gabrielaltay
commited on
Commit
•
0bc48f4
1
Parent(s):
9132904
upload bigbiohub.py to hub from bigbio repo
Browse files- bigbiohub.py +4 -3
bigbiohub.py
CHANGED
@@ -4,11 +4,12 @@ from enum import Enum
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import logging
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from pathlib import Path
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from types import SimpleNamespace
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from typing import Dict, Iterable, List, Tuple
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import bioc
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import datasets
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logger = logging.getLogger(__name__)
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@@ -162,7 +163,7 @@ kb_features = datasets.Features(
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)
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def get_texts_and_offsets_from_bioc_ann(ann: bioc.BioCAnnotation) -> Tuple:
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offsets = [(loc.offset, loc.offset + loc.length) for loc in ann.locations]
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import logging
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from pathlib import Path
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from types import SimpleNamespace
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from typing import TYPE_CHECKING, Dict, Iterable, List, Tuple
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import datasets
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if TYPE_CHECKING:
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import bioc
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logger = logging.getLogger(__name__)
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)
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def get_texts_and_offsets_from_bioc_ann(ann: "bioc.BioCAnnotation") -> Tuple:
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offsets = [(loc.offset, loc.offset + loc.length) for loc in ann.locations]
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