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gabrielaltay commited on
Commit
0c99155
1 Parent(s): 9c8b546

fix parsing imports

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Files changed (1) hide show
  1. bionlp_st_2011_rel.py +6 -3
bionlp_st_2011_rel.py CHANGED
@@ -21,6 +21,9 @@ import datasets
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  from .bigbiohub import kb_features
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  from .bigbiohub import BigBioConfig
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  from .bigbiohub import Tasks
 
 
 
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  _DATASETNAME = "bionlp_st_2011_rel"
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  _DISPLAYNAME = "BioNLP 2011 REL"
@@ -235,14 +238,14 @@ class bionlp_st_2011_rel(datasets.GeneratorBasedBuilder):
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  if self.config.schema == "source":
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  txt_files = list(data_files.glob("*txt"))
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  for guid, txt_file in enumerate(txt_files):
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- example = parsing.parse_brat_file(txt_file, self._FILE_SUFFIX)
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  example["id"] = str(guid)
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  yield guid, example
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  elif self.config.schema == "bigbio_kb":
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  txt_files = list(data_files.glob("*txt"))
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  for guid, txt_file in enumerate(txt_files):
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- example = parsing.brat_parse_to_bigbio_kb(
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- parsing.parse_brat_file(txt_file, self._FILE_SUFFIX)
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  )
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  example["id"] = str(guid)
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  yield guid, example
 
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  from .bigbiohub import kb_features
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  from .bigbiohub import BigBioConfig
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  from .bigbiohub import Tasks
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+ from .bigbiohub import parse_brat_file
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+ from .bigbiohub import brat_parse_to_bigbio_kb
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+
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  _DATASETNAME = "bionlp_st_2011_rel"
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  _DISPLAYNAME = "BioNLP 2011 REL"
 
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  if self.config.schema == "source":
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  txt_files = list(data_files.glob("*txt"))
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  for guid, txt_file in enumerate(txt_files):
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+ example = parse_brat_file(txt_file, self._FILE_SUFFIX)
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  example["id"] = str(guid)
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  yield guid, example
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  elif self.config.schema == "bigbio_kb":
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  txt_files = list(data_files.glob("*txt"))
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  for guid, txt_file in enumerate(txt_files):
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+ example = brat_parse_to_bigbio_kb(
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+ parse_brat_file(txt_file, self._FILE_SUFFIX)
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  )
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  example["id"] = str(guid)
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  yield guid, example