 |
+
val_nrmse_scan 0.163 (0.006)
|
501 |
+
val_psnr_mag_scan 44.388 (0.314)
|
502 |
+
val_psnr_scan 41.028 (0.479)
|
503 |
+
val_ssim (Wang)_scan 0.964 (0.002)
|
504 |
+
|
505 |
+
[01/08 07:46:10] mr.evaluation.evaluator INFO: Evaluation Time: 13.062179 s
|
506 |
+
[01/08 07:46:10] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
507 |
+
[01/08 07:46:10] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
508 |
+
[01/08 07:46:10] mr.evaluation.testing INFO: copypaste: 0.1754,0.1200,33.0992,36.4262,0.8660,0.1105,0.1627,44.3880,41.0275,0.9637
|
509 |
+
[01/08 07:46:10] mr.evaluation.testing INFO: Metrics (comma delimited):
|
510 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
511 |
+
0.1754,0.1200,33.0992,36.4262,0.8660,0.1105,0.1627,44.3880,41.0275,0.9637
|
512 |
+
[01/08 07:46:10] mr.utils.events INFO: eta: 0:07:32 iter: 799 loss: 15171.014 total_loss: 15171.014 time: 0.2411 data_time: 0.0001 lr: 0.000080 max_mem: 4238M
|
513 |
+
[01/08 07:46:16] mr.utils.events INFO: eta: 0:07:27 iter: 819 loss: 14583.270 total_loss: 14583.270 time: 0.2411 data_time: 0.0001 lr: 0.000082 max_mem: 4238M
|
514 |
+
[01/08 07:46:21] mr.utils.events INFO: eta: 0:07:23 iter: 839 loss: 14240.295 total_loss: 14240.295 time: 0.2411 data_time: 0.0001 lr: 0.000084 max_mem: 4238M
|
515 |
+
[01/08 07:46:26] mr.utils.events INFO: eta: 0:07:18 iter: 859 loss: 15098.030 total_loss: 15098.030 time: 0.2411 data_time: 0.0001 lr: 0.000086 max_mem: 4238M
|
516 |
+
[01/08 07:46:31] mr.utils.events INFO: eta: 0:07:13 iter: 879 loss: 15402.230 total_loss: 15402.230 time: 0.2412 data_time: 0.0001 lr: 0.000088 max_mem: 4238M
|
517 |
+
[01/08 07:46:36] mr.utils.events INFO: eta: 0:07:08 iter: 899 loss: 14225.305 total_loss: 14225.305 time: 0.2412 data_time: 0.0001 lr: 0.000090 max_mem: 4238M
|
518 |
+
[01/08 07:46:43] mr.utils.events INFO: eta: 0:07:04 iter: 919 loss: 13569.448 total_loss: 13569.448 time: 0.2412 data_time: 0.0001 lr: 0.000092 max_mem: 4238M
|
519 |
+
[01/08 07:46:48] mr.utils.events INFO: eta: 0:06:59 iter: 939 loss: 14107.779 total_loss: 14107.779 time: 0.2412 data_time: 0.0001 lr: 0.000094 max_mem: 4238M
|
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+
[01/08 07:46:53] mr.utils.events INFO: eta: 0:06:54 iter: 959 loss: 14675.758 total_loss: 14675.758 time: 0.2413 data_time: 0.0001 lr: 0.000096 max_mem: 4238M
|
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+
[01/08 07:46:58] mr.utils.events INFO: eta: 0:06:50 iter: 979 loss: 14544.494 total_loss: 14544.494 time: 0.2413 data_time: 0.0001 lr: 0.000098 max_mem: 4238M
|
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+
[01/08 07:47:03] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000999.pth
|
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+
[01/08 07:47:04] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
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+
[01/08 07:47:04] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
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[01/08 07:47:04] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
|
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+
[01/08 07:47:04] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
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+
[01/08 07:47:08] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0250 s / img. ETA=0:00:48
|
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[01/08 07:47:13] mr.evaluation.evaluator INFO: Inference done 43/320. 0.0227 s / img. ETA=0:00:43
|
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[01/08 07:47:18] mr.evaluation.evaluator INFO: Inference done 75/320. 0.0225 s / img. ETA=0:00:38
|
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[01/08 07:47:23] mr.evaluation.evaluator INFO: Inference done 107/320. 0.0225 s / img. ETA=0:00:33
|
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|
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[01/08 07:47:53] mr.evaluation.evaluator INFO: Inference done 299/320. 0.0223 s / img. ETA=0:00:03
|
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+
[01/08 07:47:56] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.544317 (0.157284 s / batch on 1 devices)
|
538 |
+
[01/08 07:47:56] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.022172 s / batch on 1 devices)
|
539 |
+
[01/08 07:48:06] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:48:06] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
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+
[01/08 07:48:09] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
542 |
+
channel_0
|
543 |
+
--------------- --------------
|
544 |
+
val_nrmse 0.175 (0.042)
|
545 |
+
val_nrmse_mag 0.138 (0.030)
|
546 |
+
val_psnr 33.089 (3.029)
|
547 |
+
val_psnr_mag 35.133 (2.998)
|
548 |
+
val_ssim (Wang) 0.810 (0.075)
|
549 |
+
|
550 |
+
[01/08 07:48:09] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
551 |
+
channel_0
|
552 |
+
-------------------- --------------
|
553 |
+
val_nrmse_mag_scan 0.129 (0.006)
|
554 |
+
val_nrmse_scan 0.163 (0.005)
|
555 |
+
val_psnr_mag_scan 43.045 (0.422)
|
556 |
+
val_psnr_scan 41.020 (0.545)
|
557 |
+
val_ssim (Wang)_scan 0.932 (0.011)
|
558 |
+
|
559 |
+
[01/08 07:48:09] mr.evaluation.evaluator INFO: Evaluation Time: 13.296574 s
|
560 |
+
[01/08 07:48:09] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
561 |
+
[01/08 07:48:09] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
562 |
+
[01/08 07:48:09] mr.evaluation.testing INFO: copypaste: 0.1755,0.1383,33.0890,35.1330,0.8102,0.1290,0.1628,43.0453,41.0200,0.9319
|
563 |
+
[01/08 07:48:09] mr.evaluation.testing INFO: Metrics (comma delimited):
|
564 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
565 |
+
0.1755,0.1383,33.0890,35.1330,0.8102,0.1290,0.1628,43.0453,41.0200,0.9319
|
566 |
+
[01/08 07:48:09] mr.utils.events INFO: eta: 0:05:40 iter: 999 loss: 14674.882 total_loss: 14674.882 time: 0.2413 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
567 |
+
[01/08 07:48:15] mr.utils.events INFO: eta: 0:05:35 iter: 1019 loss: 14348.898 total_loss: 14348.898 time: 0.2413 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
568 |
+
[01/08 07:48:20] mr.utils.events INFO: eta: 0:05:31 iter: 1039 loss: 14988.102 total_loss: 14988.102 time: 0.2413 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
569 |
+
[01/08 07:48:25] mr.utils.events INFO: eta: 0:05:26 iter: 1059 loss: 17364.371 total_loss: 17364.371 time: 0.2413 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
570 |
+
[01/08 07:48:30] mr.utils.events INFO: eta: 0:05:21 iter: 1079 loss: 14381.812 total_loss: 14381.812 time: 0.2413 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
571 |
+
[01/08 07:48:35] mr.utils.events INFO: eta: 0:05:16 iter: 1099 loss: 14260.652 total_loss: 14260.652 time: 0.2413 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
572 |
+
[01/08 07:48:41] mr.utils.events INFO: eta: 0:05:12 iter: 1119 loss: 14124.476 total_loss: 14124.476 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
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+
[01/08 07:48:46] mr.utils.events INFO: eta: 0:05:07 iter: 1139 loss: 13414.080 total_loss: 13414.080 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
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+
[01/08 07:48:51] mr.utils.events INFO: eta: 0:05:02 iter: 1159 loss: 14458.338 total_loss: 14458.338 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
575 |
+
[01/08 07:48:56] mr.utils.events INFO: eta: 0:04:57 iter: 1179 loss: 13799.362 total_loss: 13799.362 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4240M
|
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+
[01/08 07:49:01] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0001199.pth
|
577 |
+
[01/08 07:49:02] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
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+
[01/08 07:49:02] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
|
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+
[01/08 07:49:02] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
|
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[01/08 07:49:02] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
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[01/08 07:49:06] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0246 s / img. ETA=0:00:48
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[01/08 07:49:11] mr.evaluation.evaluator INFO: Inference done 43/320. 0.0227 s / img. ETA=0:00:43
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[01/08 07:49:16] mr.evaluation.evaluator INFO: Inference done 75/320. 0.0224 s / img. ETA=0:00:38
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[01/08 07:49:21] mr.evaluation.evaluator INFO: Inference done 107/320. 0.0224 s / img. ETA=0:00:33
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[01/08 07:49:26] mr.evaluation.evaluator INFO: Inference done 139/320. 0.0224 s / img. ETA=0:00:28
|
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+
[01/08 07:49:31] mr.evaluation.evaluator INFO: Inference done 171/320. 0.0223 s / img. ETA=0:00:23
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[01/08 07:49:36] mr.evaluation.evaluator INFO: Inference done 203/320. 0.0223 s / img. ETA=0:00:18
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[01/08 07:49:41] mr.evaluation.evaluator INFO: Inference done 235/320. 0.0223 s / img. ETA=0:00:13
|
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+
[01/08 07:49:46] mr.evaluation.evaluator INFO: Inference done 267/320. 0.0223 s / img. ETA=0:00:08
|
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+
[01/08 07:49:51] mr.evaluation.evaluator INFO: Inference done 299/320. 0.0223 s / img. ETA=0:00:03
|
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+
[01/08 07:49:54] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.547863 (0.157295 s / batch on 1 devices)
|
592 |
+
[01/08 07:49:54] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.022115 s / batch on 1 devices)
|
593 |
+
[01/08 07:50:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
594 |
+
[01/08 07:50:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
595 |
+
[01/08 07:50:08] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
596 |
+
channel_0
|
597 |
+
--------------- --------------
|
598 |
+
val_nrmse 0.182 (0.041)
|
599 |
+
val_nrmse_mag 0.135 (0.029)
|
600 |
+
val_psnr 32.762 (2.957)
|
601 |
+
val_psnr_mag 35.311 (2.952)
|
602 |
+
val_ssim (Wang) 0.863 (0.078)
|
603 |
+
|
604 |
+
[01/08 07:50:08] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
605 |
+
channel_0
|
606 |
+
-------------------- --------------
|
607 |
+
val_nrmse_mag_scan 0.127 (0.005)
|
608 |
+
val_nrmse_scan 0.170 (0.005)
|
609 |
+
val_psnr_mag_scan 43.202 (0.427)
|
610 |
+
val_psnr_scan 40.667 (0.561)
|
611 |
+
val_ssim (Wang)_scan 0.961 (0.005)
|
612 |
+
|
613 |
+
[01/08 07:50:08] mr.evaluation.evaluator INFO: Evaluation Time: 13.242378 s
|
614 |
+
[01/08 07:50:08] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
615 |
+
[01/08 07:50:08] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
616 |
+
[01/08 07:50:08] mr.evaluation.testing INFO: copypaste: 0.1817,0.1353,32.7618,35.3113,0.8626,0.1267,0.1695,43.2024,40.6668,0.9606
|
617 |
+
[01/08 07:50:08] mr.evaluation.testing INFO: Metrics (comma delimited):
|
618 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
619 |
+
0.1817,0.1353,32.7618,35.3113,0.8626,0.1267,0.1695,43.2024,40.6668,0.9606
|
620 |
+
[01/08 07:50:08] mr.utils.events INFO: eta: 0:03:48 iter: 1199 loss: 14033.812 total_loss: 14033.812 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
621 |
+
[01/08 07:50:13] mr.utils.events INFO: eta: 0:03:43 iter: 1219 loss: 15478.925 total_loss: 15478.925 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
622 |
+
[01/08 07:50:18] mr.utils.events INFO: eta: 0:03:38 iter: 1239 loss: 14415.258 total_loss: 14415.258 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
623 |
+
[01/08 07:50:23] mr.utils.events INFO: eta: 0:03:33 iter: 1259 loss: 14165.776 total_loss: 14165.776 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
624 |
+
[01/08 07:50:28] mr.utils.events INFO: eta: 0:03:28 iter: 1279 loss: 14173.212 total_loss: 14173.212 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
625 |
+
[01/08 07:50:34] mr.utils.events INFO: eta: 0:03:24 iter: 1299 loss: 13085.434 total_loss: 13085.434 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
626 |
+
[01/08 07:50:39] mr.utils.events INFO: eta: 0:03:19 iter: 1319 loss: 12723.986 total_loss: 12723.986 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
627 |
+
[01/08 07:50:45] mr.utils.events INFO: eta: 0:03:14 iter: 1339 loss: 15378.066 total_loss: 15378.066 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
628 |
+
[01/08 07:50:50] mr.utils.events INFO: eta: 0:03:09 iter: 1359 loss: 14171.920 total_loss: 14171.920 time: 0.2414 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
629 |
+
[01/08 07:50:55] mr.utils.events INFO: eta: 0:03:04 iter: 1379 loss: 14608.114 total_loss: 14608.114 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4241M
|
630 |
+
[01/08 07:51:00] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0001399.pth
|
631 |
+
[01/08 07:51:01] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
632 |
+
[01/08 07:51:01] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
|
633 |
+
[01/08 07:51:01] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
|
634 |
+
[01/08 07:51:01] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
635 |
+
[01/08 07:51:05] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0218 s / img. ETA=0:00:48
|
636 |
+
[01/08 07:51:10] mr.evaluation.evaluator INFO: Inference done 43/320. 0.0218 s / img. ETA=0:00:43
|
637 |
+
[01/08 07:51:15] mr.evaluation.evaluator INFO: Inference done 75/320. 0.0218 s / img. ETA=0:00:38
|
638 |
+
[01/08 07:51:20] mr.evaluation.evaluator INFO: Inference done 107/320. 0.0219 s / img. ETA=0:00:33
|
639 |
+
[01/08 07:51:25] mr.evaluation.evaluator INFO: Inference done 139/320. 0.0219 s / img. ETA=0:00:28
|
640 |
+
[01/08 07:51:30] mr.evaluation.evaluator INFO: Inference done 171/320. 0.0218 s / img. ETA=0:00:23
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+
[01/08 07:51:35] mr.evaluation.evaluator INFO: Inference done 203/320. 0.0218 s / img. ETA=0:00:18
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+
[01/08 07:51:40] mr.evaluation.evaluator INFO: Inference done 235/320. 0.0218 s / img. ETA=0:00:13
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+
[01/08 07:51:45] mr.evaluation.evaluator INFO: Inference done 267/320. 0.0218 s / img. ETA=0:00:08
|
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+
[01/08 07:51:50] mr.evaluation.evaluator INFO: Inference done 299/320. 0.0218 s / img. ETA=0:00:03
|
645 |
+
[01/08 07:51:53] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.483551 (0.157091 s / batch on 1 devices)
|
646 |
+
[01/08 07:51:53] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021677 s / batch on 1 devices)
|
647 |
+
[01/08 07:52:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
648 |
+
[01/08 07:52:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
649 |
+
[01/08 07:52:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
650 |
+
channel_0
|
651 |
+
--------------- --------------
|
652 |
+
val_nrmse 0.164 (0.045)
|
653 |
+
val_nrmse_mag 0.120 (0.034)
|
654 |
+
val_psnr 33.694 (3.086)
|
655 |
+
val_psnr_mag 36.480 (3.132)
|
656 |
+
val_ssim (Wang) 0.833 (0.078)
|
657 |
+
|
658 |
+
[01/08 07:52:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
659 |
+
channel_0
|
660 |
+
-------------------- --------------
|
661 |
+
val_nrmse_mag_scan 0.110 (0.008)
|
662 |
+
val_nrmse_scan 0.151 (0.006)
|
663 |
+
val_psnr_mag_scan 44.465 (0.208)
|
664 |
+
val_psnr_scan 41.657 (0.464)
|
665 |
+
val_ssim (Wang)_scan 0.944 (0.010)
|
666 |
+
|
667 |
+
[01/08 07:52:06] mr.evaluation.evaluator INFO: Evaluation Time: 13.212838 s
|
668 |
+
[01/08 07:52:06] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
669 |
+
[01/08 07:52:06] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
670 |
+
[01/08 07:52:06] mr.evaluation.testing INFO: copypaste: 0.1645,0.1196,33.6935,36.4799,0.8328,0.1096,0.1513,44.4653,41.6570,0.9443
|
671 |
+
[01/08 07:52:06] mr.evaluation.testing INFO: Metrics (comma delimited):
|
672 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
673 |
+
0.1645,0.1196,33.6935,36.4799,0.8328,0.1096,0.1513,44.4653,41.6570,0.9443
|
674 |
+
[01/08 07:52:06] mr.utils.events INFO: eta: 0:01:54 iter: 1399 loss: 14015.138 total_loss: 14015.138 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
675 |
+
[01/08 07:52:12] mr.utils.events INFO: eta: 0:01:49 iter: 1419 loss: 14504.874 total_loss: 14504.874 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
676 |
+
[01/08 07:52:17] mr.utils.events INFO: eta: 0:01:44 iter: 1439 loss: 14570.553 total_loss: 14570.553 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
677 |
+
[01/08 07:52:22] mr.utils.events INFO: eta: 0:01:39 iter: 1459 loss: 14148.630 total_loss: 14148.630 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
678 |
+
[01/08 07:52:27] mr.utils.events INFO: eta: 0:01:34 iter: 1479 loss: 14428.591 total_loss: 14428.591 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
679 |
+
[01/08 07:52:32] mr.utils.events INFO: eta: 0:01:30 iter: 1499 loss: 13502.969 total_loss: 13502.969 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
680 |
+
[01/08 07:52:38] mr.utils.events INFO: eta: 0:01:25 iter: 1519 loss: 16368.226 total_loss: 16368.226 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
681 |
+
[01/08 07:52:43] mr.utils.events INFO: eta: 0:01:20 iter: 1539 loss: 14534.019 total_loss: 14534.019 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
682 |
+
[01/08 07:52:48] mr.utils.events INFO: eta: 0:01:15 iter: 1559 loss: 14640.928 total_loss: 14640.928 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
683 |
+
[01/08 07:52:53] mr.utils.events INFO: eta: 0:01:10 iter: 1579 loss: 13991.085 total_loss: 13991.085 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4243M
|
684 |
+
[01/08 07:52:58] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0001599.pth
|
685 |
+
[01/08 07:52:59] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_final.pth
|
686 |
+
[01/08 07:52:59] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
|
687 |
+
[01/08 07:52:59] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
|
688 |
+
[01/08 07:52:59] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
|
689 |
+
[01/08 07:52:59] mr.evaluation.evaluator INFO: Start inference on 320 batches
|
690 |
+
[01/08 07:53:03] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0260 s / img. ETA=0:00:48
|
691 |
+
[01/08 07:53:08] mr.evaluation.evaluator INFO: Inference done 43/320. 0.0230 s / img. ETA=0:00:43
|
692 |
+
[01/08 07:53:13] mr.evaluation.evaluator INFO: Inference done 75/320. 0.0228 s / img. ETA=0:00:38
|
693 |
+
[01/08 07:53:18] mr.evaluation.evaluator INFO: Inference done 107/320. 0.0227 s / img. ETA=0:00:33
|
694 |
+
[01/08 07:53:23] mr.evaluation.evaluator INFO: Inference done 139/320. 0.0227 s / img. ETA=0:00:28
|
695 |
+
[01/08 07:53:28] mr.evaluation.evaluator INFO: Inference done 171/320. 0.0226 s / img. ETA=0:00:23
|
696 |
+
[01/08 07:53:33] mr.evaluation.evaluator INFO: Inference done 203/320. 0.0226 s / img. ETA=0:00:18
|
697 |
+
[01/08 07:53:38] mr.evaluation.evaluator INFO: Inference done 235/320. 0.0226 s / img. ETA=0:00:13
|
698 |
+
[01/08 07:53:43] mr.evaluation.evaluator INFO: Inference done 267/320. 0.0225 s / img. ETA=0:00:08
|
699 |
+
[01/08 07:53:48] mr.evaluation.evaluator INFO: Inference done 299/320. 0.0225 s / img. ETA=0:00:03
|
700 |
+
[01/08 07:53:52] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.495082 (0.157127 s / batch on 1 devices)
|
701 |
+
[01/08 07:53:52] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:07 (0.022384 s / batch on 1 devices)
|
702 |
+
[01/08 07:54:01] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
703 |
+
[01/08 07:54:01] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
|
704 |
+
[01/08 07:54:05] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
|
705 |
+
channel_0
|
706 |
+
--------------- --------------
|
707 |
+
val_nrmse 0.189 (0.041)
|
708 |
+
val_nrmse_mag 0.117 (0.032)
|
709 |
+
val_psnr 32.410 (2.903)
|
710 |
+
val_psnr_mag 36.686 (3.132)
|
711 |
+
val_ssim (Wang) 0.858 (0.081)
|
712 |
+
|
713 |
+
[01/08 07:54:05] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
|
714 |
+
channel_0
|
715 |
+
-------------------- --------------
|
716 |
+
val_nrmse_mag_scan 0.107 (0.005)
|
717 |
+
val_nrmse_scan 0.177 (0.004)
|
718 |
+
val_psnr_mag_scan 44.659 (0.393)
|
719 |
+
val_psnr_scan 40.292 (0.600)
|
720 |
+
val_ssim (Wang)_scan 0.959 (0.005)
|
721 |
+
|
722 |
+
[01/08 07:54:05] mr.evaluation.evaluator INFO: Evaluation Time: 13.055382 s
|
723 |
+
[01/08 07:54:05] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
|
724 |
+
[01/08 07:54:05] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
725 |
+
[01/08 07:54:05] mr.evaluation.testing INFO: copypaste: 0.1889,0.1167,32.4100,36.6860,0.8582,0.1071,0.1770,44.6590,40.2923,0.9595
|
726 |
+
[01/08 07:54:05] mr.evaluation.testing INFO: Metrics (comma delimited):
|
727 |
+
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
|
728 |
+
0.1889,0.1167,32.4100,36.6860,0.8582,0.1071,0.1770,44.6590,40.2923,0.9595
|
729 |
+
[01/08 07:54:05] mr.utils.events INFO: eta: 0:00:00 iter: 1599 loss: 13840.166 total_loss: 13840.166 time: 0.2415 data_time: 0.0001 lr: 0.000100 max_mem: 4245M
|
730 |
+
[01/08 07:54:05] mr.engine.hooks INFO: Overall training speed: 1597 iterations in 0:06:25 (0.2417 s / it)
|
731 |
+
[01/08 07:54:05] mr.engine.hooks INFO: Total training time: 0:15:56 (0:09:30 on hooks)
|
test-data/test-exps/basic-cpu-orig/metrics.json
ADDED
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test-data/test-exps/basic-cpu-orig/model_0001199.pth
ADDED
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1 |
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version https://git-lfs.github.com/spec/v1
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size 43108711
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test-data/test-exps/basic-cpu-orig/model_0001399.pth
ADDED
@@ -0,0 +1,3 @@
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1 |
+
version https://git-lfs.github.com/spec/v1
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size 43108711
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test-data/test-exps/basic-cpu-orig/model_0001599.pth
ADDED
@@ -0,0 +1,3 @@
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1 |
+
version https://git-lfs.github.com/spec/v1
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size 43108711
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test-data/test-exps/basic-cpu-orig/model_final.pth
ADDED
@@ -0,0 +1,3 @@
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|
|
|
|
|
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|
|
1 |
+
version https://git-lfs.github.com/spec/v1
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|
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size 43108711
|
test-data/test-exps/basic-cpu/config.yaml
ADDED
@@ -0,0 +1,190 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
|
|
|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
AUG_TEST:
|
2 |
+
UNDERSAMPLE:
|
3 |
+
ACCELERATIONS: &id001
|
4 |
+
- 6
|
5 |
+
AUG_TRAIN:
|
6 |
+
MOTION_P: 0.2
|
7 |
+
MRI_RECON:
|
8 |
+
AUG_SENSITIVITY_MAPS: true
|
9 |
+
SCHEDULER_P:
|
10 |
+
IGNORE: false
|
11 |
+
TRANSFORMS: []
|
12 |
+
NOISE_P: 0.2
|
13 |
+
UNDERSAMPLE:
|
14 |
+
ACCELERATIONS: *id001
|
15 |
+
CALIBRATION_SIZE: 20
|
16 |
+
CENTER_FRACTIONS: []
|
17 |
+
MAX_ATTEMPTS: 30
|
18 |
+
NAME: PoissonDiskMaskFunc
|
19 |
+
USE_MOTION: false
|
20 |
+
USE_NOISE: false
|
21 |
+
CUDNN_BENCHMARK: false
|
22 |
+
DATALOADER:
|
23 |
+
ALT_SAMPLER:
|
24 |
+
PERIOD_SUPERVISED: 1
|
25 |
+
PERIOD_UNSUPERVISED: 1
|
26 |
+
DATA_KEYS: []
|
27 |
+
DROP_LAST: true
|
28 |
+
FILTER:
|
29 |
+
BY: []
|
30 |
+
GROUP_SAMPLER:
|
31 |
+
AS_BATCH_SAMPLER: false
|
32 |
+
BATCH_BY: []
|
33 |
+
NUM_WORKERS: 8
|
34 |
+
PREFETCH_FACTOR: 2
|
35 |
+
SAMPLER_TRAIN: ''
|
36 |
+
SUBSAMPLE_TRAIN:
|
37 |
+
NUM_TOTAL: -1
|
38 |
+
NUM_TOTAL_BY_GROUP: []
|
39 |
+
NUM_UNDERSAMPLED: 0
|
40 |
+
NUM_VAL: -1
|
41 |
+
NUM_VAL_BY_GROUP: []
|
42 |
+
SEED: 1000
|
43 |
+
DATASETS:
|
44 |
+
TEST:
|
45 |
+
- mridata_knee_2019_test
|
46 |
+
TRAIN:
|
47 |
+
- mridata_knee_2019_train
|
48 |
+
VAL:
|
49 |
+
- mridata_knee_2019_val
|
50 |
+
DESCRIPTION:
|
51 |
+
BRIEF: ''
|
52 |
+
ENTITY_NAME: ss_recon
|
53 |
+
EXP_NAME: ''
|
54 |
+
PROJECT_NAME: ss_recon
|
55 |
+
TAGS: []
|
56 |
+
MODEL:
|
57 |
+
A2R:
|
58 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
59 |
+
USE_SUPERVISED_CONSISTENCY: false
|
60 |
+
CONSISTENCY:
|
61 |
+
AUG:
|
62 |
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MOTION:
|
63 |
+
RANGE:
|
64 |
+
- 0.2
|
65 |
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- 0.5
|
66 |
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SCHEDULER:
|
67 |
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WARMUP_ITERS: 0
|
68 |
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WARMUP_METHOD: ''
|
69 |
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MRI_RECON:
|
70 |
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AUG_SENSITIVITY_MAPS: true
|
71 |
+
SCHEDULER_P:
|
72 |
+
IGNORE: false
|
73 |
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TRANSFORMS: []
|
74 |
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NOISE:
|
75 |
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MASK:
|
76 |
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RHO: 1.0
|
77 |
+
SCHEDULER:
|
78 |
+
WARMUP_ITERS: 0
|
79 |
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WARMUP_METHOD: ''
|
80 |
+
STD_DEV: &id002
|
81 |
+
- 1
|
82 |
+
LATENT_LOSS_NAME: mag_l1
|
83 |
+
LATENT_LOSS_WEIGHT: 0.1
|
84 |
+
LOSS_NAME: l1
|
85 |
+
LOSS_WEIGHT: 0.1
|
86 |
+
NUM_LATENT_LAYERS: 1
|
87 |
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USE_CONSISTENCY: true
|
88 |
+
USE_LATENT: false
|
89 |
+
CS:
|
90 |
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MAX_ITER: 200
|
91 |
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REGULARIZATION: 0.005
|
92 |
+
DENOISING:
|
93 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
94 |
+
NOISE:
|
95 |
+
STD_DEV: *id002
|
96 |
+
USE_FULLY_SAMPLED_TARGET: true
|
97 |
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USE_FULLY_SAMPLED_TARGET_EVAL: null
|
98 |
+
DEVICE: cuda
|
99 |
+
M2R:
|
100 |
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META_ARCHITECTURE: GeneralizedUnrolledCNN
|
101 |
+
USE_SUPERVISED_CONSISTENCY: false
|
102 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
103 |
+
N2R:
|
104 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
105 |
+
USE_SUPERVISED_CONSISTENCY: false
|
106 |
+
NM2R:
|
107 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
108 |
+
USE_SUPERVISED_CONSISTENCY: false
|
109 |
+
NORMALIZER:
|
110 |
+
KEYWORDS: []
|
111 |
+
NAME: TopMagnitudeNormalizer
|
112 |
+
RECON_LOSS:
|
113 |
+
NAME: l1
|
114 |
+
RENORMALIZE_DATA: true
|
115 |
+
SEG:
|
116 |
+
ACTIVATION: sigmoid
|
117 |
+
CLASSES: []
|
118 |
+
INCLUDE_BACKGROUND: false
|
119 |
+
SSDU:
|
120 |
+
MASKER:
|
121 |
+
PARAMS: {}
|
122 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
123 |
+
UNET:
|
124 |
+
BLOCK_ORDER:
|
125 |
+
- conv
|
126 |
+
- relu
|
127 |
+
- conv
|
128 |
+
- relu
|
129 |
+
- batchnorm
|
130 |
+
- dropout
|
131 |
+
CHANNELS: 32
|
132 |
+
DROPOUT: 0.0
|
133 |
+
IN_CHANNELS: 2
|
134 |
+
NORMALIZE: false
|
135 |
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NUM_POOL_LAYERS: 4
|
136 |
+
OUT_CHANNELS: 2
|
137 |
+
UNROLLED:
|
138 |
+
BLOCK_ARCHITECTURE: ResNet
|
139 |
+
CONV_BLOCK:
|
140 |
+
ACTIVATION: relu
|
141 |
+
NORM: none
|
142 |
+
NORM_AFFINE: false
|
143 |
+
ORDER:
|
144 |
+
- norm
|
145 |
+
- act
|
146 |
+
- drop
|
147 |
+
- conv
|
148 |
+
DROPOUT: 0.0
|
149 |
+
FIX_STEP_SIZE: false
|
150 |
+
KERNEL_SIZE:
|
151 |
+
- 3
|
152 |
+
NUM_EMAPS: 1
|
153 |
+
NUM_FEATURES: 128
|
154 |
+
NUM_RESBLOCKS: 2
|
155 |
+
NUM_UNROLLED_STEPS: 8
|
156 |
+
PADDING: ''
|
157 |
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SHARE_WEIGHTS: false
|
158 |
+
WEIGHTS: ''
|
159 |
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OUTPUT_DIR: "results://meddlr/tests/basic-cpu"
|
160 |
+
SEED: -1
|
161 |
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SOLVER:
|
162 |
+
BASE_LR: 0.0001
|
163 |
+
BIAS_LR_FACTOR: 1.0
|
164 |
+
CHECKPOINT_PERIOD: 200
|
165 |
+
GAMMA: 0.1
|
166 |
+
GRAD_ACCUM_ITERS: 1
|
167 |
+
LR_SCHEDULER_NAME: WarmupMultiStepLR
|
168 |
+
MAX_ITER: 1600
|
169 |
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MOMENTUM: 0.9
|
170 |
+
OPTIMIZER: Adam
|
171 |
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STEPS:
|
172 |
+
- 30000
|
173 |
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TEST_BATCH_SIZE: 2
|
174 |
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TRAIN_BATCH_SIZE: 1
|
175 |
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WARMUP_FACTOR: 0.001
|
176 |
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WARMUP_ITERS: 1000
|
177 |
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WARMUP_METHOD: linear
|
178 |
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WEIGHT_DECAY: 0.0001
|
179 |
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WEIGHT_DECAY_BIAS: 0.0001
|
180 |
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WEIGHT_DECAY_NORM: 0.0
|
181 |
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TEST:
|
182 |
+
EVAL_PERIOD: 200
|
183 |
+
EXPECTED_RESULTS: []
|
184 |
+
FLUSH_PERIOD: 0
|
185 |
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VAL_AS_TEST: true
|
186 |
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VAL_METRICS:
|
187 |
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RECON: []
|
188 |
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TIME_SCALE: iter
|
189 |
+
VERSION: 1
|
190 |
+
VIS_PERIOD: 20
|
test-data/test-exps/basic-cpu/last_checkpoint
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
model_final.pth
|
test-data/test-exps/basic-cpu/metrics.json
ADDED
@@ -0,0 +1,80 @@
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{"data_time": 5.8724312111735344e-05, "eta_seconds": 359.7661029919982, "iteration": 19, "l1": 100222.734375, "l2": 105335.453125, "loss": 100222.734375, "lr": 1.9981e-06, "mag_l1": 45874.640625, "nrmse": 0.9498541057109833, "psnr": 17.65980339050293, "time": 0.2275560423731804, "total_loss": 100222.734375}
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{"data_time": 6.18775375187397e-05, "eta_seconds": 355.79611470457166, "iteration": 39, "l1": 31516.1572265625, "l2": 36795.162109375, "loss": 31516.1572265625, "lr": 3.9961e-06, "mag_l1": 19095.89453125, "nrmse": 0.35987813770771027, "psnr": 24.924463272094727, "time": 0.2281585254240781, "total_loss": 31516.1572265625}
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|
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|
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53 |
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{"data_time": 6.161979399621487e-05, "eta_seconds": 326.47347527882084, "iteration": 1059, "l1": 17364.37109375, "l2": 20799.6396484375, "loss": 17364.37109375, "lr": 0.0001, "mag_l1": 11414.58203125, "nrmse": 0.18761789798736572, "psnr": 31.90066146850586, "time": 0.24163383385166526, "total_loss": 17364.37109375}
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{"data_time": 6.794603541493416e-05, "eta_seconds": 321.7045300004538, "iteration": 1079, "l1": 14381.8115234375, "l2": 16754.91796875, "loss": 14381.8115234375, "lr": 0.0001, "mag_l1": 10022.2314453125, "nrmse": 0.17259720712900162, "psnr": 32.45737075805664, "time": 0.24146606703288853, "total_loss": 14381.8115234375}
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{"data_time": 6.646313704550266e-05, "eta_seconds": 316.9261127819773, "iteration": 1099, "l1": 14260.65185546875, "l2": 16611.7568359375, "loss": 14260.65185546875, "lr": 0.0001, "mag_l1": 9162.88037109375, "nrmse": 0.15355423092842102, "psnr": 32.858924865722656, "time": 0.24221350206062198, "total_loss": 14260.65185546875}
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{"data_time": 6.980751641094685e-05, "eta_seconds": 312.15706994733773, "iteration": 1119, "l1": 14124.47607421875, "l2": 16373.28759765625, "loss": 14124.47607421875, "lr": 0.0001, "mag_l1": 9208.14208984375, "nrmse": 0.1590411514043808, "psnr": 33.97137260437012, "time": 0.24161972617730498, "total_loss": 14124.47607421875}
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{"data_time": 6.412551738321781e-05, "eta_seconds": 307.36848895973526, "iteration": 1139, "l1": 13414.080078125, "l2": 15577.26513671875, "loss": 13414.080078125, "lr": 0.0001, "mag_l1": 9122.6162109375, "nrmse": 0.1631639003753662, "psnr": 32.320106506347656, "time": 0.24181801592931151, "total_loss": 13414.080078125}
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{"data_time": 5.296152085065842e-05, "eta_seconds": 302.5673929194454, "iteration": 1159, "l1": 14458.33837890625, "l2": 16905.0712890625, "loss": 14458.33837890625, "lr": 0.0001, "mag_l1": 9457.0810546875, "nrmse": 0.15660183131694794, "psnr": 32.847551345825195, "time": 0.24181626876816154, "total_loss": 14458.33837890625}
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{"data_time": 5.789846181869507e-05, "eta_seconds": 297.7640440831892, "iteration": 1179, "l1": 13799.36181640625, "l2": 16046.197265625, "loss": 13799.36181640625, "lr": 0.0001, "mag_l1": 8992.48388671875, "nrmse": 0.15394268929958344, "psnr": 33.42691421508789, "time": 0.2419192420784384, "total_loss": 13799.36181640625}
|
60 |
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{"data_time": 5.281809717416763e-05, "eta_seconds": 228.20380558352917, "eval_time": 65.78305590897799, "iteration": 1199, "l1": 14033.81201171875, "l2": 16493.9228515625, "loss": 14033.81201171875, "lr": 0.0001, "mag_l1": 9655.1611328125, "mridata_knee_2019_val/val_nrmse": 0.18173597753047943, "mridata_knee_2019_val/val_nrmse_mag": 0.1352604776620865, "mridata_knee_2019_val/val_nrmse_mag_scan": 0.12665021419525146, "mridata_knee_2019_val/val_nrmse_scan": 0.16953781247138977, "mridata_knee_2019_val/val_psnr": 32.761844635009766, "mridata_knee_2019_val/val_psnr_mag": 35.311279296875, "mridata_knee_2019_val/val_psnr_mag_scan": 43.202449798583984, "mridata_knee_2019_val/val_psnr_scan": 40.666847229003906, "mridata_knee_2019_val/val_ssim (Wang)": 0.8625695109367371, "mridata_knee_2019_val/val_ssim (Wang)_scan": 0.9606165885925293, "nrmse": 0.16332802176475525, "psnr": 33.947330474853516, "time": 0.24200542853213847, "total_loss": 14033.81201171875}
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{"data_time": 5.591195076704025e-05, "eta_seconds": 223.38669030740857, "iteration": 1219, "l1": 15478.92529296875, "l2": 18354.0029296875, "loss": 15478.92529296875, "lr": 0.0001, "mag_l1": 10046.9384765625, "nrmse": 0.1664258986711502, "psnr": 32.79239273071289, "time": 0.2412805170752108, "total_loss": 15478.92529296875}
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{"data_time": 5.942396819591522e-05, "eta_seconds": 218.57006236631423, "iteration": 1239, "l1": 14415.25830078125, "l2": 16793.048828125, "loss": 14415.25830078125, "lr": 0.0001, "mag_l1": 9219.0849609375, "nrmse": 0.15688494592905045, "psnr": 33.95304489135742, "time": 0.24145523342303932, "total_loss": 14415.25830078125}
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{"data_time": 6.720144301652908e-05, "eta_seconds": 213.75141527038068, "iteration": 1259, "l1": 14165.77587890625, "l2": 16886.115234375, "loss": 14165.77587890625, "lr": 0.0001, "mag_l1": 9268.1455078125, "nrmse": 0.14884252101182938, "psnr": 33.326005935668945, "time": 0.2413755594752729, "total_loss": 14165.77587890625}
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{"data_time": 5.9649115428328514e-05, "eta_seconds": 208.9349760042969, "iteration": 1279, "l1": 14173.21240234375, "l2": 16730.4501953125, "loss": 14173.21240234375, "lr": 0.0001, "mag_l1": 9147.1650390625, "nrmse": 0.14594492316246033, "psnr": 35.1673583984375, "time": 0.2417582841590047, "total_loss": 14173.21240234375}
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{"data_time": 5.298107862472534e-05, "eta_seconds": 204.11623431602493, "iteration": 1299, "l1": 13085.43359375, "l2": 15053.86474609375, "loss": 13085.43359375, "lr": 0.0001, "mag_l1": 8664.46337890625, "nrmse": 0.16419310122728348, "psnr": 32.35848426818848, "time": 0.24177921446971595, "total_loss": 13085.43359375}
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{"data_time": 5.486304871737957e-05, "eta_seconds": 199.29702514316887, "iteration": 1319, "l1": 12723.986328125, "l2": 14628.30517578125, "loss": 12723.986328125, "lr": 0.0001, "mag_l1": 8421.12646484375, "nrmse": 0.14692717045545578, "psnr": 33.99099349975586, "time": 0.24154443060979247, "total_loss": 12723.986328125}
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{"data_time": 6.129313260316849e-05, "eta_seconds": 194.47346941498108, "iteration": 1339, "l1": 15378.06591796875, "l2": 18187.669921875, "loss": 15378.06591796875, "lr": 0.0001, "mag_l1": 9888.9521484375, "nrmse": 0.1872420758008957, "psnr": 32.32719421386719, "time": 0.24176223343238235, "total_loss": 15378.06591796875}
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{"data_time": 6.481958553195e-05, "eta_seconds": 189.64989149640314, "iteration": 1359, "l1": 14171.919921875, "l2": 16596.2197265625, "loss": 14171.919921875, "lr": 0.0001, "mag_l1": 9225.52783203125, "nrmse": 0.15043732523918152, "psnr": 33.77565574645996, "time": 0.24172992445528507, "total_loss": 14171.919921875}
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{"data_time": 6.266427226364613e-05, "eta_seconds": 184.82441097451374, "iteration": 1379, "l1": 14608.1142578125, "l2": 17209.912109375, "loss": 14608.1142578125, "lr": 0.0001, "mag_l1": 9494.59619140625, "nrmse": 0.1493740975856781, "psnr": 33.855735778808594, "time": 0.24200989259406924, "total_loss": 14608.1142578125}
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{"data_time": 6.442610174417496e-05, "eta_seconds": 114.19009395944886, "eval_time": 65.50695857033134, "iteration": 1399, "l1": 14015.1376953125, "l2": 16584.1767578125, "loss": 14015.1376953125, "lr": 0.0001, "mag_l1": 9409.0576171875, "mridata_knee_2019_val/val_nrmse": 0.1644728183746338, "mridata_knee_2019_val/val_nrmse_mag": 0.11962752044200897, "mridata_knee_2019_val/val_nrmse_mag_scan": 0.10959033668041229, "mridata_knee_2019_val/val_nrmse_scan": 0.15130001306533813, "mridata_knee_2019_val/val_psnr": 33.69352722167969, "mridata_knee_2019_val/val_psnr_mag": 36.47991180419922, "mridata_knee_2019_val/val_psnr_mag_scan": 44.46525192260742, "mridata_knee_2019_val/val_psnr_scan": 41.65702438354492, "mridata_knee_2019_val/val_ssim (Wang)": 0.8328330516815186, "mridata_knee_2019_val/val_ssim (Wang)_scan": 0.9443427920341492, "nrmse": 0.15654479712247849, "psnr": 33.70793914794922, "time": 0.2420408132020384, "total_loss": 14015.1376953125}
|
71 |
+
{"data_time": 6.348639726638794e-05, "eta_seconds": 109.35973707190715, "iteration": 1419, "l1": 14504.8740234375, "l2": 16892.572265625, "loss": 14504.8740234375, "lr": 0.0001, "mag_l1": 9062.95947265625, "nrmse": 0.158022902905941, "psnr": 33.28822135925293, "time": 0.241186557803303, "total_loss": 14504.8740234375}
|
72 |
+
{"data_time": 6.20309729129076e-05, "eta_seconds": 104.52975297998637, "iteration": 1439, "l1": 14570.55322265625, "l2": 16938.021484375, "loss": 14570.55322265625, "lr": 0.0001, "mag_l1": 9079.298828125, "nrmse": 0.15439824014902115, "psnr": 34.190120697021484, "time": 0.24121813056990504, "total_loss": 14570.55322265625}
|
73 |
+
{"data_time": 5.4096104577183723e-05, "eta_seconds": 99.70246424828656, "iteration": 1459, "l1": 14148.6298828125, "l2": 16456.64013671875, "loss": 14148.6298828125, "lr": 0.0001, "mag_l1": 9206.6796875, "nrmse": 0.15177085995674133, "psnr": 32.96951675415039, "time": 0.24162484845146537, "total_loss": 14148.6298828125}
|
74 |
+
{"data_time": 5.659833550453186e-05, "eta_seconds": 94.87435412872583, "iteration": 1479, "l1": 14428.59130859375, "l2": 16905.7626953125, "loss": 14428.59130859375, "lr": 0.0001, "mag_l1": 9294.62451171875, "nrmse": 0.1514386609196663, "psnr": 33.57109832763672, "time": 0.24139102082699537, "total_loss": 14428.59130859375}
|
75 |
+
{"data_time": 6.248452700674534e-05, "eta_seconds": 90.04354841634631, "iteration": 1499, "l1": 13502.96875, "l2": 15441.13330078125, "loss": 13502.96875, "lr": 0.0001, "mag_l1": 8899.90380859375, "nrmse": 0.15698648244142532, "psnr": 33.806413650512695, "time": 0.2414140475448221, "total_loss": 13502.96875}
|
76 |
+
{"data_time": 6.328010931611061e-05, "eta_seconds": 85.21348409936763, "iteration": 1519, "l1": 16368.22607421875, "l2": 19601.62109375, "loss": 16368.22607421875, "lr": 0.0001, "mag_l1": 11740.41748046875, "nrmse": 0.1850760206580162, "psnr": 31.325047492980957, "time": 0.24184500519186258, "total_loss": 16368.22607421875}
|
77 |
+
{"data_time": 5.776155740022659e-05, "eta_seconds": 80.38282867753878, "iteration": 1539, "l1": 14534.01904296875, "l2": 17129.625, "loss": 14534.01904296875, "lr": 0.0001, "mag_l1": 9170.3642578125, "nrmse": 0.1565786600112915, "psnr": 33.045658111572266, "time": 0.24163913005031645, "total_loss": 14534.01904296875}
|
78 |
+
{"data_time": 5.075358785688877e-05, "eta_seconds": 75.55146820121445, "iteration": 1559, "l1": 14640.92822265625, "l2": 17371.580078125, "loss": 14640.92822265625, "lr": 0.0001, "mag_l1": 9371.52734375, "nrmse": 0.15031981468200684, "psnr": 33.405982971191406, "time": 0.24189145979471505, "total_loss": 14640.92822265625}
|
79 |
+
{"data_time": 5.542556755244732e-05, "eta_seconds": 70.71965304901823, "iteration": 1579, "l1": 13991.0849609375, "l2": 16249.23291015625, "loss": 13991.0849609375, "lr": 0.0001, "mag_l1": 9093.2080078125, "nrmse": 0.16681111603975296, "psnr": 33.96403503417969, "time": 0.2420606310479343, "total_loss": 13991.0849609375}
|
80 |
+
{"data_time": 5.887309089303017e-05, "eta_seconds": 0.24168377043679357, "eval_time": 65.34714458091184, "iteration": 1599, "l1": 13840.16552734375, "l2": 16009.8115234375, "loss": 13840.16552734375, "lr": 0.0001, "mag_l1": 9263.2841796875, "mridata_knee_2019_val/val_nrmse": 0.18894533812999725, "mridata_knee_2019_val/val_nrmse_mag": 0.1166970506310463, "mridata_knee_2019_val/val_nrmse_mag_scan": 0.10710737854242325, "mridata_knee_2019_val/val_nrmse_scan": 0.17699891328811646, "mridata_knee_2019_val/val_psnr": 32.40996551513672, "mridata_knee_2019_val/val_psnr_mag": 36.686038970947266, "mridata_knee_2019_val/val_psnr_mag_scan": 44.65895080566406, "mridata_knee_2019_val/val_psnr_scan": 40.29226303100586, "mridata_knee_2019_val/val_ssim (Wang)": 0.8581580519676208, "mridata_knee_2019_val/val_ssim (Wang)_scan": 0.959481418132782, "nrmse": 0.16567719727754593, "psnr": 33.099552154541016, "time": 0.24213037663139403, "total_loss": 13840.16552734375}
|
test-data/test-exps/basic-cpu/model_0000399.pth
ADDED
File without changes
|
test-data/test-exps/basic-cpu/model_0000799.pth
ADDED
File without changes
|
test-data/test-exps/basic-cpu/model_0001399.pth
ADDED
File without changes
|
test-data/test-exps/basic-cpu/model_final.pth
ADDED
File without changes
|
test-data/test-model/config-with-deps.yaml
ADDED
@@ -0,0 +1,188 @@
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|
1 |
+
# Test file for testing that dependencies get parsed
|
2 |
+
# DEPENDENCY: numpy<=0.0.1
|
3 |
+
AUG_TEST:
|
4 |
+
UNDERSAMPLE:
|
5 |
+
ACCELERATIONS:
|
6 |
+
- 6
|
7 |
+
AUG_TRAIN:
|
8 |
+
MOTION_P: 0.2
|
9 |
+
MRI_RECON:
|
10 |
+
AUG_SENSITIVITY_MAPS: true
|
11 |
+
SCHEDULER_P:
|
12 |
+
IGNORE: false
|
13 |
+
TRANSFORMS: []
|
14 |
+
NOISE_P: 0.2
|
15 |
+
UNDERSAMPLE:
|
16 |
+
ACCELERATIONS:
|
17 |
+
- 6
|
18 |
+
CALIBRATION_SIZE: 20
|
19 |
+
CENTER_FRACTIONS: []
|
20 |
+
MAX_ATTEMPTS: 30
|
21 |
+
NAME: PoissonDiskMaskFunc
|
22 |
+
USE_MOTION: false
|
23 |
+
USE_NOISE: false
|
24 |
+
CUDNN_BENCHMARK: false
|
25 |
+
DATALOADER:
|
26 |
+
ALT_SAMPLER:
|
27 |
+
PERIOD_SUPERVISED: 1
|
28 |
+
PERIOD_UNSUPERVISED: 1
|
29 |
+
DATA_KEYS: []
|
30 |
+
DROP_LAST: true
|
31 |
+
FILTER:
|
32 |
+
BY: []
|
33 |
+
GROUP_SAMPLER:
|
34 |
+
AS_BATCH_SAMPLER: false
|
35 |
+
BATCH_BY: []
|
36 |
+
NUM_WORKERS: 0
|
37 |
+
PREFETCH_FACTOR: 2
|
38 |
+
SAMPLER_TRAIN: ''
|
39 |
+
SUBSAMPLE_TRAIN:
|
40 |
+
NUM_TOTAL: -1
|
41 |
+
NUM_TOTAL_BY_GROUP: []
|
42 |
+
NUM_UNDERSAMPLED: 0
|
43 |
+
NUM_VAL: -1
|
44 |
+
NUM_VAL_BY_GROUP: []
|
45 |
+
SEED: 1000
|
46 |
+
DATASETS:
|
47 |
+
TEST:
|
48 |
+
- mridata_knee_2019_test
|
49 |
+
TRAIN:
|
50 |
+
- mridata_knee_2019_train
|
51 |
+
VAL:
|
52 |
+
- mridata_knee_2019_val
|
53 |
+
MODEL:
|
54 |
+
A2R:
|
55 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
56 |
+
USE_SUPERVISED_CONSISTENCY: false
|
57 |
+
CONSISTENCY:
|
58 |
+
AUG:
|
59 |
+
MOTION:
|
60 |
+
RANGE:
|
61 |
+
- 0.2
|
62 |
+
- 0.5
|
63 |
+
SCHEDULER:
|
64 |
+
WARMUP_ITERS: 0
|
65 |
+
WARMUP_METHOD: ''
|
66 |
+
MRI_RECON:
|
67 |
+
AUG_SENSITIVITY_MAPS: true
|
68 |
+
SCHEDULER_P:
|
69 |
+
IGNORE: false
|
70 |
+
TRANSFORMS: []
|
71 |
+
NOISE:
|
72 |
+
MASK:
|
73 |
+
RHO: 1.0
|
74 |
+
SCHEDULER:
|
75 |
+
WARMUP_ITERS: 0
|
76 |
+
WARMUP_METHOD: ''
|
77 |
+
STD_DEV:
|
78 |
+
- 1
|
79 |
+
LATENT_LOSS_NAME: mag_l1
|
80 |
+
LATENT_LOSS_WEIGHT: 0.1
|
81 |
+
LOSS_NAME: l1
|
82 |
+
LOSS_WEIGHT: 0.1
|
83 |
+
NUM_LATENT_LAYERS: 1
|
84 |
+
USE_CONSISTENCY: true
|
85 |
+
USE_LATENT: false
|
86 |
+
CS:
|
87 |
+
MAX_ITER: 200
|
88 |
+
REGULARIZATION: 0.005
|
89 |
+
DENOISING:
|
90 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
91 |
+
NOISE:
|
92 |
+
STD_DEV:
|
93 |
+
- 1
|
94 |
+
USE_FULLY_SAMPLED_TARGET: true
|
95 |
+
USE_FULLY_SAMPLED_TARGET_EVAL: null
|
96 |
+
DEVICE: cuda
|
97 |
+
M2R:
|
98 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
99 |
+
USE_SUPERVISED_CONSISTENCY: false
|
100 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
101 |
+
N2R:
|
102 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
103 |
+
USE_SUPERVISED_CONSISTENCY: false
|
104 |
+
NM2R:
|
105 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
106 |
+
USE_SUPERVISED_CONSISTENCY: false
|
107 |
+
NORMALIZER:
|
108 |
+
KEYWORDS: []
|
109 |
+
NAME: TopMagnitudeNormalizer
|
110 |
+
RECON_LOSS:
|
111 |
+
NAME: l1
|
112 |
+
RENORMALIZE_DATA: true
|
113 |
+
SEG:
|
114 |
+
ACTIVATION: sigmoid
|
115 |
+
CLASSES: []
|
116 |
+
INCLUDE_BACKGROUND: false
|
117 |
+
SSDU:
|
118 |
+
MASKER:
|
119 |
+
PARAMS: {}
|
120 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
121 |
+
UNET:
|
122 |
+
BLOCK_ORDER:
|
123 |
+
- conv
|
124 |
+
- relu
|
125 |
+
- conv
|
126 |
+
- relu
|
127 |
+
- batchnorm
|
128 |
+
- dropout
|
129 |
+
CHANNELS: 32
|
130 |
+
DROPOUT: 0.0
|
131 |
+
IN_CHANNELS: 2
|
132 |
+
NORMALIZE: false
|
133 |
+
NUM_POOL_LAYERS: 4
|
134 |
+
OUT_CHANNELS: 2
|
135 |
+
UNROLLED:
|
136 |
+
BLOCK_ARCHITECTURE: ResNet
|
137 |
+
CONV_BLOCK:
|
138 |
+
ACTIVATION: relu
|
139 |
+
NORM: none
|
140 |
+
NORM_AFFINE: false
|
141 |
+
ORDER:
|
142 |
+
- norm
|
143 |
+
- act
|
144 |
+
- drop
|
145 |
+
- conv
|
146 |
+
DROPOUT: 0.0
|
147 |
+
FIX_STEP_SIZE: false
|
148 |
+
KERNEL_SIZE:
|
149 |
+
- 3
|
150 |
+
NUM_EMAPS: 1
|
151 |
+
NUM_FEATURES: 128
|
152 |
+
NUM_RESBLOCKS: 2
|
153 |
+
NUM_UNROLLED_STEPS: 8
|
154 |
+
PADDING: ''
|
155 |
+
SHARE_WEIGHTS: false
|
156 |
+
WEIGHTS: ''
|
157 |
+
OUTPUT_DIR: "results://meddlr/tests/basic"
|
158 |
+
SEED: -1
|
159 |
+
SOLVER:
|
160 |
+
BASE_LR: 0.0001
|
161 |
+
BIAS_LR_FACTOR: 1.0
|
162 |
+
CHECKPOINT_PERIOD: 20
|
163 |
+
GAMMA: 0.1
|
164 |
+
GRAD_ACCUM_ITERS: 1
|
165 |
+
LR_SCHEDULER_NAME: WarmupMultiStepLR
|
166 |
+
MAX_ITER: 80
|
167 |
+
MOMENTUM: 0.9
|
168 |
+
OPTIMIZER: Adam
|
169 |
+
STEPS:
|
170 |
+
- 30000
|
171 |
+
TEST_BATCH_SIZE: 2
|
172 |
+
TRAIN_BATCH_SIZE: 1
|
173 |
+
WARMUP_FACTOR: 0.001
|
174 |
+
WARMUP_ITERS: 1000
|
175 |
+
WARMUP_METHOD: linear
|
176 |
+
WEIGHT_DECAY: 0.0001
|
177 |
+
WEIGHT_DECAY_BIAS: 0.0001
|
178 |
+
WEIGHT_DECAY_NORM: 0.0
|
179 |
+
TEST:
|
180 |
+
EVAL_PERIOD: 40
|
181 |
+
EXPECTED_RESULTS: []
|
182 |
+
FLUSH_PERIOD: 0
|
183 |
+
VAL_AS_TEST: true
|
184 |
+
VAL_METRICS:
|
185 |
+
RECON: []
|
186 |
+
TIME_SCALE: iter
|
187 |
+
VERSION: 1
|
188 |
+
VIS_PERIOD: 20
|
test-data/test-model/config.yaml
ADDED
@@ -0,0 +1,186 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
AUG_TEST:
|
2 |
+
UNDERSAMPLE:
|
3 |
+
ACCELERATIONS:
|
4 |
+
- 6
|
5 |
+
AUG_TRAIN:
|
6 |
+
MOTION_P: 0.2
|
7 |
+
MRI_RECON:
|
8 |
+
AUG_SENSITIVITY_MAPS: true
|
9 |
+
SCHEDULER_P:
|
10 |
+
IGNORE: false
|
11 |
+
TRANSFORMS: []
|
12 |
+
NOISE_P: 0.2
|
13 |
+
UNDERSAMPLE:
|
14 |
+
ACCELERATIONS:
|
15 |
+
- 6
|
16 |
+
CALIBRATION_SIZE: 20
|
17 |
+
CENTER_FRACTIONS: []
|
18 |
+
MAX_ATTEMPTS: 30
|
19 |
+
NAME: PoissonDiskMaskFunc
|
20 |
+
USE_MOTION: false
|
21 |
+
USE_NOISE: false
|
22 |
+
CUDNN_BENCHMARK: false
|
23 |
+
DATALOADER:
|
24 |
+
ALT_SAMPLER:
|
25 |
+
PERIOD_SUPERVISED: 1
|
26 |
+
PERIOD_UNSUPERVISED: 1
|
27 |
+
DATA_KEYS: []
|
28 |
+
DROP_LAST: true
|
29 |
+
FILTER:
|
30 |
+
BY: []
|
31 |
+
GROUP_SAMPLER:
|
32 |
+
AS_BATCH_SAMPLER: false
|
33 |
+
BATCH_BY: []
|
34 |
+
NUM_WORKERS: 0
|
35 |
+
PREFETCH_FACTOR: 2
|
36 |
+
SAMPLER_TRAIN: ''
|
37 |
+
SUBSAMPLE_TRAIN:
|
38 |
+
NUM_TOTAL: -1
|
39 |
+
NUM_TOTAL_BY_GROUP: []
|
40 |
+
NUM_UNDERSAMPLED: 0
|
41 |
+
NUM_VAL: -1
|
42 |
+
NUM_VAL_BY_GROUP: []
|
43 |
+
SEED: 1000
|
44 |
+
DATASETS:
|
45 |
+
TEST:
|
46 |
+
- mridata_knee_2019_test
|
47 |
+
TRAIN:
|
48 |
+
- mridata_knee_2019_train
|
49 |
+
VAL:
|
50 |
+
- mridata_knee_2019_val
|
51 |
+
MODEL:
|
52 |
+
A2R:
|
53 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
54 |
+
USE_SUPERVISED_CONSISTENCY: false
|
55 |
+
CONSISTENCY:
|
56 |
+
AUG:
|
57 |
+
MOTION:
|
58 |
+
RANGE:
|
59 |
+
- 0.2
|
60 |
+
- 0.5
|
61 |
+
SCHEDULER:
|
62 |
+
WARMUP_ITERS: 0
|
63 |
+
WARMUP_METHOD: ''
|
64 |
+
MRI_RECON:
|
65 |
+
AUG_SENSITIVITY_MAPS: true
|
66 |
+
SCHEDULER_P:
|
67 |
+
IGNORE: false
|
68 |
+
TRANSFORMS: []
|
69 |
+
NOISE:
|
70 |
+
MASK:
|
71 |
+
RHO: 1.0
|
72 |
+
SCHEDULER:
|
73 |
+
WARMUP_ITERS: 0
|
74 |
+
WARMUP_METHOD: ''
|
75 |
+
STD_DEV:
|
76 |
+
- 1
|
77 |
+
LATENT_LOSS_NAME: mag_l1
|
78 |
+
LATENT_LOSS_WEIGHT: 0.1
|
79 |
+
LOSS_NAME: l1
|
80 |
+
LOSS_WEIGHT: 0.1
|
81 |
+
NUM_LATENT_LAYERS: 1
|
82 |
+
USE_CONSISTENCY: true
|
83 |
+
USE_LATENT: false
|
84 |
+
CS:
|
85 |
+
MAX_ITER: 200
|
86 |
+
REGULARIZATION: 0.005
|
87 |
+
DENOISING:
|
88 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
89 |
+
NOISE:
|
90 |
+
STD_DEV:
|
91 |
+
- 1
|
92 |
+
USE_FULLY_SAMPLED_TARGET: true
|
93 |
+
USE_FULLY_SAMPLED_TARGET_EVAL: null
|
94 |
+
DEVICE: cuda
|
95 |
+
M2R:
|
96 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
97 |
+
USE_SUPERVISED_CONSISTENCY: false
|
98 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
99 |
+
N2R:
|
100 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
101 |
+
USE_SUPERVISED_CONSISTENCY: false
|
102 |
+
NM2R:
|
103 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
104 |
+
USE_SUPERVISED_CONSISTENCY: false
|
105 |
+
NORMALIZER:
|
106 |
+
KEYWORDS: []
|
107 |
+
NAME: TopMagnitudeNormalizer
|
108 |
+
RECON_LOSS:
|
109 |
+
NAME: l1
|
110 |
+
RENORMALIZE_DATA: true
|
111 |
+
SEG:
|
112 |
+
ACTIVATION: sigmoid
|
113 |
+
CLASSES: []
|
114 |
+
INCLUDE_BACKGROUND: false
|
115 |
+
SSDU:
|
116 |
+
MASKER:
|
117 |
+
PARAMS: {}
|
118 |
+
META_ARCHITECTURE: GeneralizedUnrolledCNN
|
119 |
+
UNET:
|
120 |
+
BLOCK_ORDER:
|
121 |
+
- conv
|
122 |
+
- relu
|
123 |
+
- conv
|
124 |
+
- relu
|
125 |
+
- batchnorm
|
126 |
+
- dropout
|
127 |
+
CHANNELS: 32
|
128 |
+
DROPOUT: 0.0
|
129 |
+
IN_CHANNELS: 2
|
130 |
+
NORMALIZE: false
|
131 |
+
NUM_POOL_LAYERS: 4
|
132 |
+
OUT_CHANNELS: 2
|
133 |
+
UNROLLED:
|
134 |
+
BLOCK_ARCHITECTURE: ResNet
|
135 |
+
CONV_BLOCK:
|
136 |
+
ACTIVATION: relu
|
137 |
+
NORM: none
|
138 |
+
NORM_AFFINE: false
|
139 |
+
ORDER:
|
140 |
+
- norm
|
141 |
+
- act
|
142 |
+
- drop
|
143 |
+
- conv
|
144 |
+
DROPOUT: 0.0
|
145 |
+
FIX_STEP_SIZE: false
|
146 |
+
KERNEL_SIZE:
|
147 |
+
- 3
|
148 |
+
NUM_EMAPS: 1
|
149 |
+
NUM_FEATURES: 128
|
150 |
+
NUM_RESBLOCKS: 2
|
151 |
+
NUM_UNROLLED_STEPS: 8
|
152 |
+
PADDING: ''
|
153 |
+
SHARE_WEIGHTS: false
|
154 |
+
WEIGHTS: ''
|
155 |
+
OUTPUT_DIR: "results://meddlr/tests/basic"
|
156 |
+
SEED: -1
|
157 |
+
SOLVER:
|
158 |
+
BASE_LR: 0.0001
|
159 |
+
BIAS_LR_FACTOR: 1.0
|
160 |
+
CHECKPOINT_PERIOD: 20
|
161 |
+
GAMMA: 0.1
|
162 |
+
GRAD_ACCUM_ITERS: 1
|
163 |
+
LR_SCHEDULER_NAME: WarmupMultiStepLR
|
164 |
+
MAX_ITER: 80
|
165 |
+
MOMENTUM: 0.9
|
166 |
+
OPTIMIZER: Adam
|
167 |
+
STEPS:
|
168 |
+
- 30000
|
169 |
+
TEST_BATCH_SIZE: 2
|
170 |
+
TRAIN_BATCH_SIZE: 1
|
171 |
+
WARMUP_FACTOR: 0.001
|
172 |
+
WARMUP_ITERS: 1000
|
173 |
+
WARMUP_METHOD: linear
|
174 |
+
WEIGHT_DECAY: 0.0001
|
175 |
+
WEIGHT_DECAY_BIAS: 0.0001
|
176 |
+
WEIGHT_DECAY_NORM: 0.0
|
177 |
+
TEST:
|
178 |
+
EVAL_PERIOD: 40
|
179 |
+
EXPECTED_RESULTS: []
|
180 |
+
FLUSH_PERIOD: 0
|
181 |
+
VAL_AS_TEST: true
|
182 |
+
VAL_METRICS:
|
183 |
+
RECON: []
|
184 |
+
TIME_SCALE: iter
|
185 |
+
VERSION: 1
|
186 |
+
VIS_PERIOD: 20
|
test-data/test-model/model-cpu.pt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:40b15fb17b19564d22eca3d037e7c7670e254591f439b7e0a388a41d4ed8d9d2
|
3 |
+
size 14382615
|