id
stringlengths 17
20
| document_id
stringlengths 5
8
| passages
list | entities
list | events
list | coreferences
list | relations
list |
---|---|---|---|---|---|---|
1.0alpha7.train.400 | 14195597 | [
{
"id": "1.0alpha7.train.400.sent",
"type": "sentence",
"text": [
"Since the ggp1Δ mutant of S. cerevisiae is sensitive to Calcofluor White (CF) (Sigma, St. Louis, Mo.), a fluorescent stain that binds to nascent chitin molecules and prevents their assembly into fibrils (2), we tested if the phr1Δ mutant had similar behavior with respect to this compound. "
],
"offsets": [
[
0,
290
]
]
}
] | [
{
"id": "1.0alpha7.train.400.ent0_0",
"type": "reagent",
"text": [
"Calcofluor White"
],
"offsets": [
[
56,
72
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.400.ent1_0",
"type": "reagent",
"text": [
"CF"
],
"offsets": [
[
74,
76
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.400.ent2_0",
"type": "protein",
"text": [
"phr1Δ"
],
"offsets": [
[
225,
230
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.400.ent3_0",
"type": "chemical",
"text": [
"chitin"
],
"offsets": [
[
145,
151
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.400.ent4_0",
"type": "cell",
"text": [
"ggp1Δ mutant of S. cerevisiae"
],
"offsets": [
[
10,
39
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.400.ent5_0",
"type": "protein",
"text": [
"ggp1Δ"
],
"offsets": [
[
10,
15
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.400.ent6_0",
"type": "cell",
"text": [
"S. cerevisiae"
],
"offsets": [
[
26,
39
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.400.coref0",
"entity_ids": [
"1.0alpha7.train.400.ent0_0",
"1.0alpha7.train.400.ent1_0"
]
},
{
"id": "1.0alpha7.train.400.coref1",
"entity_ids": [
"1.0alpha7.train.400.ent2_0"
]
},
{
"id": "1.0alpha7.train.400.coref2",
"entity_ids": [
"1.0alpha7.train.400.ent3_0"
]
},
{
"id": "1.0alpha7.train.400.coref3",
"entity_ids": [
"1.0alpha7.train.400.ent4_0"
]
},
{
"id": "1.0alpha7.train.400.coref4",
"entity_ids": [
"1.0alpha7.train.400.ent5_0"
]
},
{
"id": "1.0alpha7.train.400.coref5",
"entity_ids": [
"1.0alpha7.train.400.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.400.rel0s1.0alpha7.train.400.ent0_0.o1.0alpha7.train.400.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.400.ent0_0",
"arg2_id": "1.0alpha7.train.400.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.400.rel0s1.0alpha7.train.400.ent1_0.o1.0alpha7.train.400.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.400.ent1_0",
"arg2_id": "1.0alpha7.train.400.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.401 | 25196729 | [
{
"id": "1.0alpha7.train.401.sent",
"type": "sentence",
"text": [
"The syntaxin-1a-Munc18 complex was further incubated with various quantities of tomosyn on the membranes for 2 hr. Syntaxin-1a bound to tomosyn was detected."
],
"offsets": [
[
0,
161
]
]
}
] | [
{
"id": "1.0alpha7.train.401.ent0_0",
"type": "protein",
"text": [
"syntaxin-1a"
],
"offsets": [
[
5,
16
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.401.ent1_0",
"type": "protein",
"text": [
"tomosyn"
],
"offsets": [
[
82,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "134957"
},
{
"db_name": "hgnc",
"db_id": "STXBP5"
},
{
"db_name": "uniprot",
"db_id": "Q5T5C0"
}
]
},
{
"id": "1.0alpha7.train.401.ent2_1",
"type": "protein",
"text": [
"tomosyn"
],
"offsets": [
[
140,
147
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "134957"
},
{
"db_name": "hgnc",
"db_id": "STXBP5"
},
{
"db_name": "uniprot",
"db_id": "Q5T5C0"
}
]
},
{
"id": "1.0alpha7.train.401.ent3_0",
"type": "protein-complex",
"text": [
"syntaxin-1a-Munc18"
],
"offsets": [
[
5,
23
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.401.ent4_0",
"type": "protein",
"text": [
"Munc18"
],
"offsets": [
[
17,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6812"
},
{
"db_name": "hgnc",
"db_id": "STXBP1"
},
{
"db_name": "uniprot",
"db_id": "P61764"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.401.coref0",
"entity_ids": [
"1.0alpha7.train.401.ent0_0"
]
},
{
"id": "1.0alpha7.train.401.coref1",
"entity_ids": [
"1.0alpha7.train.401.ent1_0",
"1.0alpha7.train.401.ent2_1"
]
},
{
"id": "1.0alpha7.train.401.coref2",
"entity_ids": [
"1.0alpha7.train.401.ent3_0"
]
},
{
"id": "1.0alpha7.train.401.coref3",
"entity_ids": [
"1.0alpha7.train.401.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.401.rel0s1.0alpha7.train.401.ent0_0.o1.0alpha7.train.401.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.401.ent0_0",
"arg2_id": "1.0alpha7.train.401.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.401.rel1s1.0alpha7.train.401.ent0_0.o1.0alpha7.train.401.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.401.ent0_0",
"arg2_id": "1.0alpha7.train.401.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.401.rel1s1.0alpha7.train.401.ent0_0.o1.0alpha7.train.401.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.401.ent0_0",
"arg2_id": "1.0alpha7.train.401.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.402 | 20172896 | [
{
"id": "1.0alpha7.train.402.sent",
"type": "sentence",
"text": [
"If the engrailed-2 gene were a direct target of Wnt signaling, which worked through β-catenin binding to LEF/TCF homologs on the promoter, then one would predict that induction of the engrailed-2 gene by Wnt and β-catenin could be blocked by a dominant negative TCF."
],
"offsets": [
[
0,
266
]
]
}
] | [
{
"id": "1.0alpha7.train.402.ent0_0",
"type": "protein",
"text": [
"β-catenin"
],
"offsets": [
[
84,
93
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.402.ent1_1",
"type": "protein",
"text": [
"β-catenin"
],
"offsets": [
[
212,
221
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.402.ent2_0",
"type": "protein-family",
"text": [
"LEF/TCF"
],
"offsets": [
[
105,
112
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.402.ent3_0",
"type": "protein-family",
"text": [
"LEF"
],
"offsets": [
[
105,
108
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.402.ent4_0",
"type": "gene",
"text": [
"engrailed-2"
],
"offsets": [
[
7,
18
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2020"
},
{
"db_name": "hgnc",
"db_id": "EN2"
}
]
},
{
"id": "1.0alpha7.train.402.ent5_1",
"type": "gene",
"text": [
"engrailed-2"
],
"offsets": [
[
184,
195
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2020"
},
{
"db_name": "hgnc",
"db_id": "EN2"
}
]
},
{
"id": "1.0alpha7.train.402.ent6_0",
"type": "DNA",
"text": [
"promoter"
],
"offsets": [
[
129,
137
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.402.ent7_0",
"type": "protein-family",
"text": [
"Wnt"
],
"offsets": [
[
48,
51
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005817"
}
]
},
{
"id": "1.0alpha7.train.402.ent8_1",
"type": "protein-family",
"text": [
"Wnt"
],
"offsets": [
[
204,
207
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005817"
}
]
},
{
"id": "1.0alpha7.train.402.ent9_0",
"type": "protein-family",
"text": [
"TCF"
],
"offsets": [
[
109,
112
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.402.ent10_1",
"type": "protein-family",
"text": [
"TCF"
],
"offsets": [
[
262,
265
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.402.coref0",
"entity_ids": [
"1.0alpha7.train.402.ent0_0",
"1.0alpha7.train.402.ent1_1"
]
},
{
"id": "1.0alpha7.train.402.coref1",
"entity_ids": [
"1.0alpha7.train.402.ent2_0",
"1.0alpha7.train.402.ent3_0"
]
},
{
"id": "1.0alpha7.train.402.coref2",
"entity_ids": [
"1.0alpha7.train.402.ent4_0",
"1.0alpha7.train.402.ent5_1"
]
},
{
"id": "1.0alpha7.train.402.coref3",
"entity_ids": [
"1.0alpha7.train.402.ent6_0"
]
},
{
"id": "1.0alpha7.train.402.coref4",
"entity_ids": [
"1.0alpha7.train.402.ent7_0",
"1.0alpha7.train.402.ent8_1"
]
},
{
"id": "1.0alpha7.train.402.coref5",
"entity_ids": [
"1.0alpha7.train.402.ent9_0",
"1.0alpha7.train.402.ent10_1"
]
}
] | [
{
"id": "1.0alpha7.train.402.rel0s1.0alpha7.train.402.ent0_0.o1.0alpha7.train.402.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.402.ent0_0",
"arg2_id": "1.0alpha7.train.402.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.402.rel0s1.0alpha7.train.402.ent0_0.o1.0alpha7.train.402.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.402.ent0_0",
"arg2_id": "1.0alpha7.train.402.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.402.rel0s1.0alpha7.train.402.ent1_1.o1.0alpha7.train.402.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.402.ent1_1",
"arg2_id": "1.0alpha7.train.402.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.402.rel0s1.0alpha7.train.402.ent1_1.o1.0alpha7.train.402.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.402.ent1_1",
"arg2_id": "1.0alpha7.train.402.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.403 | 1931877 | [
{
"id": "1.0alpha7.train.403.sent",
"type": "sentence",
"text": [
" Sp1, Sp3, and Sp4 bind to the GC box of the ODC promoter. "
],
"offsets": [
[
0,
64
]
]
}
] | [
{
"id": "1.0alpha7.train.403.ent0_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
1,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.403.ent1_0",
"type": "DNA",
"text": [
"ODC promoter"
],
"offsets": [
[
49,
61
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.403.ent2_0",
"type": "protein",
"text": [
"Sp3"
],
"offsets": [
[
7,
10
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6670"
},
{
"db_name": "hgnc",
"db_id": "SP3"
},
{
"db_name": "uniprot",
"db_id": "Q02447"
}
]
},
{
"id": "1.0alpha7.train.403.ent3_0",
"type": "protein",
"text": [
"Sp4"
],
"offsets": [
[
17,
20
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6671"
},
{
"db_name": "hgnc",
"db_id": "SP4"
},
{
"db_name": "uniprot",
"db_id": "Q02446"
}
]
},
{
"id": "1.0alpha7.train.403.ent4_0",
"type": "DNA",
"text": [
"GC box"
],
"offsets": [
[
34,
40
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.403.coref0",
"entity_ids": [
"1.0alpha7.train.403.ent0_0"
]
},
{
"id": "1.0alpha7.train.403.coref1",
"entity_ids": [
"1.0alpha7.train.403.ent1_0"
]
},
{
"id": "1.0alpha7.train.403.coref2",
"entity_ids": [
"1.0alpha7.train.403.ent2_0"
]
},
{
"id": "1.0alpha7.train.403.coref3",
"entity_ids": [
"1.0alpha7.train.403.ent3_0"
]
},
{
"id": "1.0alpha7.train.403.coref4",
"entity_ids": [
"1.0alpha7.train.403.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.403.rel0s1.0alpha7.train.403.ent0_0.o1.0alpha7.train.403.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.403.ent0_0",
"arg2_id": "1.0alpha7.train.403.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.403.rel1s1.0alpha7.train.403.ent2_0.o1.0alpha7.train.403.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.403.ent2_0",
"arg2_id": "1.0alpha7.train.403.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.403.rel2s1.0alpha7.train.403.ent3_0.o1.0alpha7.train.403.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.403.ent3_0",
"arg2_id": "1.0alpha7.train.403.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.403.rel3s1.0alpha7.train.403.ent0_0.o1.0alpha7.train.403.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.403.ent0_0",
"arg2_id": "1.0alpha7.train.403.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.403.rel4s1.0alpha7.train.403.ent1_0.o1.0alpha7.train.403.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.403.ent1_0",
"arg2_id": "1.0alpha7.train.403.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.403.rel5s1.0alpha7.train.403.ent1_0.o1.0alpha7.train.403.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.403.ent1_0",
"arg2_id": "1.0alpha7.train.403.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.404 | 3584980 | [
{
"id": "1.0alpha7.train.404.sent",
"type": "sentence",
"text": [
" Based on the present study, we propose that Axam may form a complex with Axin constitutively in the absence of Wnt, thereby Dvl does not bind to Axin. "
],
"offsets": [
[
0,
158
]
]
}
] | [
{
"id": "1.0alpha7.train.404.ent0_0",
"type": "protein",
"text": [
"Axam"
],
"offsets": [
[
46,
50
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "59343"
},
{
"db_name": "hgnc",
"db_id": "SENP2"
},
{
"db_name": "uniprot",
"db_id": "Q9HC62"
}
]
},
{
"id": "1.0alpha7.train.404.ent1_0",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
76,
80
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.404.ent2_1",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
151,
155
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.404.ent3_0",
"type": "protein-family",
"text": [
"Wnt"
],
"offsets": [
[
115,
118
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005817"
}
]
},
{
"id": "1.0alpha7.train.404.ent4_0",
"type": "protein",
"text": [
"Dvl"
],
"offsets": [
[
129,
132
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1855"
},
{
"db_name": "hgnc",
"db_id": "DVL1"
},
{
"db_name": "uniprot",
"db_id": "O14640"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.404.coref0",
"entity_ids": [
"1.0alpha7.train.404.ent0_0"
]
},
{
"id": "1.0alpha7.train.404.coref1",
"entity_ids": [
"1.0alpha7.train.404.ent1_0",
"1.0alpha7.train.404.ent2_1"
]
},
{
"id": "1.0alpha7.train.404.coref2",
"entity_ids": [
"1.0alpha7.train.404.ent3_0"
]
},
{
"id": "1.0alpha7.train.404.coref3",
"entity_ids": [
"1.0alpha7.train.404.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.404.rel0s1.0alpha7.train.404.ent0_0.o1.0alpha7.train.404.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.404.ent0_0",
"arg2_id": "1.0alpha7.train.404.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.404.rel0s1.0alpha7.train.404.ent0_0.o1.0alpha7.train.404.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.404.ent0_0",
"arg2_id": "1.0alpha7.train.404.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.404.rel1s1.0alpha7.train.404.ent1_0.o1.0alpha7.train.404.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.404.ent1_0",
"arg2_id": "1.0alpha7.train.404.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.404.rel1s1.0alpha7.train.404.ent2_1.o1.0alpha7.train.404.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.404.ent2_1",
"arg2_id": "1.0alpha7.train.404.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.405 | 1845538 | [
{
"id": "1.0alpha7.train.405.sent",
"type": "sentence",
"text": [
" To further map the PR binding motif of RIZ proteins, truncation mutants of RIZ1 were generated by in vitro transcription and translation of various mutant constructs (Fig. 5 A). "
],
"offsets": [
[
0,
190
]
]
}
] | [
{
"id": "1.0alpha7.train.405.ent0_0",
"type": "protein",
"text": [
"PR"
],
"offsets": [
[
26,
28
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5241"
},
{
"db_name": "hgnc",
"db_id": "PGR"
},
{
"db_name": "uniprot",
"db_id": "P06401"
}
]
},
{
"id": "1.0alpha7.train.405.ent1_0",
"type": "protein",
"text": [
"RIZ1"
],
"offsets": [
[
84,
88
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7799"
},
{
"db_name": "hgnc",
"db_id": "PRDM2"
},
{
"db_name": "uniprot",
"db_id": "Q13029"
}
]
},
{
"id": "1.0alpha7.train.405.ent2_0",
"type": "protein-family",
"text": [
"RIZ"
],
"offsets": [
[
47,
50
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR009170"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.405.coref0",
"entity_ids": [
"1.0alpha7.train.405.ent0_0"
]
},
{
"id": "1.0alpha7.train.405.coref1",
"entity_ids": [
"1.0alpha7.train.405.ent1_0"
]
},
{
"id": "1.0alpha7.train.405.coref2",
"entity_ids": [
"1.0alpha7.train.405.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.405.rel0s1.0alpha7.train.405.ent0_0.o1.0alpha7.train.405.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.405.ent0_0",
"arg2_id": "1.0alpha7.train.405.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.405.rel1s1.0alpha7.train.405.ent0_0.o1.0alpha7.train.405.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.405.ent0_0",
"arg2_id": "1.0alpha7.train.405.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.406 | 23330418 | [
{
"id": "1.0alpha7.train.406.sent",
"type": "sentence",
"text": [
"First, we tested whether anti-L1 Fab remains bound to L1 in endosomal compartments whose pH is slightly acidic: pH 6.0-6.5 in early endosomes and pH 5.0-6.0 in late endosomes (Nixon and Cataldo, 1995)."
],
"offsets": [
[
0,
201
]
]
}
] | [
{
"id": "1.0alpha7.train.406.ent0_0",
"type": "reagent",
"text": [
"anti-L1 Fab"
],
"offsets": [
[
25,
36
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.406.ent1_0",
"type": "protein-family",
"text": [
"L1"
],
"offsets": [
[
30,
32
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.406.ent2_1",
"type": "protein-family",
"text": [
"L1"
],
"offsets": [
[
54,
56
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.406.coref0",
"entity_ids": [
"1.0alpha7.train.406.ent0_0"
]
},
{
"id": "1.0alpha7.train.406.coref1",
"entity_ids": [
"1.0alpha7.train.406.ent1_0",
"1.0alpha7.train.406.ent2_1"
]
}
] | [] |
1.0alpha7.train.407 | 15411318 | [
{
"id": "1.0alpha7.train.407.sent",
"type": "sentence",
"text": [
" In NBS cells, neither Nbs1p70 nor Mre11 bound to E2F sites, whereas E2F1 binding was unaffected (Fig. 3C). "
],
"offsets": [
[
0,
114
]
]
}
] | [
{
"id": "1.0alpha7.train.407.ent0_0",
"type": "protein",
"text": [
"E2F1"
],
"offsets": [
[
73,
77
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1869"
},
{
"db_name": "hgnc",
"db_id": "E2F1"
},
{
"db_name": "uniprot",
"db_id": "Q01094"
}
]
},
{
"id": "1.0alpha7.train.407.ent1_0",
"type": "cell",
"text": [
"NBS"
],
"offsets": [
[
5,
8
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.407.ent2_0",
"type": "protein",
"text": [
"Mre11"
],
"offsets": [
[
37,
42
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4361"
},
{
"db_name": "hgnc",
"db_id": "MRE11"
},
{
"db_name": "uniprot",
"db_id": "P49959"
}
]
},
{
"id": "1.0alpha7.train.407.ent3_0",
"type": "protein-family",
"text": [
"E2F"
],
"offsets": [
[
53,
56
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR015633"
}
]
},
{
"id": "1.0alpha7.train.407.ent4_0",
"type": "protein",
"text": [
"Nbs1p70"
],
"offsets": [
[
24,
31
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.407.ent5_0",
"type": "DNA",
"text": [
"E2F sites"
],
"offsets": [
[
53,
62
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.407.coref0",
"entity_ids": [
"1.0alpha7.train.407.ent0_0"
]
},
{
"id": "1.0alpha7.train.407.coref1",
"entity_ids": [
"1.0alpha7.train.407.ent1_0"
]
},
{
"id": "1.0alpha7.train.407.coref2",
"entity_ids": [
"1.0alpha7.train.407.ent2_0"
]
},
{
"id": "1.0alpha7.train.407.coref3",
"entity_ids": [
"1.0alpha7.train.407.ent3_0"
]
},
{
"id": "1.0alpha7.train.407.coref4",
"entity_ids": [
"1.0alpha7.train.407.ent4_0"
]
},
{
"id": "1.0alpha7.train.407.coref5",
"entity_ids": [
"1.0alpha7.train.407.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.407.rel0s1.0alpha7.train.407.ent4_0.o1.0alpha7.train.407.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.407.ent4_0",
"arg2_id": "1.0alpha7.train.407.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.407.rel1s1.0alpha7.train.407.ent2_0.o1.0alpha7.train.407.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.407.ent2_0",
"arg2_id": "1.0alpha7.train.407.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.407.rel2s1.0alpha7.train.407.ent0_0.o1.0alpha7.train.407.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.407.ent0_0",
"arg2_id": "1.0alpha7.train.407.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.408 | 20250431 | [
{
"id": "1.0alpha7.train.408.sent",
"type": "sentence",
"text": [
"dCtBP also binds to Hairy and a number of transcriptional repressors."
],
"offsets": [
[
0,
71
]
]
}
] | [
{
"id": "1.0alpha7.train.408.ent0_0",
"type": "protein",
"text": [
"Hairy"
],
"offsets": [
[
21,
26
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P14003"
}
]
},
{
"id": "1.0alpha7.train.408.ent1_0",
"type": "protein",
"text": [
"dCtBP"
],
"offsets": [
[
0,
5
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O46036"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.408.coref0",
"entity_ids": [
"1.0alpha7.train.408.ent0_0"
]
},
{
"id": "1.0alpha7.train.408.coref1",
"entity_ids": [
"1.0alpha7.train.408.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.408.rel0s1.0alpha7.train.408.ent0_0.o1.0alpha7.train.408.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.408.ent0_0",
"arg2_id": "1.0alpha7.train.408.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.409 | 11989537 | [
{
"id": "1.0alpha7.train.409.sent",
"type": "sentence",
"text": [
" PIP2 also binds to vinculin, which then interacts with talin. "
],
"offsets": [
[
0,
66
]
]
}
] | [
{
"id": "1.0alpha7.train.409.ent0_0",
"type": "protein",
"text": [
"vinculin"
],
"offsets": [
[
21,
29
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7414"
},
{
"db_name": "hgnc",
"db_id": "VCL"
},
{
"db_name": "uniprot",
"db_id": "P18206"
}
]
},
{
"id": "1.0alpha7.train.409.ent1_0",
"type": "protein",
"text": [
"talin"
],
"offsets": [
[
58,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7094"
},
{
"db_name": "hgnc",
"db_id": "TLN1"
},
{
"db_name": "uniprot",
"db_id": "Q9Y490"
}
]
},
{
"id": "1.0alpha7.train.409.ent2_0",
"type": "chemical",
"text": [
"PIP2"
],
"offsets": [
[
1,
5
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5497157"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.409.coref0",
"entity_ids": [
"1.0alpha7.train.409.ent0_0"
]
},
{
"id": "1.0alpha7.train.409.coref1",
"entity_ids": [
"1.0alpha7.train.409.ent1_0"
]
},
{
"id": "1.0alpha7.train.409.coref2",
"entity_ids": [
"1.0alpha7.train.409.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.409.rel0s1.0alpha7.train.409.ent0_0.o1.0alpha7.train.409.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.409.ent0_0",
"arg2_id": "1.0alpha7.train.409.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.409.rel1s1.0alpha7.train.409.ent0_0.o1.0alpha7.train.409.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.409.ent0_0",
"arg2_id": "1.0alpha7.train.409.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.410 | 20472368 | [
{
"id": "1.0alpha7.train.410.sent",
"type": "sentence",
"text": [
"Concurrent binding of Sp1 and AP2 to the hTAFII55 promoter-proximal region The extended footprints exhibited by individual Sp1 and AP2 proteins raise an interesting possibility that both proteins may bind simultaneously to the hTAFII55 promoter."
],
"offsets": [
[
0,
253
]
]
}
] | [
{
"id": "1.0alpha7.train.410.ent0_0",
"type": "protein",
"text": [
"AP2"
],
"offsets": [
[
32,
35
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7020"
},
{
"db_name": "hgnc",
"db_id": "TFAP2A"
},
{
"db_name": "uniprot",
"db_id": "P05549"
}
]
},
{
"id": "1.0alpha7.train.410.ent1_1",
"type": "protein",
"text": [
"AP2"
],
"offsets": [
[
138,
141
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7020"
},
{
"db_name": "hgnc",
"db_id": "TFAP2A"
},
{
"db_name": "uniprot",
"db_id": "P05549"
}
]
},
{
"id": "1.0alpha7.train.410.ent2_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
23,
26
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.410.ent3_1",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
129,
132
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.410.ent4_0",
"type": "DNA",
"text": [
"hTAFII55 promoter"
],
"offsets": [
[
44,
61
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.410.ent5_1",
"type": "DNA",
"text": [
"hTAFII55 promoter"
],
"offsets": [
[
235,
252
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.410.ent6_0",
"type": "DNA",
"text": [
"hTAFII55 promoter-proximal region"
],
"offsets": [
[
44,
77
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.410.coref0",
"entity_ids": [
"1.0alpha7.train.410.ent0_0",
"1.0alpha7.train.410.ent1_1"
]
},
{
"id": "1.0alpha7.train.410.coref1",
"entity_ids": [
"1.0alpha7.train.410.ent2_0",
"1.0alpha7.train.410.ent3_1"
]
},
{
"id": "1.0alpha7.train.410.coref2",
"entity_ids": [
"1.0alpha7.train.410.ent4_0",
"1.0alpha7.train.410.ent5_1"
]
},
{
"id": "1.0alpha7.train.410.coref3",
"entity_ids": [
"1.0alpha7.train.410.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.410.rel0s1.0alpha7.train.410.ent2_0.o1.0alpha7.train.410.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent2_0",
"arg2_id": "1.0alpha7.train.410.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel0s1.0alpha7.train.410.ent2_0.o1.0alpha7.train.410.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent2_0",
"arg2_id": "1.0alpha7.train.410.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel0s1.0alpha7.train.410.ent3_1.o1.0alpha7.train.410.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent3_1",
"arg2_id": "1.0alpha7.train.410.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel0s1.0alpha7.train.410.ent3_1.o1.0alpha7.train.410.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent3_1",
"arg2_id": "1.0alpha7.train.410.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel1s1.0alpha7.train.410.ent0_0.o1.0alpha7.train.410.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent0_0",
"arg2_id": "1.0alpha7.train.410.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel1s1.0alpha7.train.410.ent0_0.o1.0alpha7.train.410.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent0_0",
"arg2_id": "1.0alpha7.train.410.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel1s1.0alpha7.train.410.ent1_1.o1.0alpha7.train.410.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent1_1",
"arg2_id": "1.0alpha7.train.410.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.410.rel1s1.0alpha7.train.410.ent1_1.o1.0alpha7.train.410.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.410.ent1_1",
"arg2_id": "1.0alpha7.train.410.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.411 | 9621758 | [
{
"id": "1.0alpha7.train.411.sent",
"type": "sentence",
"text": [
" Spectrin, which binds to F-actin beneath plasma membrane and forms a membrane cortical meshwork, also accumulates at the leading edges of motile cells (Burridge et al., 1982 ; Sormunen and Lehto, 1995 ). "
],
"offsets": [
[
0,
211
]
]
}
] | [
{
"id": "1.0alpha7.train.411.ent0_0",
"type": "protein-family",
"text": [
"Spectrin"
],
"offsets": [
[
1,
9
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002017"
}
]
},
{
"id": "1.0alpha7.train.411.ent1_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
29,
34
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004000"
}
]
},
{
"id": "1.0alpha7.train.411.ent2_0",
"type": "protein",
"text": [
"F-actin"
],
"offsets": [
[
27,
34
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.411.coref0",
"entity_ids": [
"1.0alpha7.train.411.ent0_0"
]
},
{
"id": "1.0alpha7.train.411.coref1",
"entity_ids": [
"1.0alpha7.train.411.ent1_0"
]
},
{
"id": "1.0alpha7.train.411.coref2",
"entity_ids": [
"1.0alpha7.train.411.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.411.rel0s1.0alpha7.train.411.ent0_0.o1.0alpha7.train.411.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.411.ent0_0",
"arg2_id": "1.0alpha7.train.411.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.412 | 762988 | [
{
"id": "1.0alpha7.train.412.sent",
"type": "sentence",
"text": [
" Although the residual activity was close to background, TPA may still be bound to PKC and thereby maintain phosphorylation and activation of the substrate. "
],
"offsets": [
[
0,
160
]
]
}
] | [
{
"id": "1.0alpha7.train.412.ent0_0",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
85,
88
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014375"
}
]
},
{
"id": "1.0alpha7.train.412.ent1_0",
"type": "chemical",
"text": [
"TPA"
],
"offsets": [
[
58,
61
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "4433882"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.412.coref0",
"entity_ids": [
"1.0alpha7.train.412.ent0_0"
]
},
{
"id": "1.0alpha7.train.412.coref1",
"entity_ids": [
"1.0alpha7.train.412.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.412.rel0s1.0alpha7.train.412.ent0_0.o1.0alpha7.train.412.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.412.ent0_0",
"arg2_id": "1.0alpha7.train.412.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.413 | 553419 | [
{
"id": "1.0alpha7.train.413.sent",
"type": "sentence",
"text": [
"Paxillin failed to bind to GST alone or to the SH2 domain of Grb2."
],
"offsets": [
[
0,
70
]
]
}
] | [
{
"id": "1.0alpha7.train.413.ent0_0",
"type": "protein-domain",
"text": [
"SH2"
],
"offsets": [
[
50,
53
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000980"
}
]
},
{
"id": "1.0alpha7.train.413.ent1_0",
"type": "protein",
"text": [
"Grb2"
],
"offsets": [
[
65,
69
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2885"
},
{
"db_name": "hgnc",
"db_id": "GRB2"
},
{
"db_name": "uniprot",
"db_id": "P62993"
}
]
},
{
"id": "1.0alpha7.train.413.ent2_0",
"type": "protein",
"text": [
"Paxillin"
],
"offsets": [
[
0,
8
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5829"
},
{
"db_name": "hgnc",
"db_id": "PXN"
},
{
"db_name": "uniprot",
"db_id": "P49023"
}
]
},
{
"id": "1.0alpha7.train.413.ent3_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
28,
31
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.413.coref0",
"entity_ids": [
"1.0alpha7.train.413.ent0_0"
]
},
{
"id": "1.0alpha7.train.413.coref1",
"entity_ids": [
"1.0alpha7.train.413.ent1_0"
]
},
{
"id": "1.0alpha7.train.413.coref2",
"entity_ids": [
"1.0alpha7.train.413.ent2_0"
]
},
{
"id": "1.0alpha7.train.413.coref3",
"entity_ids": [
"1.0alpha7.train.413.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.413.rel0s1.0alpha7.train.413.ent2_0.o1.0alpha7.train.413.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.413.ent2_0",
"arg2_id": "1.0alpha7.train.413.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.413.rel1s1.0alpha7.train.413.ent1_0.o1.0alpha7.train.413.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.413.ent1_0",
"arg2_id": "1.0alpha7.train.413.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.414 | 11787497 | [
{
"id": "1.0alpha7.train.414.sent",
"type": "sentence",
"text": [
" While the region of Apaf-1 that is involved in binding with Hsp90 is not known, our results demonstrate that Hsp90 binds to Apaf-1 at a different site than that of cyt c (data not shown). "
],
"offsets": [
[
0,
195
]
]
}
] | [
{
"id": "1.0alpha7.train.414.ent0_0",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
22,
28
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.414.ent1_1",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
129,
135
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.414.ent2_0",
"type": "protein-family",
"text": [
"Hsp90"
],
"offsets": [
[
63,
68
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001404"
}
]
},
{
"id": "1.0alpha7.train.414.ent3_1",
"type": "protein-family",
"text": [
"Hsp90"
],
"offsets": [
[
113,
118
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001404"
}
]
},
{
"id": "1.0alpha7.train.414.ent4_0",
"type": "protein",
"text": [
"cyt c"
],
"offsets": [
[
170,
175
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "54205"
},
{
"db_name": "hgnc",
"db_id": "CYCS"
},
{
"db_name": "uniprot",
"db_id": "P99999"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.414.coref0",
"entity_ids": [
"1.0alpha7.train.414.ent0_0",
"1.0alpha7.train.414.ent1_1"
]
},
{
"id": "1.0alpha7.train.414.coref1",
"entity_ids": [
"1.0alpha7.train.414.ent2_0",
"1.0alpha7.train.414.ent3_1"
]
},
{
"id": "1.0alpha7.train.414.coref2",
"entity_ids": [
"1.0alpha7.train.414.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.414.rel0s1.0alpha7.train.414.ent0_0.o1.0alpha7.train.414.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.414.ent0_0",
"arg2_id": "1.0alpha7.train.414.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.414.rel0s1.0alpha7.train.414.ent0_0.o1.0alpha7.train.414.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.414.ent0_0",
"arg2_id": "1.0alpha7.train.414.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.414.rel0s1.0alpha7.train.414.ent1_1.o1.0alpha7.train.414.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.414.ent1_1",
"arg2_id": "1.0alpha7.train.414.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.414.rel0s1.0alpha7.train.414.ent1_1.o1.0alpha7.train.414.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.414.ent1_1",
"arg2_id": "1.0alpha7.train.414.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.414.rel1s1.0alpha7.train.414.ent0_0.o1.0alpha7.train.414.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.414.ent0_0",
"arg2_id": "1.0alpha7.train.414.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.414.rel1s1.0alpha7.train.414.ent1_1.o1.0alpha7.train.414.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.414.ent1_1",
"arg2_id": "1.0alpha7.train.414.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.415 | 9615473 | [
{
"id": "1.0alpha7.train.415.sent",
"type": "sentence",
"text": [
" Since direct binding of PAK to paxillin was not observed, the precipitation of PAK by paxillin LD4 from cell and tissue lysates likely occurs as a result of its association with PIX (Fig. 7; Bagrodia et al., 1998 ; Manser et al., 1998 ). "
],
"offsets": [
[
0,
249
]
]
}
] | [
{
"id": "1.0alpha7.train.415.ent0_0",
"type": "protein-family",
"text": [
"PIX"
],
"offsets": [
[
184,
187
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.415.ent1_0",
"type": "protein-family",
"text": [
"PAK"
],
"offsets": [
[
26,
29
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.415.ent2_1",
"type": "protein-family",
"text": [
"PAK"
],
"offsets": [
[
83,
86
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.415.ent3_0",
"type": "protein",
"text": [
"paxillin"
],
"offsets": [
[
34,
42
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5829"
},
{
"db_name": "hgnc",
"db_id": "PXN"
},
{
"db_name": "uniprot",
"db_id": "P49023"
}
]
},
{
"id": "1.0alpha7.train.415.ent4_1",
"type": "protein",
"text": [
"paxillin"
],
"offsets": [
[
91,
99
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5829"
},
{
"db_name": "hgnc",
"db_id": "PXN"
},
{
"db_name": "uniprot",
"db_id": "P49023"
}
]
},
{
"id": "1.0alpha7.train.415.ent5_0",
"type": "protein-motif",
"text": [
"LD4"
],
"offsets": [
[
100,
103
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.415.coref0",
"entity_ids": [
"1.0alpha7.train.415.ent0_0"
]
},
{
"id": "1.0alpha7.train.415.coref1",
"entity_ids": [
"1.0alpha7.train.415.ent1_0",
"1.0alpha7.train.415.ent2_1"
]
},
{
"id": "1.0alpha7.train.415.coref2",
"entity_ids": [
"1.0alpha7.train.415.ent3_0",
"1.0alpha7.train.415.ent4_1"
]
},
{
"id": "1.0alpha7.train.415.coref3",
"entity_ids": [
"1.0alpha7.train.415.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.415.rel0s1.0alpha7.train.415.ent1_0.o1.0alpha7.train.415.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent1_0",
"arg2_id": "1.0alpha7.train.415.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel0s1.0alpha7.train.415.ent1_0.o1.0alpha7.train.415.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent1_0",
"arg2_id": "1.0alpha7.train.415.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel0s1.0alpha7.train.415.ent2_1.o1.0alpha7.train.415.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent2_1",
"arg2_id": "1.0alpha7.train.415.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel0s1.0alpha7.train.415.ent2_1.o1.0alpha7.train.415.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent2_1",
"arg2_id": "1.0alpha7.train.415.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel1s1.0alpha7.train.415.ent0_0.o1.0alpha7.train.415.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent0_0",
"arg2_id": "1.0alpha7.train.415.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel1s1.0alpha7.train.415.ent0_0.o1.0alpha7.train.415.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent0_0",
"arg2_id": "1.0alpha7.train.415.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel2s1.0alpha7.train.415.ent0_0.o1.0alpha7.train.415.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent0_0",
"arg2_id": "1.0alpha7.train.415.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.415.rel2s1.0alpha7.train.415.ent0_0.o1.0alpha7.train.415.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.415.ent0_0",
"arg2_id": "1.0alpha7.train.415.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.416 | 2941175 | [
{
"id": "1.0alpha7.train.416.sent",
"type": "sentence",
"text": [
"Munc18a is at once essential and inhibitory to secretion (8) because while Sec1p and its homologues are necessary for membrane trafficking and the final stages of protein secretion (9, 10), high affinity binding between Munc18a and syntaxin 1a also inhibits the association of vesicle SNAREs with syntaxin 1a (5-7, 11)."
],
"offsets": [
[
0,
319
]
]
}
] | [
{
"id": "1.0alpha7.train.416.ent0_0",
"type": "protein-complex",
"text": [
"SNAREs"
],
"offsets": [
[
285,
291
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.416.ent1_0",
"type": "protein",
"text": [
"Sec1p"
],
"offsets": [
[
75,
80
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "653677"
},
{
"db_name": "hgnc",
"db_id": "SEC1P"
},
{
"db_name": "uniprot",
"db_id": "NA"
}
]
},
{
"id": "1.0alpha7.train.416.ent2_0",
"type": "protein",
"text": [
"Munc18a"
],
"offsets": [
[
0,
7
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6812"
},
{
"db_name": "hgnc",
"db_id": "STXBP1"
},
{
"db_name": "uniprot",
"db_id": "P61764"
}
]
},
{
"id": "1.0alpha7.train.416.ent3_1",
"type": "protein",
"text": [
"Munc18a"
],
"offsets": [
[
220,
227
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6812"
},
{
"db_name": "hgnc",
"db_id": "STXBP1"
},
{
"db_name": "uniprot",
"db_id": "P61764"
}
]
},
{
"id": "1.0alpha7.train.416.ent4_0",
"type": "protein",
"text": [
"syntaxin 1a"
],
"offsets": [
[
232,
243
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.416.ent5_1",
"type": "protein",
"text": [
"syntaxin 1a"
],
"offsets": [
[
297,
308
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.416.coref0",
"entity_ids": [
"1.0alpha7.train.416.ent0_0"
]
},
{
"id": "1.0alpha7.train.416.coref1",
"entity_ids": [
"1.0alpha7.train.416.ent1_0"
]
},
{
"id": "1.0alpha7.train.416.coref2",
"entity_ids": [
"1.0alpha7.train.416.ent2_0",
"1.0alpha7.train.416.ent3_1"
]
},
{
"id": "1.0alpha7.train.416.coref3",
"entity_ids": [
"1.0alpha7.train.416.ent4_0",
"1.0alpha7.train.416.ent5_1"
]
}
] | [
{
"id": "1.0alpha7.train.416.rel0s1.0alpha7.train.416.ent2_0.o1.0alpha7.train.416.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.416.ent2_0",
"arg2_id": "1.0alpha7.train.416.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.416.rel0s1.0alpha7.train.416.ent2_0.o1.0alpha7.train.416.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.416.ent2_0",
"arg2_id": "1.0alpha7.train.416.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.416.rel0s1.0alpha7.train.416.ent3_1.o1.0alpha7.train.416.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.416.ent3_1",
"arg2_id": "1.0alpha7.train.416.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.416.rel0s1.0alpha7.train.416.ent3_1.o1.0alpha7.train.416.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.416.ent3_1",
"arg2_id": "1.0alpha7.train.416.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.416.rel1s1.0alpha7.train.416.ent0_0.o1.0alpha7.train.416.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.416.ent0_0",
"arg2_id": "1.0alpha7.train.416.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.416.rel1s1.0alpha7.train.416.ent0_0.o1.0alpha7.train.416.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.416.ent0_0",
"arg2_id": "1.0alpha7.train.416.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.417 | 3470292 | [
{
"id": "1.0alpha7.train.417.sent",
"type": "sentence",
"text": [
" A program of study focused on identifying these binding site(s) ( 5, 6, 46, 47) culminated in the discovery that synaptotagmin I bound AP-2 with high affinity in vitro ( 7). "
],
"offsets": [
[
0,
182
]
]
}
] | [
{
"id": "1.0alpha7.train.417.ent0_0",
"type": "protein",
"text": [
"synaptotagmin I"
],
"offsets": [
[
118,
133
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6857"
},
{
"db_name": "hgnc",
"db_id": "SYT1"
},
{
"db_name": "uniprot",
"db_id": "P21579"
}
]
},
{
"id": "1.0alpha7.train.417.ent1_0",
"type": "protein-complex",
"text": [
"AP-2"
],
"offsets": [
[
141,
145
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.417.coref0",
"entity_ids": [
"1.0alpha7.train.417.ent0_0"
]
},
{
"id": "1.0alpha7.train.417.coref1",
"entity_ids": [
"1.0alpha7.train.417.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.417.rel0s1.0alpha7.train.417.ent0_0.o1.0alpha7.train.417.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.417.ent0_0",
"arg2_id": "1.0alpha7.train.417.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.418 | 2068064 | [
{
"id": "1.0alpha7.train.418.sent",
"type": "sentence",
"text": [
" The percent tsf mutant coat protein bound to GroEL, however, does show a dependence upon GroEL/S concentration. "
],
"offsets": [
[
0,
117
]
]
}
] | [
{
"id": "1.0alpha7.train.418.ent0_0",
"type": "protein-family",
"text": [
"GroEL"
],
"offsets": [
[
49,
54
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR027409"
}
]
},
{
"id": "1.0alpha7.train.418.ent1_1",
"type": "protein-family",
"text": [
"GroEL"
],
"offsets": [
[
93,
98
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR027409"
}
]
},
{
"id": "1.0alpha7.train.418.ent2_0",
"type": "protein-complex",
"text": [
"GroEL/S"
],
"offsets": [
[
93,
100
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.418.ent3_0",
"type": "protein",
"text": [
"tsf mutant coat protein"
],
"offsets": [
[
15,
38
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.418.ent4_0",
"type": "protein-family",
"text": [
"coat protein"
],
"offsets": [
[
26,
38
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.418.coref0",
"entity_ids": [
"1.0alpha7.train.418.ent0_0",
"1.0alpha7.train.418.ent1_1"
]
},
{
"id": "1.0alpha7.train.418.coref1",
"entity_ids": [
"1.0alpha7.train.418.ent2_0"
]
},
{
"id": "1.0alpha7.train.418.coref2",
"entity_ids": [
"1.0alpha7.train.418.ent3_0"
]
},
{
"id": "1.0alpha7.train.418.coref3",
"entity_ids": [
"1.0alpha7.train.418.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.418.rel0s1.0alpha7.train.418.ent0_0.o1.0alpha7.train.418.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.418.ent0_0",
"arg2_id": "1.0alpha7.train.418.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.418.rel0s1.0alpha7.train.418.ent1_1.o1.0alpha7.train.418.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.418.ent1_1",
"arg2_id": "1.0alpha7.train.418.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.419 | 18178818 | [
{
"id": "1.0alpha7.train.419.sent",
"type": "sentence",
"text": [
" This was not because of reduced binding of cyclin A to the Cdk2, because cyclin A strongly activated the histone H1 kinase activity of the Texas Red-labeled GST-Cdk2 preparation (data not shown). "
],
"offsets": [
[
0,
203
]
]
}
] | [
{
"id": "1.0alpha7.train.419.ent0_0",
"type": "protein-family",
"text": [
"histone H1"
],
"offsets": [
[
110,
120
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005818"
}
]
},
{
"id": "1.0alpha7.train.419.ent1_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
163,
166
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.419.ent2_0",
"type": "experimental-construct",
"text": [
"GST-Cdk2"
],
"offsets": [
[
163,
171
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.419.ent3_0",
"type": "protein",
"text": [
"Cdk2"
],
"offsets": [
[
62,
66
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1017"
},
{
"db_name": "hgnc",
"db_id": "CDK2"
},
{
"db_name": "uniprot",
"db_id": "P24941"
}
]
},
{
"id": "1.0alpha7.train.419.ent4_1",
"type": "protein",
"text": [
"Cdk2"
],
"offsets": [
[
167,
171
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1017"
},
{
"db_name": "hgnc",
"db_id": "CDK2"
},
{
"db_name": "uniprot",
"db_id": "P24941"
}
]
},
{
"id": "1.0alpha7.train.419.ent5_0",
"type": "reagent",
"text": [
"Texas Red"
],
"offsets": [
[
145,
154
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.419.ent6_0",
"type": "protein",
"text": [
"cyclin A"
],
"offsets": [
[
45,
53
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8900"
},
{
"db_name": "hgnc",
"db_id": "CCNA1"
},
{
"db_name": "uniprot",
"db_id": "P78396"
}
]
},
{
"id": "1.0alpha7.train.419.ent7_1",
"type": "protein",
"text": [
"cyclin A"
],
"offsets": [
[
77,
85
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8900"
},
{
"db_name": "hgnc",
"db_id": "CCNA1"
},
{
"db_name": "uniprot",
"db_id": "P78396"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.419.coref0",
"entity_ids": [
"1.0alpha7.train.419.ent0_0"
]
},
{
"id": "1.0alpha7.train.419.coref1",
"entity_ids": [
"1.0alpha7.train.419.ent1_0"
]
},
{
"id": "1.0alpha7.train.419.coref2",
"entity_ids": [
"1.0alpha7.train.419.ent2_0"
]
},
{
"id": "1.0alpha7.train.419.coref3",
"entity_ids": [
"1.0alpha7.train.419.ent3_0",
"1.0alpha7.train.419.ent4_1"
]
},
{
"id": "1.0alpha7.train.419.coref4",
"entity_ids": [
"1.0alpha7.train.419.ent5_0"
]
},
{
"id": "1.0alpha7.train.419.coref5",
"entity_ids": [
"1.0alpha7.train.419.ent6_0",
"1.0alpha7.train.419.ent7_1"
]
}
] | [
{
"id": "1.0alpha7.train.419.rel0s1.0alpha7.train.419.ent3_0.o1.0alpha7.train.419.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.419.ent3_0",
"arg2_id": "1.0alpha7.train.419.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.419.rel0s1.0alpha7.train.419.ent3_0.o1.0alpha7.train.419.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.419.ent3_0",
"arg2_id": "1.0alpha7.train.419.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.419.rel0s1.0alpha7.train.419.ent4_1.o1.0alpha7.train.419.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.419.ent4_1",
"arg2_id": "1.0alpha7.train.419.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.419.rel0s1.0alpha7.train.419.ent4_1.o1.0alpha7.train.419.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.419.ent4_1",
"arg2_id": "1.0alpha7.train.419.ent7_1",
"normalized": []
}
] |
1.0alpha7.train.420 | 2986894 | [
{
"id": "1.0alpha7.train.420.sent",
"type": "sentence",
"text": [
" Further, adaptor proteins such as FE65, whose protein interaction domains bind the cytoplasmic portions of both LRP and APP ( 37), may also be involved in linking these two molecules. "
],
"offsets": [
[
0,
191
]
]
}
] | [
{
"id": "1.0alpha7.train.420.ent0_0",
"type": "protein-family",
"text": [
"FE65"
],
"offsets": [
[
37,
41
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039576"
}
]
},
{
"id": "1.0alpha7.train.420.ent1_0",
"type": "protein-family",
"text": [
"LRP"
],
"offsets": [
[
117,
120
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR019330"
}
]
},
{
"id": "1.0alpha7.train.420.ent2_0",
"type": "protein-family",
"text": [
"APP"
],
"offsets": [
[
126,
129
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR028866"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.420.coref0",
"entity_ids": [
"1.0alpha7.train.420.ent0_0"
]
},
{
"id": "1.0alpha7.train.420.coref1",
"entity_ids": [
"1.0alpha7.train.420.ent1_0"
]
},
{
"id": "1.0alpha7.train.420.coref2",
"entity_ids": [
"1.0alpha7.train.420.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.420.rel0s1.0alpha7.train.420.ent0_0.o1.0alpha7.train.420.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.420.ent0_0",
"arg2_id": "1.0alpha7.train.420.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.420.rel1s1.0alpha7.train.420.ent0_0.o1.0alpha7.train.420.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.420.ent0_0",
"arg2_id": "1.0alpha7.train.420.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.421 | 15771301 | [
{
"id": "1.0alpha7.train.421.sent",
"type": "sentence",
"text": [
" Lanes 16 and 17 are a longer autoradiographic exposure of lanes 14 and 15, to more clearly demonstrate the previously reported observation that MEIS1 binds to HOXA9 in the absence of PBX proteins ( 41). "
],
"offsets": [
[
0,
209
]
]
}
] | [
{
"id": "1.0alpha7.train.421.ent0_0",
"type": "protein",
"text": [
"HOXA9"
],
"offsets": [
[
163,
168
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3205"
},
{
"db_name": "hgnc",
"db_id": "HOXA9"
},
{
"db_name": "uniprot",
"db_id": "P31269"
}
]
},
{
"id": "1.0alpha7.train.421.ent1_0",
"type": "protein",
"text": [
"MEIS1"
],
"offsets": [
[
147,
152
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4211"
},
{
"db_name": "hgnc",
"db_id": "MEIS1"
},
{
"db_name": "uniprot",
"db_id": "U3KPR8"
}
]
},
{
"id": "1.0alpha7.train.421.ent2_0",
"type": "protein-family",
"text": [
"PBX"
],
"offsets": [
[
188,
191
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005542"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.421.coref0",
"entity_ids": [
"1.0alpha7.train.421.ent0_0"
]
},
{
"id": "1.0alpha7.train.421.coref1",
"entity_ids": [
"1.0alpha7.train.421.ent1_0"
]
},
{
"id": "1.0alpha7.train.421.coref2",
"entity_ids": [
"1.0alpha7.train.421.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.421.rel0s1.0alpha7.train.421.ent0_0.o1.0alpha7.train.421.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.421.ent0_0",
"arg2_id": "1.0alpha7.train.421.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.422 | 20260622 | [
{
"id": "1.0alpha7.train.422.sent",
"type": "sentence",
"text": [
" Confirming the two-hybrid data, DCAP binds to Axin ( Fig. 3, right panel). "
],
"offsets": [
[
0,
80
]
]
}
] | [
{
"id": "1.0alpha7.train.422.ent0_0",
"type": "protein",
"text": [
"DCAP"
],
"offsets": [
[
34,
38
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.422.ent1_0",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
49,
53
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.422.coref0",
"entity_ids": [
"1.0alpha7.train.422.ent0_0"
]
},
{
"id": "1.0alpha7.train.422.coref1",
"entity_ids": [
"1.0alpha7.train.422.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.422.rel0s1.0alpha7.train.422.ent0_0.o1.0alpha7.train.422.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.422.ent0_0",
"arg2_id": "1.0alpha7.train.422.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.423 | 22807496 | [
{
"id": "1.0alpha7.train.423.sent",
"type": "sentence",
"text": [
" The model suggests that Ral is bound to PLD but cannot directly activate the enzyme; therefore other molecules, such as Arf, Rac, or Rho are necessary for a fully activated signaling complex. "
],
"offsets": [
[
0,
199
]
]
}
] | [
{
"id": "1.0alpha7.train.423.ent0_0",
"type": "protein-family",
"text": [
"Ral"
],
"offsets": [
[
26,
29
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR028412"
}
]
},
{
"id": "1.0alpha7.train.423.ent1_0",
"type": "protein-family",
"text": [
"PLD"
],
"offsets": [
[
43,
46
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR015679"
}
]
},
{
"id": "1.0alpha7.train.423.ent2_0",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
130,
133
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
},
{
"id": "1.0alpha7.train.423.ent3_0",
"type": "protein-family",
"text": [
"Arf"
],
"offsets": [
[
124,
127
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR010868"
}
]
},
{
"id": "1.0alpha7.train.423.ent4_0",
"type": "protein-family",
"text": [
"Rho"
],
"offsets": [
[
139,
142
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004665"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.423.coref0",
"entity_ids": [
"1.0alpha7.train.423.ent0_0"
]
},
{
"id": "1.0alpha7.train.423.coref1",
"entity_ids": [
"1.0alpha7.train.423.ent1_0"
]
},
{
"id": "1.0alpha7.train.423.coref2",
"entity_ids": [
"1.0alpha7.train.423.ent2_0"
]
},
{
"id": "1.0alpha7.train.423.coref3",
"entity_ids": [
"1.0alpha7.train.423.ent3_0"
]
},
{
"id": "1.0alpha7.train.423.coref4",
"entity_ids": [
"1.0alpha7.train.423.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.423.rel0s1.0alpha7.train.423.ent0_0.o1.0alpha7.train.423.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.423.ent0_0",
"arg2_id": "1.0alpha7.train.423.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.424 | 12711193 | [
{
"id": "1.0alpha7.train.424.sent",
"type": "sentence",
"text": [
" Regulation of 3' splice site choice, both positive and negative, can be realized by influencing the pyrimidine tract binding of U2AF (Tian and Maniatis 1993 ; Valcarcel et al. 1993 ; Reed 1996 ). "
],
"offsets": [
[
0,
203
]
]
}
] | [
{
"id": "1.0alpha7.train.424.ent0_0",
"type": "DNA",
"text": [
"pyrimidine tract"
],
"offsets": [
[
102,
118
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.424.ent1_0",
"type": "protein-family",
"text": [
"U2AF"
],
"offsets": [
[
131,
135
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.424.coref0",
"entity_ids": [
"1.0alpha7.train.424.ent0_0"
]
},
{
"id": "1.0alpha7.train.424.coref1",
"entity_ids": [
"1.0alpha7.train.424.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.424.rel0s1.0alpha7.train.424.ent0_0.o1.0alpha7.train.424.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.424.ent0_0",
"arg2_id": "1.0alpha7.train.424.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.425 | 24577808 | [
{
"id": "1.0alpha7.train.425.sent",
"type": "sentence",
"text": [
" In this light, it is interesting that the wild-type GSK3 strongly stimulated the binding of Axin to LRP-5, whereas a kinase-dead GSK3 did not. "
],
"offsets": [
[
0,
149
]
]
}
] | [
{
"id": "1.0alpha7.train.425.ent0_0",
"type": "protein",
"text": [
"LRP-5"
],
"offsets": [
[
104,
109
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4041"
},
{
"db_name": "hgnc",
"db_id": "LRP5"
},
{
"db_name": "uniprot",
"db_id": "O75197"
}
]
},
{
"id": "1.0alpha7.train.425.ent1_0",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
95,
99
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.425.ent2_0",
"type": "protein-complex",
"text": [
"GSK3"
],
"offsets": [
[
54,
58
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.425.ent3_1",
"type": "protein-complex",
"text": [
"GSK3"
],
"offsets": [
[
134,
138
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.425.ent4_0",
"type": "protein",
"text": [
"kinase-dead GSK3"
],
"offsets": [
[
122,
138
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.425.coref0",
"entity_ids": [
"1.0alpha7.train.425.ent0_0"
]
},
{
"id": "1.0alpha7.train.425.coref1",
"entity_ids": [
"1.0alpha7.train.425.ent1_0"
]
},
{
"id": "1.0alpha7.train.425.coref2",
"entity_ids": [
"1.0alpha7.train.425.ent2_0",
"1.0alpha7.train.425.ent3_1"
]
},
{
"id": "1.0alpha7.train.425.coref3",
"entity_ids": [
"1.0alpha7.train.425.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.425.rel0s1.0alpha7.train.425.ent0_0.o1.0alpha7.train.425.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.425.ent0_0",
"arg2_id": "1.0alpha7.train.425.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.426 | 12486893 | [
{
"id": "1.0alpha7.train.426.sent",
"type": "sentence",
"text": [
"ASF/SF2 binds a purine-rich element positioned within the 3'UTR of the mature PKCI-r mRNA."
],
"offsets": [
[
0,
94
]
]
}
] | [
{
"id": "1.0alpha7.train.426.ent0_0",
"type": "RNA",
"text": [
"PKCI-r mRNA"
],
"offsets": [
[
82,
93
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.426.ent1_0",
"type": "protein",
"text": [
"ASF/SF2"
],
"offsets": [
[
0,
7
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6426"
},
{
"db_name": "hgnc",
"db_id": "SRSF1"
},
{
"db_name": "uniprot",
"db_id": "Q07955"
}
]
},
{
"id": "1.0alpha7.train.426.ent2_0",
"type": "RNA",
"text": [
"3'UTR"
],
"offsets": [
[
60,
65
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.426.ent3_0",
"type": "DNA",
"text": [
"purine-rich element"
],
"offsets": [
[
17,
36
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.426.coref0",
"entity_ids": [
"1.0alpha7.train.426.ent0_0"
]
},
{
"id": "1.0alpha7.train.426.coref1",
"entity_ids": [
"1.0alpha7.train.426.ent1_0"
]
},
{
"id": "1.0alpha7.train.426.coref2",
"entity_ids": [
"1.0alpha7.train.426.ent2_0"
]
},
{
"id": "1.0alpha7.train.426.coref3",
"entity_ids": [
"1.0alpha7.train.426.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.426.rel0s1.0alpha7.train.426.ent1_0.o1.0alpha7.train.426.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.426.ent1_0",
"arg2_id": "1.0alpha7.train.426.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.427 | 11846855 | [
{
"id": "1.0alpha7.train.427.sent",
"type": "sentence",
"text": [
" To investigate whether the K12 and K23 double mutations in eIF2beta reduced binding between eIF2 and eIF5 in vitro, we conducted pull-down assays with GST-eIF5 and wild-type or mutant eIF2 present in WCEs. "
],
"offsets": [
[
0,
216
]
]
}
] | [
{
"id": "1.0alpha7.train.427.ent0_0",
"type": "protein",
"text": [
"eIF2beta"
],
"offsets": [
[
63,
71
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8894"
},
{
"db_name": "hgnc",
"db_id": "EIF2S2"
},
{
"db_name": "uniprot",
"db_id": "P20042"
}
]
},
{
"id": "1.0alpha7.train.427.ent1_0",
"type": "mutation",
"text": [
"K12"
],
"offsets": [
[
29,
32
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.427.ent2_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
159,
162
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.427.ent3_0",
"type": "mutation",
"text": [
"K23"
],
"offsets": [
[
38,
41
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.427.ent4_0",
"type": "protein-complex",
"text": [
"eIF2"
],
"offsets": [
[
97,
101
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.427.ent5_1",
"type": "protein-complex",
"text": [
"eIF2"
],
"offsets": [
[
193,
197
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.427.ent6_0",
"type": "protein",
"text": [
"eIF5"
],
"offsets": [
[
107,
111
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1983"
},
{
"db_name": "hgnc",
"db_id": "EIF5"
},
{
"db_name": "uniprot",
"db_id": "P55010"
}
]
},
{
"id": "1.0alpha7.train.427.ent7_1",
"type": "protein",
"text": [
"eIF5"
],
"offsets": [
[
163,
167
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1983"
},
{
"db_name": "hgnc",
"db_id": "EIF5"
},
{
"db_name": "uniprot",
"db_id": "P55010"
}
]
},
{
"id": "1.0alpha7.train.427.ent8_0",
"type": "experimental-construct",
"text": [
"GST-eIF5"
],
"offsets": [
[
159,
167
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.427.coref0",
"entity_ids": [
"1.0alpha7.train.427.ent0_0"
]
},
{
"id": "1.0alpha7.train.427.coref1",
"entity_ids": [
"1.0alpha7.train.427.ent1_0"
]
},
{
"id": "1.0alpha7.train.427.coref2",
"entity_ids": [
"1.0alpha7.train.427.ent2_0"
]
},
{
"id": "1.0alpha7.train.427.coref3",
"entity_ids": [
"1.0alpha7.train.427.ent3_0"
]
},
{
"id": "1.0alpha7.train.427.coref4",
"entity_ids": [
"1.0alpha7.train.427.ent4_0",
"1.0alpha7.train.427.ent5_1"
]
},
{
"id": "1.0alpha7.train.427.coref5",
"entity_ids": [
"1.0alpha7.train.427.ent6_0",
"1.0alpha7.train.427.ent7_1"
]
},
{
"id": "1.0alpha7.train.427.coref6",
"entity_ids": [
"1.0alpha7.train.427.ent8_0"
]
}
] | [
{
"id": "1.0alpha7.train.427.rel0s1.0alpha7.train.427.ent4_0.o1.0alpha7.train.427.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.427.ent4_0",
"arg2_id": "1.0alpha7.train.427.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.427.rel0s1.0alpha7.train.427.ent4_0.o1.0alpha7.train.427.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.427.ent4_0",
"arg2_id": "1.0alpha7.train.427.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.427.rel0s1.0alpha7.train.427.ent5_1.o1.0alpha7.train.427.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.427.ent5_1",
"arg2_id": "1.0alpha7.train.427.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.427.rel0s1.0alpha7.train.427.ent5_1.o1.0alpha7.train.427.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.427.ent5_1",
"arg2_id": "1.0alpha7.train.427.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.427.rel1s1.0alpha7.train.427.ent2_0.o1.0alpha7.train.427.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.427.ent2_0",
"arg2_id": "1.0alpha7.train.427.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.427.rel1s1.0alpha7.train.427.ent2_0.o1.0alpha7.train.427.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.427.ent2_0",
"arg2_id": "1.0alpha7.train.427.ent7_1",
"normalized": []
}
] |
1.0alpha7.train.428 | 6744203 | [
{
"id": "1.0alpha7.train.428.sent",
"type": "sentence",
"text": [
" As shown in Fig. 3 E, when 8-azido-[gamma-32] GTP was covalently bound to Rad, addition of nm23 caused reduction in amount of [gamma-32] labeling on Rad, indicating that GTP was being hydrolyzed in situ. "
],
"offsets": [
[
0,
212
]
]
}
] | [
{
"id": "1.0alpha7.train.428.ent0_0",
"type": "experiment-tag",
"text": [
"8-azido-[gamma-32]"
],
"offsets": [
[
29,
47
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.428.ent1_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
48,
51
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.428.ent2_1",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
176,
179
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.428.ent3_0",
"type": "protein-family",
"text": [
"Rad"
],
"offsets": [
[
77,
80
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR028869"
}
]
},
{
"id": "1.0alpha7.train.428.ent4_1",
"type": "protein-family",
"text": [
"Rad"
],
"offsets": [
[
154,
157
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR028869"
}
]
},
{
"id": "1.0alpha7.train.428.ent5_0",
"type": "protein-family",
"text": [
"nm23"
],
"offsets": [
[
95,
99
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.428.ent6_0",
"type": "chemical",
"text": [
"8-azido-[gamma-32] GTP"
],
"offsets": [
[
29,
51
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.428.coref0",
"entity_ids": [
"1.0alpha7.train.428.ent0_0"
]
},
{
"id": "1.0alpha7.train.428.coref1",
"entity_ids": [
"1.0alpha7.train.428.ent1_0",
"1.0alpha7.train.428.ent2_1"
]
},
{
"id": "1.0alpha7.train.428.coref2",
"entity_ids": [
"1.0alpha7.train.428.ent3_0",
"1.0alpha7.train.428.ent4_1"
]
},
{
"id": "1.0alpha7.train.428.coref3",
"entity_ids": [
"1.0alpha7.train.428.ent5_0"
]
},
{
"id": "1.0alpha7.train.428.coref4",
"entity_ids": [
"1.0alpha7.train.428.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.428.rel0s1.0alpha7.train.428.ent3_0.o1.0alpha7.train.428.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.428.ent3_0",
"arg2_id": "1.0alpha7.train.428.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.428.rel0s1.0alpha7.train.428.ent4_1.o1.0alpha7.train.428.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.428.ent4_1",
"arg2_id": "1.0alpha7.train.428.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.429 | 11231991 | [
{
"id": "1.0alpha7.train.429.sent",
"type": "sentence",
"text": [
"This is in agreement with those reported by Seong et al. (1997) in the mapping of antigenic determinants for Bor56 in which it was found that human IgM antibody predominantly bound to AD I and AD III regions."
],
"offsets": [
[
0,
211
]
]
}
] | [
{
"id": "1.0alpha7.train.429.ent0_0",
"type": "protein",
"text": [
"Bor56"
],
"offsets": [
[
111,
116
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.429.ent1_0",
"type": "reagent",
"text": [
"IgM"
],
"offsets": [
[
151,
154
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.429.ent2_0",
"type": "protein-domain",
"text": [
"AD I"
],
"offsets": [
[
187,
191
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.429.ent3_0",
"type": "protein-domain",
"text": [
"AD III"
],
"offsets": [
[
196,
202
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.429.coref0",
"entity_ids": [
"1.0alpha7.train.429.ent0_0"
]
},
{
"id": "1.0alpha7.train.429.coref1",
"entity_ids": [
"1.0alpha7.train.429.ent1_0"
]
},
{
"id": "1.0alpha7.train.429.coref2",
"entity_ids": [
"1.0alpha7.train.429.ent2_0"
]
},
{
"id": "1.0alpha7.train.429.coref3",
"entity_ids": [
"1.0alpha7.train.429.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.429.rel0s1.0alpha7.train.429.ent0_0.o1.0alpha7.train.429.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.429.ent0_0",
"arg2_id": "1.0alpha7.train.429.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.430 | 4638492 | [
{
"id": "1.0alpha7.train.430.sent",
"type": "sentence",
"text": [
"A18 hnRNP Binds Specifically to RPA2 and Thioredoxin 3′-UTRs"
],
"offsets": [
[
0,
60
]
]
}
] | [
{
"id": "1.0alpha7.train.430.ent0_0",
"type": "RNA",
"text": [
"3′-UTRs"
],
"offsets": [
[
53,
60
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.430.ent1_0",
"type": "RNA",
"text": [
"Thioredoxin 3′-UTRs"
],
"offsets": [
[
41,
60
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.430.ent2_0",
"type": "protein-RNA-complex",
"text": [
"A18 hnRNP"
],
"offsets": [
[
0,
9
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.430.ent3_0",
"type": "RNA",
"text": [
"Thioredoxin"
],
"offsets": [
[
41,
52
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.430.ent4_0",
"type": "RNA",
"text": [
"RPA2"
],
"offsets": [
[
32,
36
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.430.coref0",
"entity_ids": [
"1.0alpha7.train.430.ent0_0"
]
},
{
"id": "1.0alpha7.train.430.coref1",
"entity_ids": [
"1.0alpha7.train.430.ent1_0"
]
},
{
"id": "1.0alpha7.train.430.coref2",
"entity_ids": [
"1.0alpha7.train.430.ent2_0"
]
},
{
"id": "1.0alpha7.train.430.coref3",
"entity_ids": [
"1.0alpha7.train.430.ent3_0"
]
},
{
"id": "1.0alpha7.train.430.coref4",
"entity_ids": [
"1.0alpha7.train.430.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.430.rel0s1.0alpha7.train.430.ent2_0.o1.0alpha7.train.430.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.430.ent2_0",
"arg2_id": "1.0alpha7.train.430.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.430.rel1s1.0alpha7.train.430.ent1_0.o1.0alpha7.train.430.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.430.ent1_0",
"arg2_id": "1.0alpha7.train.430.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.431 | 4638492 | [
{
"id": "1.0alpha7.train.431.sent",
"type": "sentence",
"text": [
"Our immunotube technique revealed that A18 hnRNP binds to a large number of stress-responsive transcripts (Table I)."
],
"offsets": [
[
0,
116
]
]
}
] | [
{
"id": "1.0alpha7.train.431.ent0_0",
"type": "protein-RNA-complex",
"text": [
"A18 hnRNP"
],
"offsets": [
[
39,
48
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.431.coref0",
"entity_ids": [
"1.0alpha7.train.431.ent0_0"
]
}
] | [] |
1.0alpha7.train.432 | 9849120 | [
{
"id": "1.0alpha7.train.432.sent",
"type": "sentence",
"text": [
"As shown in Fig. 3 B, lane 2, phosphorylated p97 bound to p47."
],
"offsets": [
[
0,
62
]
]
}
] | [
{
"id": "1.0alpha7.train.432.ent0_0",
"type": "protein",
"text": [
"p47"
],
"offsets": [
[
58,
61
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55968"
},
{
"db_name": "hgnc",
"db_id": "NSFL1C"
},
{
"db_name": "uniprot",
"db_id": "Q9UNZ2"
}
]
},
{
"id": "1.0alpha7.train.432.ent1_0",
"type": "protein",
"text": [
"p97"
],
"offsets": [
[
45,
48
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7415"
},
{
"db_name": "hgnc",
"db_id": "VCP"
},
{
"db_name": "uniprot",
"db_id": "P55072"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.432.coref0",
"entity_ids": [
"1.0alpha7.train.432.ent0_0"
]
},
{
"id": "1.0alpha7.train.432.coref1",
"entity_ids": [
"1.0alpha7.train.432.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.432.rel0s1.0alpha7.train.432.ent0_0.o1.0alpha7.train.432.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.432.ent0_0",
"arg2_id": "1.0alpha7.train.432.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.433 | 1550912 | [
{
"id": "1.0alpha7.train.433.sent",
"type": "sentence",
"text": [
" In this experiment, any binding of heparin to Abeta should have been revealed as a series of electrophoretic bands whose mobility was progressively increased by increasing heparin concentrations. "
],
"offsets": [
[
0,
201
]
]
}
] | [
{
"id": "1.0alpha7.train.433.ent0_0",
"type": "chemical",
"text": [
"heparin"
],
"offsets": [
[
37,
44
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "772"
}
]
},
{
"id": "1.0alpha7.train.433.ent1_1",
"type": "chemical",
"text": [
"heparin"
],
"offsets": [
[
176,
183
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "772"
}
]
},
{
"id": "1.0alpha7.train.433.ent2_0",
"type": "peptide",
"text": [
"Abeta"
],
"offsets": [
[
49,
54
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.433.coref0",
"entity_ids": [
"1.0alpha7.train.433.ent0_0",
"1.0alpha7.train.433.ent1_1"
]
},
{
"id": "1.0alpha7.train.433.coref1",
"entity_ids": [
"1.0alpha7.train.433.ent2_0"
]
}
] | [] |
1.0alpha7.train.434 | 15814807 | [
{
"id": "1.0alpha7.train.434.sent",
"type": "sentence",
"text": [
"(A) Conservation of the CtBP binding motif PLDLSL among mouse deltaEF1 and adenovirus (Ad) E1A proteins."
],
"offsets": [
[
0,
107
]
]
}
] | [
{
"id": "1.0alpha7.train.434.ent0_0",
"type": "protein",
"text": [
"deltaEF1"
],
"offsets": [
[
64,
72
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6935"
},
{
"db_name": "hgnc",
"db_id": "ZEB1"
},
{
"db_name": "uniprot",
"db_id": "P37275"
}
]
},
{
"id": "1.0alpha7.train.434.ent1_0",
"type": "cell",
"text": [
"adenovirus"
],
"offsets": [
[
78,
88
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.434.ent2_0",
"type": "cell",
"text": [
"Ad"
],
"offsets": [
[
90,
92
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.434.ent3_0",
"type": "protein",
"text": [
"CtBP"
],
"offsets": [
[
25,
29
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q13363"
}
]
},
{
"id": "1.0alpha7.train.434.ent4_0",
"type": "protein",
"text": [
"E1A"
],
"offsets": [
[
94,
97
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P03255"
}
]
},
{
"id": "1.0alpha7.train.434.ent5_0",
"type": "protein-motif",
"text": [
"PLDLSL"
],
"offsets": [
[
44,
50
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.434.coref0",
"entity_ids": [
"1.0alpha7.train.434.ent0_0"
]
},
{
"id": "1.0alpha7.train.434.coref1",
"entity_ids": [
"1.0alpha7.train.434.ent1_0",
"1.0alpha7.train.434.ent2_0"
]
},
{
"id": "1.0alpha7.train.434.coref2",
"entity_ids": [
"1.0alpha7.train.434.ent3_0"
]
},
{
"id": "1.0alpha7.train.434.coref3",
"entity_ids": [
"1.0alpha7.train.434.ent4_0"
]
},
{
"id": "1.0alpha7.train.434.coref4",
"entity_ids": [
"1.0alpha7.train.434.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.434.rel0s1.0alpha7.train.434.ent0_0.o1.0alpha7.train.434.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.434.ent0_0",
"arg2_id": "1.0alpha7.train.434.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.434.rel1s1.0alpha7.train.434.ent3_0.o1.0alpha7.train.434.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.434.ent3_0",
"arg2_id": "1.0alpha7.train.434.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.435 | 1630826 | [
{
"id": "1.0alpha7.train.435.sent",
"type": "sentence",
"text": [
"The basic properties of the side chain of lysine 13, together with the observation that ATP protected this residue against modification by pyridoxal phosphate, not only argues for an active-site location for this lysine but also prompts speculation that lysine 13 could stabilize ATP binding because of interaction between the positively charged ϵ-amino group and the negatively charged phosphoryl groups of ATP."
],
"offsets": [
[
0,
412
]
]
}
] | [
{
"id": "1.0alpha7.train.435.ent0_0",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
88,
91
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
},
{
"id": "1.0alpha7.train.435.ent1_1",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
280,
283
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
},
{
"id": "1.0alpha7.train.435.ent2_2",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
408,
411
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.435.coref0",
"entity_ids": [
"1.0alpha7.train.435.ent0_0",
"1.0alpha7.train.435.ent1_1",
"1.0alpha7.train.435.ent2_2"
]
}
] | [] |
1.0alpha7.train.436 | 7266947 | [
{
"id": "1.0alpha7.train.436.sent",
"type": "sentence",
"text": [
" This latter hypothesis would be in agreement with the fact that overexpression of GTP-bound forms of rab proteins generally results in a gain of function ( 2, 3). "
],
"offsets": [
[
0,
168
]
]
}
] | [
{
"id": "1.0alpha7.train.436.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
84,
87
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.436.ent1_0",
"type": "protein-family",
"text": [
"rab"
],
"offsets": [
[
104,
107
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000806"
}
]
},
{
"id": "1.0alpha7.train.436.ent2_0",
"type": "protein",
"text": [
"GTP-bound forms of rab"
],
"offsets": [
[
84,
107
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.436.coref0",
"entity_ids": [
"1.0alpha7.train.436.ent0_0"
]
},
{
"id": "1.0alpha7.train.436.coref1",
"entity_ids": [
"1.0alpha7.train.436.ent1_0"
]
},
{
"id": "1.0alpha7.train.436.coref2",
"entity_ids": [
"1.0alpha7.train.436.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.436.rel0s1.0alpha7.train.436.ent0_0.o1.0alpha7.train.436.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.436.ent0_0",
"arg2_id": "1.0alpha7.train.436.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.437 | 16448553 | [
{
"id": "1.0alpha7.train.437.sent",
"type": "sentence",
"text": [
"Dynamin 2, a binding partner of the SH3 domain of amphiphysin (9), was recruited to the tubules when coexpressed with M-amphiphysin 2 (Fig. 2D), but not when coexpressed with its BAR* domain, which was sufficient to induce tubulation (Fig. 2, B and E)."
],
"offsets": [
[
0,
252
]
]
}
] | [
{
"id": "1.0alpha7.train.437.ent0_0",
"type": "protein-domain",
"text": [
"BAR*"
],
"offsets": [
[
179,
183
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.437.ent1_0",
"type": "protein-isoform",
"text": [
"M-amphiphysin 2"
],
"offsets": [
[
118,
133
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.437.ent2_0",
"type": "protein-domain",
"text": [
"SH3"
],
"offsets": [
[
36,
39
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001452"
}
]
},
{
"id": "1.0alpha7.train.437.ent3_0",
"type": "protein",
"text": [
"Dynamin 2"
],
"offsets": [
[
0,
9
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1785"
},
{
"db_name": "hgnc",
"db_id": "DNM2"
},
{
"db_name": "uniprot",
"db_id": "P50570"
}
]
},
{
"id": "1.0alpha7.train.437.ent4_0",
"type": "protein",
"text": [
"amphiphysin"
],
"offsets": [
[
50,
61
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "273"
},
{
"db_name": "hgnc",
"db_id": "AMPH"
},
{
"db_name": "uniprot",
"db_id": "P49418"
}
]
},
{
"id": "1.0alpha7.train.437.ent5_1",
"type": "protein",
"text": [
"amphiphysin"
],
"offsets": [
[
120,
131
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "273"
},
{
"db_name": "hgnc",
"db_id": "AMPH"
},
{
"db_name": "uniprot",
"db_id": "P49418"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.437.coref0",
"entity_ids": [
"1.0alpha7.train.437.ent0_0"
]
},
{
"id": "1.0alpha7.train.437.coref1",
"entity_ids": [
"1.0alpha7.train.437.ent1_0"
]
},
{
"id": "1.0alpha7.train.437.coref2",
"entity_ids": [
"1.0alpha7.train.437.ent2_0"
]
},
{
"id": "1.0alpha7.train.437.coref3",
"entity_ids": [
"1.0alpha7.train.437.ent3_0"
]
},
{
"id": "1.0alpha7.train.437.coref4",
"entity_ids": [
"1.0alpha7.train.437.ent4_0",
"1.0alpha7.train.437.ent5_1"
]
}
] | [
{
"id": "1.0alpha7.train.437.rel0s1.0alpha7.train.437.ent3_0.o1.0alpha7.train.437.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.437.ent3_0",
"arg2_id": "1.0alpha7.train.437.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.437.rel0s1.0alpha7.train.437.ent3_0.o1.0alpha7.train.437.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.437.ent3_0",
"arg2_id": "1.0alpha7.train.437.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.438 | 24683820 | [
{
"id": "1.0alpha7.train.438.sent",
"type": "sentence",
"text": [
"Next we compared the binding of PR and NF1 to the MMTV promoter presented either as free DNA or in minichromosomes."
],
"offsets": [
[
0,
118
]
]
}
] | [
{
"id": "1.0alpha7.train.438.ent0_0",
"type": "protein",
"text": [
"PR"
],
"offsets": [
[
33,
35
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5241"
},
{
"db_name": "hgnc",
"db_id": "PGR"
},
{
"db_name": "uniprot",
"db_id": "P06401"
}
]
},
{
"id": "1.0alpha7.train.438.ent1_0",
"type": "DNA",
"text": [
"MMTV promoter"
],
"offsets": [
[
53,
66
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.438.ent2_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
92,
95
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.438.ent3_0",
"type": "protein",
"text": [
"NF1"
],
"offsets": [
[
41,
44
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4763"
},
{
"db_name": "hgnc",
"db_id": "NF1"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.438.coref0",
"entity_ids": [
"1.0alpha7.train.438.ent0_0"
]
},
{
"id": "1.0alpha7.train.438.coref1",
"entity_ids": [
"1.0alpha7.train.438.ent1_0"
]
},
{
"id": "1.0alpha7.train.438.coref2",
"entity_ids": [
"1.0alpha7.train.438.ent2_0"
]
},
{
"id": "1.0alpha7.train.438.coref3",
"entity_ids": [
"1.0alpha7.train.438.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.438.rel0s1.0alpha7.train.438.ent0_0.o1.0alpha7.train.438.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.438.ent0_0",
"arg2_id": "1.0alpha7.train.438.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.438.rel1s1.0alpha7.train.438.ent1_0.o1.0alpha7.train.438.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.438.ent1_0",
"arg2_id": "1.0alpha7.train.438.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.439 | 12893112 | [
{
"id": "1.0alpha7.train.439.sent",
"type": "sentence",
"text": [
"Binding of trithorax and Polycomb proteins to the bithorax complex: dynamic changes during early Drosophila embryogenesis."
],
"offsets": [
[
0,
122
]
]
}
] | [
{
"id": "1.0alpha7.train.439.ent0_0",
"type": "protein-complex",
"text": [
"bithorax"
],
"offsets": [
[
50,
58
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.439.ent1_0",
"type": "protein-family",
"text": [
"Polycomb"
],
"offsets": [
[
25,
33
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.439.ent2_0",
"type": "protein-family",
"text": [
"trithorax"
],
"offsets": [
[
11,
20
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR016569"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.439.coref0",
"entity_ids": [
"1.0alpha7.train.439.ent0_0"
]
},
{
"id": "1.0alpha7.train.439.coref1",
"entity_ids": [
"1.0alpha7.train.439.ent1_0"
]
},
{
"id": "1.0alpha7.train.439.coref2",
"entity_ids": [
"1.0alpha7.train.439.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.439.rel0s1.0alpha7.train.439.ent0_0.o1.0alpha7.train.439.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.439.ent0_0",
"arg2_id": "1.0alpha7.train.439.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.439.rel1s1.0alpha7.train.439.ent0_0.o1.0alpha7.train.439.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.439.ent0_0",
"arg2_id": "1.0alpha7.train.439.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.440 | 1262529 | [
{
"id": "1.0alpha7.train.440.sent",
"type": "sentence",
"text": [
"p100 bound directly to the SH2 domains of both SHP-2 and the p85 subunit of phosphatidylinositol 3-kinase."
],
"offsets": [
[
0,
109
]
]
}
] | [
{
"id": "1.0alpha7.train.440.ent0_0",
"type": "protein-complex",
"text": [
"phosphatidylinositol 3-kinase"
],
"offsets": [
[
79,
108
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.440.ent1_0",
"type": "protein-domain",
"text": [
"SH2"
],
"offsets": [
[
28,
31
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000980"
}
]
},
{
"id": "1.0alpha7.train.440.ent2_0",
"type": "protein",
"text": [
"SHP-2"
],
"offsets": [
[
49,
54
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5781"
},
{
"db_name": "hgnc",
"db_id": "PTPN11"
},
{
"db_name": "uniprot",
"db_id": "Q06124"
}
]
},
{
"id": "1.0alpha7.train.440.ent3_0",
"type": "protein",
"text": [
"p100"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4791"
},
{
"db_name": "hgnc",
"db_id": "NFKB2"
},
{
"db_name": "uniprot",
"db_id": "Q00653"
}
]
},
{
"id": "1.0alpha7.train.440.ent4_0",
"type": "protein",
"text": [
"p85"
],
"offsets": [
[
64,
67
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5295"
},
{
"db_name": "hgnc",
"db_id": "PIK3R1"
},
{
"db_name": "uniprot",
"db_id": "P27986"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.440.coref0",
"entity_ids": [
"1.0alpha7.train.440.ent0_0"
]
},
{
"id": "1.0alpha7.train.440.coref1",
"entity_ids": [
"1.0alpha7.train.440.ent1_0"
]
},
{
"id": "1.0alpha7.train.440.coref2",
"entity_ids": [
"1.0alpha7.train.440.ent2_0"
]
},
{
"id": "1.0alpha7.train.440.coref3",
"entity_ids": [
"1.0alpha7.train.440.ent3_0"
]
},
{
"id": "1.0alpha7.train.440.coref4",
"entity_ids": [
"1.0alpha7.train.440.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.440.rel0s1.0alpha7.train.440.ent2_0.o1.0alpha7.train.440.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.440.ent2_0",
"arg2_id": "1.0alpha7.train.440.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.440.rel1s1.0alpha7.train.440.ent3_0.o1.0alpha7.train.440.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.440.ent3_0",
"arg2_id": "1.0alpha7.train.440.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.441 | 25205144 | [
{
"id": "1.0alpha7.train.441.sent",
"type": "sentence",
"text": [
"To further test whether CDI results from an action of endogenous calmodulin, whole-cell NMDA receptor-mediated currents were recorded following the infusion of a calmodulin binding peptide (CBP) into NR1/NR2A-expressing HEK 293 cells to reduce intracellular free calmodulin."
],
"offsets": [
[
0,
274
]
]
}
] | [
{
"id": "1.0alpha7.train.441.ent0_0",
"type": "experimental-construct",
"text": [
"NR1/NR2A"
],
"offsets": [
[
200,
208
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.441.ent1_0",
"type": "protein",
"text": [
"calmodulin"
],
"offsets": [
[
65,
75
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "801"
},
{
"db_name": "hgnc",
"db_id": "CALM1"
},
{
"db_name": "uniprot",
"db_id": "P0DP23"
}
]
},
{
"id": "1.0alpha7.train.441.ent2_1",
"type": "protein",
"text": [
"calmodulin"
],
"offsets": [
[
162,
172
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "801"
},
{
"db_name": "hgnc",
"db_id": "CALM1"
},
{
"db_name": "uniprot",
"db_id": "P0DP23"
}
]
},
{
"id": "1.0alpha7.train.441.ent3_2",
"type": "protein",
"text": [
"calmodulin"
],
"offsets": [
[
263,
273
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "801"
},
{
"db_name": "hgnc",
"db_id": "CALM1"
},
{
"db_name": "uniprot",
"db_id": "P0DP23"
}
]
},
{
"id": "1.0alpha7.train.441.ent4_0",
"type": "protein",
"text": [
"NR2A"
],
"offsets": [
[
204,
208
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2903"
},
{
"db_name": "hgnc",
"db_id": "GRIN2A"
},
{
"db_name": "uniprot",
"db_id": "Q12879"
}
]
},
{
"id": "1.0alpha7.train.441.ent5_0",
"type": "peptide",
"text": [
"CBP"
],
"offsets": [
[
190,
193
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.441.ent6_0",
"type": "peptide",
"text": [
"calmodulin binding peptide"
],
"offsets": [
[
162,
188
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.441.ent7_0",
"type": "process",
"text": [
"CDI"
],
"offsets": [
[
24,
27
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.441.ent8_0",
"type": "cell",
"text": [
"HEK 293"
],
"offsets": [
[
220,
227
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.441.ent9_0",
"type": "protein-complex",
"text": [
"NMDA receptor"
],
"offsets": [
[
88,
101
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.441.ent10_0",
"type": "protein",
"text": [
"NR1"
],
"offsets": [
[
200,
203
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2902"
},
{
"db_name": "hgnc",
"db_id": "GRIN1"
},
{
"db_name": "uniprot",
"db_id": "Q05586"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.441.coref0",
"entity_ids": [
"1.0alpha7.train.441.ent0_0"
]
},
{
"id": "1.0alpha7.train.441.coref1",
"entity_ids": [
"1.0alpha7.train.441.ent1_0",
"1.0alpha7.train.441.ent2_1",
"1.0alpha7.train.441.ent3_2"
]
},
{
"id": "1.0alpha7.train.441.coref2",
"entity_ids": [
"1.0alpha7.train.441.ent4_0"
]
},
{
"id": "1.0alpha7.train.441.coref3",
"entity_ids": [
"1.0alpha7.train.441.ent5_0",
"1.0alpha7.train.441.ent6_0"
]
},
{
"id": "1.0alpha7.train.441.coref4",
"entity_ids": [
"1.0alpha7.train.441.ent7_0"
]
},
{
"id": "1.0alpha7.train.441.coref5",
"entity_ids": [
"1.0alpha7.train.441.ent8_0"
]
},
{
"id": "1.0alpha7.train.441.coref6",
"entity_ids": [
"1.0alpha7.train.441.ent9_0"
]
},
{
"id": "1.0alpha7.train.441.coref7",
"entity_ids": [
"1.0alpha7.train.441.ent10_0"
]
}
] | [
{
"id": "1.0alpha7.train.441.rel0s1.0alpha7.train.441.ent1_0.o1.0alpha7.train.441.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.441.ent1_0",
"arg2_id": "1.0alpha7.train.441.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.441.rel0s1.0alpha7.train.441.ent1_0.o1.0alpha7.train.441.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.441.ent1_0",
"arg2_id": "1.0alpha7.train.441.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.441.rel0s1.0alpha7.train.441.ent2_1.o1.0alpha7.train.441.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.441.ent2_1",
"arg2_id": "1.0alpha7.train.441.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.441.rel0s1.0alpha7.train.441.ent2_1.o1.0alpha7.train.441.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.441.ent2_1",
"arg2_id": "1.0alpha7.train.441.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.441.rel0s1.0alpha7.train.441.ent3_2.o1.0alpha7.train.441.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.441.ent3_2",
"arg2_id": "1.0alpha7.train.441.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.441.rel0s1.0alpha7.train.441.ent3_2.o1.0alpha7.train.441.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.441.ent3_2",
"arg2_id": "1.0alpha7.train.441.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.442 | 1352390 | [
{
"id": "1.0alpha7.train.442.sent",
"type": "sentence",
"text": [
"This phosphorylation is crucial for Shc binding to Grb2 and MT-induced transformation."
],
"offsets": [
[
0,
89
]
]
}
] | [
{
"id": "1.0alpha7.train.442.ent0_0",
"type": "protein",
"text": [
"MT"
],
"offsets": [
[
63,
65
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.442.ent1_0",
"type": "protein",
"text": [
"Shc"
],
"offsets": [
[
37,
40
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6464"
},
{
"db_name": "hgnc",
"db_id": "SHC1"
},
{
"db_name": "uniprot",
"db_id": "P29353"
}
]
},
{
"id": "1.0alpha7.train.442.ent2_0",
"type": "protein",
"text": [
"Grb2"
],
"offsets": [
[
53,
57
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2885"
},
{
"db_name": "hgnc",
"db_id": "GRB2"
},
{
"db_name": "uniprot",
"db_id": "P62993"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.442.coref0",
"entity_ids": [
"1.0alpha7.train.442.ent0_0"
]
},
{
"id": "1.0alpha7.train.442.coref1",
"entity_ids": [
"1.0alpha7.train.442.ent1_0"
]
},
{
"id": "1.0alpha7.train.442.coref2",
"entity_ids": [
"1.0alpha7.train.442.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.442.rel0s1.0alpha7.train.442.ent1_0.o1.0alpha7.train.442.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.442.ent1_0",
"arg2_id": "1.0alpha7.train.442.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.443 | 5927999 | [
{
"id": "1.0alpha7.train.443.sent",
"type": "sentence",
"text": [
" The PH domain, which binds PI(4,5) P2 ( 14, 15), and an amino acid stretch upstream of PH domain, which can insert into the lipid bilayer ( 16), help the protein to anchor at the membrane. "
],
"offsets": [
[
0,
194
]
]
}
] | [
{
"id": "1.0alpha7.train.443.ent0_0",
"type": "protein-domain",
"text": [
"PH"
],
"offsets": [
[
6,
8
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.443.ent1_1",
"type": "protein-domain",
"text": [
"PH"
],
"offsets": [
[
91,
93
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.443.ent2_0",
"type": "chemical",
"text": [
"PI(4,5) P2"
],
"offsets": [
[
29,
39
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "44251424"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.443.coref0",
"entity_ids": [
"1.0alpha7.train.443.ent0_0",
"1.0alpha7.train.443.ent1_1"
]
},
{
"id": "1.0alpha7.train.443.coref1",
"entity_ids": [
"1.0alpha7.train.443.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.443.rel0s1.0alpha7.train.443.ent0_0.o1.0alpha7.train.443.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.443.ent0_0",
"arg2_id": "1.0alpha7.train.443.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.443.rel0s1.0alpha7.train.443.ent1_1.o1.0alpha7.train.443.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.443.ent1_1",
"arg2_id": "1.0alpha7.train.443.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.444 | 3472848 | [
{
"id": "1.0alpha7.train.444.sent",
"type": "sentence",
"text": [
"Procaspase-9 without cytochrome c had no effect on dATP binding to Apaf-1."
],
"offsets": [
[
0,
77
]
]
}
] | [
{
"id": "1.0alpha7.train.444.ent0_0",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
70,
76
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.444.ent1_0",
"type": "protein",
"text": [
"cytochrome c"
],
"offsets": [
[
22,
34
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "54205"
},
{
"db_name": "hgnc",
"db_id": "CYCS"
},
{
"db_name": "uniprot",
"db_id": "P99999"
}
]
},
{
"id": "1.0alpha7.train.444.ent2_0",
"type": "protein",
"text": [
"Procaspase-9"
],
"offsets": [
[
0,
12
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "842"
},
{
"db_name": "hgnc",
"db_id": "CASP9"
},
{
"db_name": "uniprot",
"db_id": "P55211"
}
]
},
{
"id": "1.0alpha7.train.444.ent3_0",
"type": "chemical",
"text": [
"dATP"
],
"offsets": [
[
53,
57
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "15993"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.444.coref0",
"entity_ids": [
"1.0alpha7.train.444.ent0_0"
]
},
{
"id": "1.0alpha7.train.444.coref1",
"entity_ids": [
"1.0alpha7.train.444.ent1_0"
]
},
{
"id": "1.0alpha7.train.444.coref2",
"entity_ids": [
"1.0alpha7.train.444.ent2_0"
]
},
{
"id": "1.0alpha7.train.444.coref3",
"entity_ids": [
"1.0alpha7.train.444.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.444.rel0s1.0alpha7.train.444.ent0_0.o1.0alpha7.train.444.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.444.ent0_0",
"arg2_id": "1.0alpha7.train.444.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.445 | 22779231 | [
{
"id": "1.0alpha7.train.445.sent",
"type": "sentence",
"text": [
"Boundary elements that have been well studied in Drosophila include the specialized chromatin sequences (scs and scs՛) flanking the hsp70 genes, Fab-7, Fab-8 and Mcp elements from the Bithorax Complex, and the suppressor of hairy-wing (su(Hw)) binding sites located within the gypsy transposon (reviewed in Bell et al., 2001)."
],
"offsets": [
[
0,
326
]
]
}
] | [
{
"id": "1.0alpha7.train.445.ent0_0",
"type": "gene",
"text": [
"Fab-7"
],
"offsets": [
[
145,
150
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent1_0",
"type": "DNA",
"text": [
"scs՛"
],
"offsets": [
[
113,
117
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent2_0",
"type": "gene",
"text": [
"Fab-8"
],
"offsets": [
[
152,
157
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent3_0",
"type": "protein-complex",
"text": [
"Bithorax Complex"
],
"offsets": [
[
184,
200
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent4_0",
"type": "gene",
"text": [
"hairy-wing"
],
"offsets": [
[
224,
234
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent5_0",
"type": "gene",
"text": [
"su(Hw)"
],
"offsets": [
[
236,
242
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent6_0",
"type": "DNA",
"text": [
"gypsy"
],
"offsets": [
[
277,
282
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent7_0",
"type": "gene",
"text": [
"hsp70"
],
"offsets": [
[
132,
137
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3308"
},
{
"db_name": "hgnc",
"db_id": "HSPA4"
}
]
},
{
"id": "1.0alpha7.train.445.ent8_0",
"type": "DNA",
"text": [
"scs"
],
"offsets": [
[
105,
108
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.445.ent9_0",
"type": "gene",
"text": [
"Mcp"
],
"offsets": [
[
162,
165
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.445.coref0",
"entity_ids": [
"1.0alpha7.train.445.ent0_0"
]
},
{
"id": "1.0alpha7.train.445.coref1",
"entity_ids": [
"1.0alpha7.train.445.ent1_0"
]
},
{
"id": "1.0alpha7.train.445.coref2",
"entity_ids": [
"1.0alpha7.train.445.ent2_0"
]
},
{
"id": "1.0alpha7.train.445.coref3",
"entity_ids": [
"1.0alpha7.train.445.ent3_0"
]
},
{
"id": "1.0alpha7.train.445.coref4",
"entity_ids": [
"1.0alpha7.train.445.ent4_0",
"1.0alpha7.train.445.ent5_0"
]
},
{
"id": "1.0alpha7.train.445.coref5",
"entity_ids": [
"1.0alpha7.train.445.ent6_0"
]
},
{
"id": "1.0alpha7.train.445.coref6",
"entity_ids": [
"1.0alpha7.train.445.ent7_0"
]
},
{
"id": "1.0alpha7.train.445.coref7",
"entity_ids": [
"1.0alpha7.train.445.ent8_0"
]
},
{
"id": "1.0alpha7.train.445.coref8",
"entity_ids": [
"1.0alpha7.train.445.ent9_0"
]
}
] | [
{
"id": "1.0alpha7.train.445.rel0s1.0alpha7.train.445.ent4_0.o1.0alpha7.train.445.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.445.ent4_0",
"arg2_id": "1.0alpha7.train.445.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.445.rel0s1.0alpha7.train.445.ent5_0.o1.0alpha7.train.445.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.445.ent5_0",
"arg2_id": "1.0alpha7.train.445.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.446 | 9712292 | [
{
"id": "1.0alpha7.train.446.sent",
"type": "sentence",
"text": [
"Plakoglobin binding by human Dsg3 (pemphigus vulgaris antigen) in keratinocytes requires the cadherin-like intracytoplasmic segment."
],
"offsets": [
[
0,
134
]
]
}
] | [
{
"id": "1.0alpha7.train.446.ent0_0",
"type": "protein-family",
"text": [
"cadherin"
],
"offsets": [
[
95,
103
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039808"
}
]
},
{
"id": "1.0alpha7.train.446.ent1_0",
"type": "protein",
"text": [
"Dsg3"
],
"offsets": [
[
30,
34
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1830"
},
{
"db_name": "hgnc",
"db_id": "DSG3"
},
{
"db_name": "uniprot",
"db_id": "P32926"
}
]
},
{
"id": "1.0alpha7.train.446.ent2_0",
"type": "protein",
"text": [
"pemphigus vulgaris antigen"
],
"offsets": [
[
36,
62
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1830"
},
{
"db_name": "hgnc",
"db_id": "DSG3"
},
{
"db_name": "uniprot",
"db_id": "P32926"
}
]
},
{
"id": "1.0alpha7.train.446.ent3_0",
"type": "protein-domain",
"text": [
"cadherin-like intracytoplasmic segment"
],
"offsets": [
[
95,
133
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.446.ent4_0",
"type": "protein",
"text": [
"Plakoglobin"
],
"offsets": [
[
0,
11
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3728"
},
{
"db_name": "hgnc",
"db_id": "JUP"
},
{
"db_name": "uniprot",
"db_id": "P14923"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.446.coref0",
"entity_ids": [
"1.0alpha7.train.446.ent0_0"
]
},
{
"id": "1.0alpha7.train.446.coref1",
"entity_ids": [
"1.0alpha7.train.446.ent1_0",
"1.0alpha7.train.446.ent2_0"
]
},
{
"id": "1.0alpha7.train.446.coref2",
"entity_ids": [
"1.0alpha7.train.446.ent3_0"
]
},
{
"id": "1.0alpha7.train.446.coref3",
"entity_ids": [
"1.0alpha7.train.446.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.446.rel0s1.0alpha7.train.446.ent1_0.o1.0alpha7.train.446.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.446.ent1_0",
"arg2_id": "1.0alpha7.train.446.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.446.rel0s1.0alpha7.train.446.ent2_0.o1.0alpha7.train.446.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.446.ent2_0",
"arg2_id": "1.0alpha7.train.446.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.447 | 9850644 | [
{
"id": "1.0alpha7.train.447.sent",
"type": "sentence",
"text": [
" N-cadherin also binds beta-catenin but stimulates tumor cell invasion ( Islam et al., 1996; Hazan et al., 2000). "
],
"offsets": [
[
0,
122
]
]
}
] | [
{
"id": "1.0alpha7.train.447.ent0_0",
"type": "protein-family",
"text": [
"N-cadherin"
],
"offsets": [
[
5,
15
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR030051"
}
]
},
{
"id": "1.0alpha7.train.447.ent1_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
28,
40
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.447.coref0",
"entity_ids": [
"1.0alpha7.train.447.ent0_0"
]
},
{
"id": "1.0alpha7.train.447.coref1",
"entity_ids": [
"1.0alpha7.train.447.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.447.rel0s1.0alpha7.train.447.ent0_0.o1.0alpha7.train.447.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.447.ent0_0",
"arg2_id": "1.0alpha7.train.447.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.448 | 9509122 | [
{
"id": "1.0alpha7.train.448.sent",
"type": "sentence",
"text": [
" (C, c) Binding of 125I-Tiam1 fragment to the spectrin binding domain of ankyrin. "
],
"offsets": [
[
0,
85
]
]
}
] | [
{
"id": "1.0alpha7.train.448.ent0_0",
"type": "protein",
"text": [
"Tiam1"
],
"offsets": [
[
24,
29
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7074"
},
{
"db_name": "hgnc",
"db_id": "TIAM1"
},
{
"db_name": "uniprot",
"db_id": "Q13009"
}
]
},
{
"id": "1.0alpha7.train.448.ent1_0",
"type": "experimental-construct",
"text": [
"125I-Tiam1"
],
"offsets": [
[
19,
29
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.448.ent2_0",
"type": "protein-family",
"text": [
"ankyrin"
],
"offsets": [
[
75,
82
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002110"
}
]
},
{
"id": "1.0alpha7.train.448.ent3_0",
"type": "protein-complex",
"text": [
"spectrin"
],
"offsets": [
[
47,
55
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002017"
}
]
},
{
"id": "1.0alpha7.train.448.ent4_0",
"type": "experiment-tag",
"text": [
"125I"
],
"offsets": [
[
19,
23
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.448.coref0",
"entity_ids": [
"1.0alpha7.train.448.ent0_0"
]
},
{
"id": "1.0alpha7.train.448.coref1",
"entity_ids": [
"1.0alpha7.train.448.ent1_0"
]
},
{
"id": "1.0alpha7.train.448.coref2",
"entity_ids": [
"1.0alpha7.train.448.ent2_0"
]
},
{
"id": "1.0alpha7.train.448.coref3",
"entity_ids": [
"1.0alpha7.train.448.ent3_0"
]
},
{
"id": "1.0alpha7.train.448.coref4",
"entity_ids": [
"1.0alpha7.train.448.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.448.rel0s1.0alpha7.train.448.ent1_0.o1.0alpha7.train.448.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.448.ent1_0",
"arg2_id": "1.0alpha7.train.448.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.448.rel1s1.0alpha7.train.448.ent2_0.o1.0alpha7.train.448.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.448.ent2_0",
"arg2_id": "1.0alpha7.train.448.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.449 | 16288445 | [
{
"id": "1.0alpha7.train.449.sent",
"type": "sentence",
"text": [
"The amphiphysin dimer also binds to clathrin (10, 11) and to the α-adaptin subunit of the plasma membrane clathrin adaptor AP-2 (9, 12) and thus may mediate recruitment of dynamin 1 and synaptojanin 1 to the site of clathrin-mediated endocytosis."
],
"offsets": [
[
0,
246
]
]
}
] | [
{
"id": "1.0alpha7.train.449.ent0_0",
"type": "protein",
"text": [
"α-adaptin"
],
"offsets": [
[
65,
74
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.449.ent1_0",
"type": "protein",
"text": [
"synaptojanin 1"
],
"offsets": [
[
186,
200
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8867"
},
{
"db_name": "hgnc",
"db_id": "SYNJ1"
},
{
"db_name": "uniprot",
"db_id": "J3KPK1"
}
]
},
{
"id": "1.0alpha7.train.449.ent2_0",
"type": "protein-complex",
"text": [
"clathrin"
],
"offsets": [
[
36,
44
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.449.ent3_1",
"type": "protein-complex",
"text": [
"clathrin"
],
"offsets": [
[
106,
114
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.449.ent4_2",
"type": "protein-complex",
"text": [
"clathrin"
],
"offsets": [
[
216,
224
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.449.ent5_0",
"type": "protein-complex",
"text": [
"AP-2"
],
"offsets": [
[
123,
127
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.449.ent6_0",
"type": "protein-family",
"text": [
"amphiphysin"
],
"offsets": [
[
4,
15
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR003005"
}
]
},
{
"id": "1.0alpha7.train.449.ent7_0",
"type": "protein",
"text": [
"dynamin 1"
],
"offsets": [
[
172,
181
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.449.ent8_0",
"type": "protein-complex",
"text": [
"amphiphysin dimer"
],
"offsets": [
[
4,
21
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.449.coref0",
"entity_ids": [
"1.0alpha7.train.449.ent0_0"
]
},
{
"id": "1.0alpha7.train.449.coref1",
"entity_ids": [
"1.0alpha7.train.449.ent1_0"
]
},
{
"id": "1.0alpha7.train.449.coref2",
"entity_ids": [
"1.0alpha7.train.449.ent2_0",
"1.0alpha7.train.449.ent3_1",
"1.0alpha7.train.449.ent4_2"
]
},
{
"id": "1.0alpha7.train.449.coref3",
"entity_ids": [
"1.0alpha7.train.449.ent5_0"
]
},
{
"id": "1.0alpha7.train.449.coref4",
"entity_ids": [
"1.0alpha7.train.449.ent6_0"
]
},
{
"id": "1.0alpha7.train.449.coref5",
"entity_ids": [
"1.0alpha7.train.449.ent7_0"
]
},
{
"id": "1.0alpha7.train.449.coref6",
"entity_ids": [
"1.0alpha7.train.449.ent8_0"
]
}
] | [
{
"id": "1.0alpha7.train.449.rel0s1.0alpha7.train.449.ent6_0.o1.0alpha7.train.449.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.449.ent6_0",
"arg2_id": "1.0alpha7.train.449.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.449.rel1s1.0alpha7.train.449.ent2_0.o1.0alpha7.train.449.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.449.ent2_0",
"arg2_id": "1.0alpha7.train.449.ent8_0",
"normalized": []
},
{
"id": "1.0alpha7.train.449.rel1s1.0alpha7.train.449.ent3_1.o1.0alpha7.train.449.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.449.ent3_1",
"arg2_id": "1.0alpha7.train.449.ent8_0",
"normalized": []
},
{
"id": "1.0alpha7.train.449.rel1s1.0alpha7.train.449.ent4_2.o1.0alpha7.train.449.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.449.ent4_2",
"arg2_id": "1.0alpha7.train.449.ent8_0",
"normalized": []
},
{
"id": "1.0alpha7.train.449.rel2s1.0alpha7.train.449.ent0_0.o1.0alpha7.train.449.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.449.ent0_0",
"arg2_id": "1.0alpha7.train.449.ent8_0",
"normalized": []
}
] |
1.0alpha7.train.450 | 13942918 | [
{
"id": "1.0alpha7.train.450.sent",
"type": "sentence",
"text": [
" Attempts to demonstrate that VacA directly associates with cholesterol were unsuccessful, suggesting that VacA may bind to DRM components other than (or in addition to) cholesterol. "
],
"offsets": [
[
0,
187
]
]
}
] | [
{
"id": "1.0alpha7.train.450.ent0_0",
"type": "protein-complex",
"text": [
"VacA"
],
"offsets": [
[
31,
35
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.450.ent1_1",
"type": "protein-complex",
"text": [
"VacA"
],
"offsets": [
[
109,
113
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.450.ent2_0",
"type": "organelle",
"text": [
"DRM"
],
"offsets": [
[
127,
130
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.450.ent3_0",
"type": "chemical",
"text": [
"cholesterol"
],
"offsets": [
[
61,
72
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.450.ent4_1",
"type": "chemical",
"text": [
"cholesterol"
],
"offsets": [
[
173,
184
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.450.coref0",
"entity_ids": [
"1.0alpha7.train.450.ent0_0",
"1.0alpha7.train.450.ent1_1"
]
},
{
"id": "1.0alpha7.train.450.coref1",
"entity_ids": [
"1.0alpha7.train.450.ent2_0"
]
},
{
"id": "1.0alpha7.train.450.coref2",
"entity_ids": [
"1.0alpha7.train.450.ent3_0",
"1.0alpha7.train.450.ent4_1"
]
}
] | [
{
"id": "1.0alpha7.train.450.rel0s1.0alpha7.train.450.ent0_0.o1.0alpha7.train.450.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.450.ent0_0",
"arg2_id": "1.0alpha7.train.450.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.450.rel0s1.0alpha7.train.450.ent0_0.o1.0alpha7.train.450.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.450.ent0_0",
"arg2_id": "1.0alpha7.train.450.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.450.rel0s1.0alpha7.train.450.ent1_1.o1.0alpha7.train.450.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.450.ent1_1",
"arg2_id": "1.0alpha7.train.450.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.450.rel0s1.0alpha7.train.450.ent1_1.o1.0alpha7.train.450.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.450.ent1_1",
"arg2_id": "1.0alpha7.train.450.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.450.rel1s1.0alpha7.train.450.ent0_0.o1.0alpha7.train.450.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.450.ent0_0",
"arg2_id": "1.0alpha7.train.450.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.450.rel1s1.0alpha7.train.450.ent1_1.o1.0alpha7.train.450.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.450.ent1_1",
"arg2_id": "1.0alpha7.train.450.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.451 | 25196685 | [
{
"id": "1.0alpha7.train.451.sent",
"type": "sentence",
"text": [
"We confirmed using a blot overlay assay that tomosyn directly bound to syntaxin-1a."
],
"offsets": [
[
0,
85
]
]
}
] | [
{
"id": "1.0alpha7.train.451.ent0_0",
"type": "protein",
"text": [
"syntaxin-1a"
],
"offsets": [
[
73,
84
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.451.ent1_0",
"type": "protein",
"text": [
"tomosyn"
],
"offsets": [
[
46,
53
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "134957"
},
{
"db_name": "hgnc",
"db_id": "STXBP5"
},
{
"db_name": "uniprot",
"db_id": "Q5T5C0"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.451.coref0",
"entity_ids": [
"1.0alpha7.train.451.ent0_0"
]
},
{
"id": "1.0alpha7.train.451.coref1",
"entity_ids": [
"1.0alpha7.train.451.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.451.rel0s1.0alpha7.train.451.ent0_0.o1.0alpha7.train.451.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.451.ent0_0",
"arg2_id": "1.0alpha7.train.451.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.452 | 2077598 | [
{
"id": "1.0alpha7.train.452.sent",
"type": "sentence",
"text": [
" Finally, DM stabilizes class II peptide binding sites against inactivation ( 25, 26). "
],
"offsets": [
[
0,
91
]
]
}
] | [
{
"id": "1.0alpha7.train.452.ent0_0",
"type": "protein",
"text": [
"DM"
],
"offsets": [
[
11,
13
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3108"
},
{
"db_name": "hgnc",
"db_id": "HLA-DMA"
},
{
"db_name": "uniprot",
"db_id": "Q5SP00"
}
]
},
{
"id": "1.0alpha7.train.452.ent1_0",
"type": "protein-family",
"text": [
"class II peptide"
],
"offsets": [
[
26,
42
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.452.coref0",
"entity_ids": [
"1.0alpha7.train.452.ent0_0"
]
},
{
"id": "1.0alpha7.train.452.coref1",
"entity_ids": [
"1.0alpha7.train.452.ent1_0"
]
}
] | [] |
1.0alpha7.train.453 | 899352 | [
{
"id": "1.0alpha7.train.453.sent",
"type": "sentence",
"text": [
"In addition, it was reported that a soluble form of CNTFRα (lacking the glycosylphosphatidylinositol linkage) can bind CNTF and activate gp130-LIFRβ-bearing cells (Taga et al., 1992; Davis et al., 1993b; Robledo et al., 1996)."
],
"offsets": [
[
0,
226
]
]
}
] | [
{
"id": "1.0alpha7.train.453.ent0_0",
"type": "protein",
"text": [
"CNTFRα"
],
"offsets": [
[
52,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1271"
},
{
"db_name": "hgnc",
"db_id": "CNTFR"
},
{
"db_name": "uniprot",
"db_id": "P26992"
}
]
},
{
"id": "1.0alpha7.train.453.ent1_0",
"type": "protein",
"text": [
"CNTF"
],
"offsets": [
[
119,
123
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1270"
},
{
"db_name": "hgnc",
"db_id": "CNTF"
},
{
"db_name": "uniprot",
"db_id": "P26441"
}
]
},
{
"id": "1.0alpha7.train.453.ent2_0",
"type": "protein",
"text": [
"LIFRβ"
],
"offsets": [
[
143,
148
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.453.ent3_0",
"type": "protein-complex",
"text": [
"gp130-LIFRβ"
],
"offsets": [
[
137,
148
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.453.ent4_0",
"type": "protein",
"text": [
"gp130"
],
"offsets": [
[
137,
142
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3572"
},
{
"db_name": "hgnc",
"db_id": "IL6ST"
},
{
"db_name": "uniprot",
"db_id": "P40189"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.453.coref0",
"entity_ids": [
"1.0alpha7.train.453.ent0_0"
]
},
{
"id": "1.0alpha7.train.453.coref1",
"entity_ids": [
"1.0alpha7.train.453.ent1_0"
]
},
{
"id": "1.0alpha7.train.453.coref2",
"entity_ids": [
"1.0alpha7.train.453.ent2_0"
]
},
{
"id": "1.0alpha7.train.453.coref3",
"entity_ids": [
"1.0alpha7.train.453.ent3_0"
]
},
{
"id": "1.0alpha7.train.453.coref4",
"entity_ids": [
"1.0alpha7.train.453.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.453.rel0s1.0alpha7.train.453.ent2_0.o1.0alpha7.train.453.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.453.ent2_0",
"arg2_id": "1.0alpha7.train.453.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.453.rel1s1.0alpha7.train.453.ent0_0.o1.0alpha7.train.453.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.453.ent0_0",
"arg2_id": "1.0alpha7.train.453.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.454 | 18858557 | [
{
"id": "1.0alpha7.train.454.sent",
"type": "sentence",
"text": [
" Therefore, projectin might not bind CaMKII to serve as its substrate. "
],
"offsets": [
[
0,
74
]
]
}
] | [
{
"id": "1.0alpha7.train.454.ent0_0",
"type": "protein",
"text": [
"CaMKII"
],
"offsets": [
[
39,
45
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "818"
},
{
"db_name": "hgnc",
"db_id": "CAMK2G"
},
{
"db_name": "uniprot",
"db_id": "Q13555"
}
]
},
{
"id": "1.0alpha7.train.454.ent1_0",
"type": "protein",
"text": [
"projectin"
],
"offsets": [
[
13,
22
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O76281"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.454.coref0",
"entity_ids": [
"1.0alpha7.train.454.ent0_0"
]
},
{
"id": "1.0alpha7.train.454.coref1",
"entity_ids": [
"1.0alpha7.train.454.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.454.rel0s1.0alpha7.train.454.ent0_0.o1.0alpha7.train.454.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.454.ent0_0",
"arg2_id": "1.0alpha7.train.454.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.455 | 9737637 | [
{
"id": "1.0alpha7.train.455.sent",
"type": "sentence",
"text": [
"It is not clear at present whether the binding of ERM proteins to CD43 and ICAM-2 (and to as yet unidentified ERM membrane-binding partners) in vivo is also regulated by the Rho signaling pathway."
],
"offsets": [
[
0,
203
]
]
}
] | [
{
"id": "1.0alpha7.train.455.ent0_0",
"type": "process",
"text": [
"Rho signaling pathway"
],
"offsets": [
[
181,
202
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.455.ent1_0",
"type": "protein",
"text": [
"CD43"
],
"offsets": [
[
69,
73
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6693"
},
{
"db_name": "hgnc",
"db_id": "SPN"
},
{
"db_name": "uniprot",
"db_id": "P16150"
}
]
},
{
"id": "1.0alpha7.train.455.ent2_0",
"type": "protein-family",
"text": [
"Rho"
],
"offsets": [
[
181,
184
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004665"
}
]
},
{
"id": "1.0alpha7.train.455.ent3_0",
"type": "protein",
"text": [
"ICAM-2"
],
"offsets": [
[
79,
85
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3384"
},
{
"db_name": "hgnc",
"db_id": "ICAM2"
},
{
"db_name": "uniprot",
"db_id": "P13598"
}
]
},
{
"id": "1.0alpha7.train.455.ent4_0",
"type": "protein-family",
"text": [
"ERM"
],
"offsets": [
[
52,
55
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000798"
}
]
},
{
"id": "1.0alpha7.train.455.ent5_1",
"type": "protein-family",
"text": [
"ERM"
],
"offsets": [
[
115,
118
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000798"
}
]
},
{
"id": "1.0alpha7.train.455.ent6_0",
"type": "protein-family",
"text": [
"ERM proteins"
],
"offsets": [
[
52,
64
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000798"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.455.coref0",
"entity_ids": [
"1.0alpha7.train.455.ent0_0"
]
},
{
"id": "1.0alpha7.train.455.coref1",
"entity_ids": [
"1.0alpha7.train.455.ent1_0"
]
},
{
"id": "1.0alpha7.train.455.coref2",
"entity_ids": [
"1.0alpha7.train.455.ent2_0"
]
},
{
"id": "1.0alpha7.train.455.coref3",
"entity_ids": [
"1.0alpha7.train.455.ent3_0"
]
},
{
"id": "1.0alpha7.train.455.coref4",
"entity_ids": [
"1.0alpha7.train.455.ent4_0",
"1.0alpha7.train.455.ent5_1"
]
},
{
"id": "1.0alpha7.train.455.coref5",
"entity_ids": [
"1.0alpha7.train.455.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.455.rel0s1.0alpha7.train.455.ent1_0.o1.0alpha7.train.455.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.455.ent1_0",
"arg2_id": "1.0alpha7.train.455.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.455.rel0s1.0alpha7.train.455.ent1_0.o1.0alpha7.train.455.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.455.ent1_0",
"arg2_id": "1.0alpha7.train.455.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.455.rel1s1.0alpha7.train.455.ent3_0.o1.0alpha7.train.455.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.455.ent3_0",
"arg2_id": "1.0alpha7.train.455.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.455.rel1s1.0alpha7.train.455.ent3_0.o1.0alpha7.train.455.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.455.ent3_0",
"arg2_id": "1.0alpha7.train.455.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.456 | 5539444 | [
{
"id": "1.0alpha7.train.456.sent",
"type": "sentence",
"text": [
"Oxidative stress stimulates binding of Sp1 and Sp3 to the VEGF-A promoter."
],
"offsets": [
[
0,
78
]
]
}
] | [
{
"id": "1.0alpha7.train.456.ent0_0",
"type": "protein",
"text": [
"VEGF-A"
],
"offsets": [
[
62,
68
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7422"
},
{
"db_name": "hgnc",
"db_id": "VEGFA"
},
{
"db_name": "uniprot",
"db_id": "P15692"
}
]
},
{
"id": "1.0alpha7.train.456.ent1_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
40,
43
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.456.ent2_0",
"type": "protein",
"text": [
"Sp3"
],
"offsets": [
[
49,
52
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6670"
},
{
"db_name": "hgnc",
"db_id": "SP3"
},
{
"db_name": "uniprot",
"db_id": "Q02447"
}
]
},
{
"id": "1.0alpha7.train.456.ent3_0",
"type": "DNA",
"text": [
"VEGF-A promoter"
],
"offsets": [
[
62,
77
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.456.coref0",
"entity_ids": [
"1.0alpha7.train.456.ent0_0"
]
},
{
"id": "1.0alpha7.train.456.coref1",
"entity_ids": [
"1.0alpha7.train.456.ent1_0"
]
},
{
"id": "1.0alpha7.train.456.coref2",
"entity_ids": [
"1.0alpha7.train.456.ent2_0"
]
},
{
"id": "1.0alpha7.train.456.coref3",
"entity_ids": [
"1.0alpha7.train.456.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.456.rel0s1.0alpha7.train.456.ent1_0.o1.0alpha7.train.456.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.456.ent1_0",
"arg2_id": "1.0alpha7.train.456.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.456.rel1s1.0alpha7.train.456.ent2_0.o1.0alpha7.train.456.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.456.ent2_0",
"arg2_id": "1.0alpha7.train.456.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.457 | 15373513 | [
{
"id": "1.0alpha7.train.457.sent",
"type": "sentence",
"text": [
"This argues for a function of U2AF35 in addition to assisting U2AF65 binding."
],
"offsets": [
[
0,
79
]
]
}
] | [
{
"id": "1.0alpha7.train.457.ent0_0",
"type": "protein",
"text": [
"U2AF65"
],
"offsets": [
[
64,
70
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "11338"
},
{
"db_name": "hgnc",
"db_id": "U2AF2"
},
{
"db_name": "uniprot",
"db_id": "P26368"
}
]
},
{
"id": "1.0alpha7.train.457.ent1_0",
"type": "protein",
"text": [
"U2AF35"
],
"offsets": [
[
31,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7307"
},
{
"db_name": "hgnc",
"db_id": "U2AF1"
},
{
"db_name": "uniprot",
"db_id": "Q01081"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.457.coref0",
"entity_ids": [
"1.0alpha7.train.457.ent0_0"
]
},
{
"id": "1.0alpha7.train.457.coref1",
"entity_ids": [
"1.0alpha7.train.457.ent1_0"
]
}
] | [] |
1.0alpha7.train.458 | 25325723 | [
{
"id": "1.0alpha7.train.458.sent",
"type": "sentence",
"text": [
" All the fusion proteins that bound to calmodulin contained the N-terminal 32 residues, while those proteins that lacked these residues failed to associate with calmodulin (Figure 2A) . "
],
"offsets": [
[
0,
192
]
]
}
] | [
{
"id": "1.0alpha7.train.458.ent0_0",
"type": "protein",
"text": [
"calmodulin"
],
"offsets": [
[
41,
51
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "801"
},
{
"db_name": "hgnc",
"db_id": "CALM1"
},
{
"db_name": "uniprot",
"db_id": "P0DP23"
}
]
},
{
"id": "1.0alpha7.train.458.ent1_1",
"type": "protein",
"text": [
"calmodulin"
],
"offsets": [
[
164,
174
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "801"
},
{
"db_name": "hgnc",
"db_id": "CALM1"
},
{
"db_name": "uniprot",
"db_id": "P0DP23"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.458.coref0",
"entity_ids": [
"1.0alpha7.train.458.ent0_0",
"1.0alpha7.train.458.ent1_1"
]
}
] | [] |
1.0alpha7.train.459 | 8963181 | [
{
"id": "1.0alpha7.train.459.sent",
"type": "sentence",
"text": [
"These observations support a mechanism in which GBP binding to Xgsk-3 prevents substrate phosphorylation."
],
"offsets": [
[
0,
109
]
]
}
] | [
{
"id": "1.0alpha7.train.459.ent0_0",
"type": "protein-family",
"text": [
"GBP"
],
"offsets": [
[
50,
53
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR015894"
}
]
},
{
"id": "1.0alpha7.train.459.ent1_0",
"type": "protein-complex",
"text": [
"Xgsk-3"
],
"offsets": [
[
66,
72
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.459.coref0",
"entity_ids": [
"1.0alpha7.train.459.ent0_0"
]
},
{
"id": "1.0alpha7.train.459.coref1",
"entity_ids": [
"1.0alpha7.train.459.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.459.rel0s1.0alpha7.train.459.ent0_0.o1.0alpha7.train.459.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.459.ent0_0",
"arg2_id": "1.0alpha7.train.459.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.460 | 15941453 | [
{
"id": "1.0alpha7.train.460.sent",
"type": "sentence",
"text": [
" ( Rho-associated coiled-coil-containing protein kinase) are activated by the GTP-bound form of Rho ( 31, 42, 50). "
],
"offsets": [
[
0,
120
]
]
}
] | [
{
"id": "1.0alpha7.train.460.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
79,
82
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.460.ent1_0",
"type": "protein",
"text": [
"Rho-associated coiled-coil-containing protein kinase"
],
"offsets": [
[
3,
55
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.460.ent2_0",
"type": "protein",
"text": [
"GTP-bound form of Rho"
],
"offsets": [
[
79,
101
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.460.ent3_0",
"type": "protein-family",
"text": [
"Rho"
],
"offsets": [
[
3,
6
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004665"
}
]
},
{
"id": "1.0alpha7.train.460.ent4_1",
"type": "protein-family",
"text": [
"Rho"
],
"offsets": [
[
98,
101
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004665"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.460.coref0",
"entity_ids": [
"1.0alpha7.train.460.ent0_0"
]
},
{
"id": "1.0alpha7.train.460.coref1",
"entity_ids": [
"1.0alpha7.train.460.ent1_0"
]
},
{
"id": "1.0alpha7.train.460.coref2",
"entity_ids": [
"1.0alpha7.train.460.ent2_0"
]
},
{
"id": "1.0alpha7.train.460.coref3",
"entity_ids": [
"1.0alpha7.train.460.ent3_0",
"1.0alpha7.train.460.ent4_1"
]
}
] | [
{
"id": "1.0alpha7.train.460.rel0s1.0alpha7.train.460.ent0_0.o1.0alpha7.train.460.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.460.ent0_0",
"arg2_id": "1.0alpha7.train.460.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.460.rel0s1.0alpha7.train.460.ent0_0.o1.0alpha7.train.460.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.460.ent0_0",
"arg2_id": "1.0alpha7.train.460.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.461 | 3392894 | [
{
"id": "1.0alpha7.train.461.sent",
"type": "sentence",
"text": [
" Here we report that p202a binds c-Myc in vitro and in vivo, thereby inhibiting the binding of c-Myc to Max, as well as the transcriptional activity of c-Myc. "
],
"offsets": [
[
0,
167
]
]
}
] | [
{
"id": "1.0alpha7.train.461.ent0_0",
"type": "protein",
"text": [
"c-Myc"
],
"offsets": [
[
35,
40
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4609"
},
{
"db_name": "hgnc",
"db_id": "MYC"
},
{
"db_name": "uniprot",
"db_id": "P01106"
}
]
},
{
"id": "1.0alpha7.train.461.ent1_1",
"type": "protein",
"text": [
"c-Myc"
],
"offsets": [
[
100,
105
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4609"
},
{
"db_name": "hgnc",
"db_id": "MYC"
},
{
"db_name": "uniprot",
"db_id": "P01106"
}
]
},
{
"id": "1.0alpha7.train.461.ent2_2",
"type": "protein",
"text": [
"c-Myc"
],
"offsets": [
[
159,
164
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4609"
},
{
"db_name": "hgnc",
"db_id": "MYC"
},
{
"db_name": "uniprot",
"db_id": "P01106"
}
]
},
{
"id": "1.0alpha7.train.461.ent3_0",
"type": "protein",
"text": [
"Max"
],
"offsets": [
[
110,
113
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4149"
},
{
"db_name": "hgnc",
"db_id": "MAX"
},
{
"db_name": "uniprot",
"db_id": "P61244"
}
]
},
{
"id": "1.0alpha7.train.461.ent4_0",
"type": "protein",
"text": [
"p202a"
],
"offsets": [
[
22,
27
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.461.coref0",
"entity_ids": [
"1.0alpha7.train.461.ent0_0",
"1.0alpha7.train.461.ent1_1",
"1.0alpha7.train.461.ent2_2"
]
},
{
"id": "1.0alpha7.train.461.coref1",
"entity_ids": [
"1.0alpha7.train.461.ent3_0"
]
},
{
"id": "1.0alpha7.train.461.coref2",
"entity_ids": [
"1.0alpha7.train.461.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.461.rel0s1.0alpha7.train.461.ent0_0.o1.0alpha7.train.461.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.461.ent0_0",
"arg2_id": "1.0alpha7.train.461.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.461.rel0s1.0alpha7.train.461.ent1_1.o1.0alpha7.train.461.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.461.ent1_1",
"arg2_id": "1.0alpha7.train.461.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.461.rel0s1.0alpha7.train.461.ent2_2.o1.0alpha7.train.461.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.461.ent2_2",
"arg2_id": "1.0alpha7.train.461.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.461.rel1s1.0alpha7.train.461.ent0_0.o1.0alpha7.train.461.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.461.ent0_0",
"arg2_id": "1.0alpha7.train.461.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.461.rel1s1.0alpha7.train.461.ent1_1.o1.0alpha7.train.461.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.461.ent1_1",
"arg2_id": "1.0alpha7.train.461.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.461.rel1s1.0alpha7.train.461.ent2_2.o1.0alpha7.train.461.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.461.ent2_2",
"arg2_id": "1.0alpha7.train.461.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.462 | 23330713 | [
{
"id": "1.0alpha7.train.462.sent",
"type": "sentence",
"text": [
" So far, we have found no evidence that the intramolecular SH3-GK interaction prevents binding of GKAP to the GK domain, but other GK-binding proteins like BEGAIN remain to be examined. "
],
"offsets": [
[
0,
192
]
]
}
] | [
{
"id": "1.0alpha7.train.462.ent0_0",
"type": "protein",
"text": [
"BEGAIN"
],
"offsets": [
[
161,
167
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "57596"
},
{
"db_name": "hgnc",
"db_id": "BEGAIN"
}
]
},
{
"id": "1.0alpha7.train.462.ent1_0",
"type": "protein-domain",
"text": [
"SH3"
],
"offsets": [
[
60,
63
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001452"
}
]
},
{
"id": "1.0alpha7.train.462.ent2_0",
"type": "protein-domain",
"text": [
"GK"
],
"offsets": [
[
64,
66
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.462.ent3_1",
"type": "protein-domain",
"text": [
"GK"
],
"offsets": [
[
113,
115
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.462.ent4_2",
"type": "protein-domain",
"text": [
"GK"
],
"offsets": [
[
135,
137
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.462.ent5_0",
"type": "protein",
"text": [
"GKAP"
],
"offsets": [
[
100,
104
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9229"
},
{
"db_name": "hgnc",
"db_id": "DLGAP1"
},
{
"db_name": "uniprot",
"db_id": "O14490"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.462.coref0",
"entity_ids": [
"1.0alpha7.train.462.ent0_0"
]
},
{
"id": "1.0alpha7.train.462.coref1",
"entity_ids": [
"1.0alpha7.train.462.ent1_0"
]
},
{
"id": "1.0alpha7.train.462.coref2",
"entity_ids": [
"1.0alpha7.train.462.ent2_0",
"1.0alpha7.train.462.ent3_1",
"1.0alpha7.train.462.ent4_2"
]
},
{
"id": "1.0alpha7.train.462.coref3",
"entity_ids": [
"1.0alpha7.train.462.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.462.rel0s1.0alpha7.train.462.ent1_0.o1.0alpha7.train.462.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.462.ent1_0",
"arg2_id": "1.0alpha7.train.462.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.462.rel0s1.0alpha7.train.462.ent1_0.o1.0alpha7.train.462.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.462.ent1_0",
"arg2_id": "1.0alpha7.train.462.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.462.rel0s1.0alpha7.train.462.ent1_0.o1.0alpha7.train.462.ent4_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.462.ent1_0",
"arg2_id": "1.0alpha7.train.462.ent4_2",
"normalized": []
},
{
"id": "1.0alpha7.train.462.rel1s1.0alpha7.train.462.ent2_0.o1.0alpha7.train.462.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.462.ent2_0",
"arg2_id": "1.0alpha7.train.462.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.462.rel1s1.0alpha7.train.462.ent3_1.o1.0alpha7.train.462.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.462.ent3_1",
"arg2_id": "1.0alpha7.train.462.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.462.rel1s1.0alpha7.train.462.ent4_2.o1.0alpha7.train.462.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.462.ent4_2",
"arg2_id": "1.0alpha7.train.462.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.463 | 1631394 | [
{
"id": "1.0alpha7.train.463.sent",
"type": "sentence",
"text": [
" Two models (Fig. 5) are proposed to explain the phenomenon that once Ku has bound to one DNA molecule, another DNA molecule can only compete for Ku if its ends are complementary to those of the first DNA molecule. "
],
"offsets": [
[
0,
220
]
]
}
] | [
{
"id": "1.0alpha7.train.463.ent0_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
93,
96
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.463.ent1_1",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
115,
118
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.463.ent2_2",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
205,
208
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.463.ent3_0",
"type": "protein-complex",
"text": [
"Ku"
],
"offsets": [
[
72,
74
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.463.ent4_1",
"type": "protein-complex",
"text": [
"Ku"
],
"offsets": [
[
150,
152
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.463.coref0",
"entity_ids": [
"1.0alpha7.train.463.ent0_0",
"1.0alpha7.train.463.ent1_1",
"1.0alpha7.train.463.ent2_2"
]
},
{
"id": "1.0alpha7.train.463.coref1",
"entity_ids": [
"1.0alpha7.train.463.ent3_0",
"1.0alpha7.train.463.ent4_1"
]
}
] | [
{
"id": "1.0alpha7.train.463.rel0s1.0alpha7.train.463.ent0_0.o1.0alpha7.train.463.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.463.ent0_0",
"arg2_id": "1.0alpha7.train.463.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.463.rel0s1.0alpha7.train.463.ent0_0.o1.0alpha7.train.463.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.463.ent0_0",
"arg2_id": "1.0alpha7.train.463.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.463.rel0s1.0alpha7.train.463.ent1_1.o1.0alpha7.train.463.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.463.ent1_1",
"arg2_id": "1.0alpha7.train.463.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.463.rel0s1.0alpha7.train.463.ent1_1.o1.0alpha7.train.463.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.463.ent1_1",
"arg2_id": "1.0alpha7.train.463.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.463.rel0s1.0alpha7.train.463.ent2_2.o1.0alpha7.train.463.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.463.ent2_2",
"arg2_id": "1.0alpha7.train.463.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.463.rel0s1.0alpha7.train.463.ent2_2.o1.0alpha7.train.463.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.463.ent2_2",
"arg2_id": "1.0alpha7.train.463.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.464 | 1876014 | [
{
"id": "1.0alpha7.train.464.sent",
"type": "sentence",
"text": [
"These proteins are responsible for cadherin binding to the actin cytoskeleton and possibly for intracellular signaling ( 39)."
],
"offsets": [
[
0,
127
]
]
}
] | [
{
"id": "1.0alpha7.train.464.ent0_0",
"type": "protein-family",
"text": [
"cadherin"
],
"offsets": [
[
36,
44
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039808"
}
]
},
{
"id": "1.0alpha7.train.464.ent1_0",
"type": "organelle",
"text": [
"actin cytoskeleton"
],
"offsets": [
[
61,
79
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.464.ent2_0",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
61,
66
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.464.coref0",
"entity_ids": [
"1.0alpha7.train.464.ent0_0"
]
},
{
"id": "1.0alpha7.train.464.coref1",
"entity_ids": [
"1.0alpha7.train.464.ent1_0"
]
},
{
"id": "1.0alpha7.train.464.coref2",
"entity_ids": [
"1.0alpha7.train.464.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.464.rel0s1.0alpha7.train.464.ent0_0.o1.0alpha7.train.464.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.464.ent0_0",
"arg2_id": "1.0alpha7.train.464.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.465 | 12543870 | [
{
"id": "1.0alpha7.train.465.sent",
"type": "sentence",
"text": [
"Mad2 binds and inhibits Cdc20 in vitro (Fang et al. 1998a ; Hwang et al. 1998 ; Kallio et al. 1998 Kim ; et al. 1998 )."
],
"offsets": [
[
0,
125
]
]
}
] | [
{
"id": "1.0alpha7.train.465.ent0_0",
"type": "protein",
"text": [
"Mad2"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4085"
},
{
"db_name": "hgnc",
"db_id": "MAD2L1"
},
{
"db_name": "uniprot",
"db_id": "Q13257"
}
]
},
{
"id": "1.0alpha7.train.465.ent1_0",
"type": "protein",
"text": [
"Cdc20"
],
"offsets": [
[
25,
30
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "991"
},
{
"db_name": "hgnc",
"db_id": "CDC20"
},
{
"db_name": "uniprot",
"db_id": "Q12834"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.465.coref0",
"entity_ids": [
"1.0alpha7.train.465.ent0_0"
]
},
{
"id": "1.0alpha7.train.465.coref1",
"entity_ids": [
"1.0alpha7.train.465.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.465.rel0s1.0alpha7.train.465.ent0_0.o1.0alpha7.train.465.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.465.ent0_0",
"arg2_id": "1.0alpha7.train.465.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.466 | 24889319 | [
{
"id": "1.0alpha7.train.466.sent",
"type": "sentence",
"text": [
"Several proteins have been isolated as putative Rho effectors on the basis of their selective interaction with the GTP-bound form of Rho."
],
"offsets": [
[
0,
140
]
]
}
] | [
{
"id": "1.0alpha7.train.466.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
117,
120
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.466.ent1_0",
"type": "protein",
"text": [
"GTP-bound form of Rho"
],
"offsets": [
[
117,
139
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.466.ent2_0",
"type": "protein-family",
"text": [
"Rho"
],
"offsets": [
[
49,
52
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004665"
}
]
},
{
"id": "1.0alpha7.train.466.ent3_1",
"type": "protein-family",
"text": [
"Rho"
],
"offsets": [
[
136,
139
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004665"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.466.coref0",
"entity_ids": [
"1.0alpha7.train.466.ent0_0"
]
},
{
"id": "1.0alpha7.train.466.coref1",
"entity_ids": [
"1.0alpha7.train.466.ent1_0"
]
},
{
"id": "1.0alpha7.train.466.coref2",
"entity_ids": [
"1.0alpha7.train.466.ent2_0",
"1.0alpha7.train.466.ent3_1"
]
}
] | [
{
"id": "1.0alpha7.train.466.rel0s1.0alpha7.train.466.ent0_0.o1.0alpha7.train.466.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.466.ent0_0",
"arg2_id": "1.0alpha7.train.466.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.466.rel0s1.0alpha7.train.466.ent0_0.o1.0alpha7.train.466.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.466.ent0_0",
"arg2_id": "1.0alpha7.train.466.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.467 | 19847791 | [
{
"id": "1.0alpha7.train.467.sent",
"type": "sentence",
"text": [
" ( C) This PIC binds the Ad origin of DNA replication (the 5' attached TP was omitted for simplification), most likely in a irregular, bent DNA structure. "
],
"offsets": [
[
0,
158
]
]
}
] | [
{
"id": "1.0alpha7.train.467.ent0_0",
"type": "protein-complex",
"text": [
"PIC"
],
"offsets": [
[
12,
15
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.467.ent1_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
39,
42
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.467.ent2_1",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
142,
145
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.467.ent3_0",
"type": "cell",
"text": [
"Ad"
],
"offsets": [
[
26,
28
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.467.ent4_0",
"type": "protein",
"text": [
"TP"
],
"offsets": [
[
73,
75
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.467.coref0",
"entity_ids": [
"1.0alpha7.train.467.ent0_0"
]
},
{
"id": "1.0alpha7.train.467.coref1",
"entity_ids": [
"1.0alpha7.train.467.ent1_0",
"1.0alpha7.train.467.ent2_1"
]
},
{
"id": "1.0alpha7.train.467.coref2",
"entity_ids": [
"1.0alpha7.train.467.ent3_0"
]
},
{
"id": "1.0alpha7.train.467.coref3",
"entity_ids": [
"1.0alpha7.train.467.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.467.rel0s1.0alpha7.train.467.ent0_0.o1.0alpha7.train.467.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.467.ent0_0",
"arg2_id": "1.0alpha7.train.467.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.467.rel0s1.0alpha7.train.467.ent0_0.o1.0alpha7.train.467.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.467.ent0_0",
"arg2_id": "1.0alpha7.train.467.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.468 | 9631609 | [
{
"id": "1.0alpha7.train.468.sent",
"type": "sentence",
"text": [
"Indeed, recent data indicates that Bcl-xL can bind to the mammalian CED-4 homologue Apaf-1, at least under some conditions (Hu et al., 1998; Pan et al., 1998)."
],
"offsets": [
[
0,
159
]
]
}
] | [
{
"id": "1.0alpha7.train.468.ent0_0",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
84,
90
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.468.ent1_0",
"type": "protein",
"text": [
"CED-4"
],
"offsets": [
[
68,
73
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.468.ent2_0",
"type": "protein",
"text": [
"Bcl-xL"
],
"offsets": [
[
35,
41
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "598"
},
{
"db_name": "hgnc",
"db_id": "BCL2L1"
},
{
"db_name": "uniprot",
"db_id": "Q07817"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.468.coref0",
"entity_ids": [
"1.0alpha7.train.468.ent0_0",
"1.0alpha7.train.468.ent1_0"
]
},
{
"id": "1.0alpha7.train.468.coref1",
"entity_ids": [
"1.0alpha7.train.468.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.468.rel0s1.0alpha7.train.468.ent0_0.o1.0alpha7.train.468.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.468.ent0_0",
"arg2_id": "1.0alpha7.train.468.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.468.rel0s1.0alpha7.train.468.ent1_0.o1.0alpha7.train.468.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.468.ent1_0",
"arg2_id": "1.0alpha7.train.468.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.469 | 4110078 | [
{
"id": "1.0alpha7.train.469.sent",
"type": "sentence",
"text": [
"The cadherin-bound form of beta-catenin is anchored at the plasma membrane ( 4)."
],
"offsets": [
[
0,
82
]
]
}
] | [
{
"id": "1.0alpha7.train.469.ent0_0",
"type": "protein-family",
"text": [
"cadherin"
],
"offsets": [
[
5,
13
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039808"
}
]
},
{
"id": "1.0alpha7.train.469.ent1_0",
"type": "protein-family",
"text": [
"beta-catenin"
],
"offsets": [
[
29,
41
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR013284"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.469.coref0",
"entity_ids": [
"1.0alpha7.train.469.ent0_0"
]
},
{
"id": "1.0alpha7.train.469.coref1",
"entity_ids": [
"1.0alpha7.train.469.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.469.rel0s1.0alpha7.train.469.ent0_0.o1.0alpha7.train.469.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.469.ent0_0",
"arg2_id": "1.0alpha7.train.469.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.470 | 19227767 | [
{
"id": "1.0alpha7.train.470.sent",
"type": "sentence",
"text": [
"The initial steps in formation of the pre-initiation complex - binding of TFIID and TFIIA - are likely to be important determinants of this dynamic equilibrium."
],
"offsets": [
[
0,
160
]
]
}
] | [
{
"id": "1.0alpha7.train.470.ent0_0",
"type": "protein-complex",
"text": [
"pre-initiation complex"
],
"offsets": [
[
38,
60
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.470.ent1_0",
"type": "protein",
"text": [
"TFIIA"
],
"offsets": [
[
84,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2957"
},
{
"db_name": "hgnc",
"db_id": "GTF2A1"
},
{
"db_name": "uniprot",
"db_id": "P52655"
}
]
},
{
"id": "1.0alpha7.train.470.ent2_0",
"type": "protein-complex",
"text": [
"TFIID"
],
"offsets": [
[
74,
79
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.470.coref0",
"entity_ids": [
"1.0alpha7.train.470.ent0_0"
]
},
{
"id": "1.0alpha7.train.470.coref1",
"entity_ids": [
"1.0alpha7.train.470.ent1_0"
]
},
{
"id": "1.0alpha7.train.470.coref2",
"entity_ids": [
"1.0alpha7.train.470.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.470.rel0s1.0alpha7.train.470.ent1_0.o1.0alpha7.train.470.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.470.ent1_0",
"arg2_id": "1.0alpha7.train.470.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.471 | 6933611 | [
{
"id": "1.0alpha7.train.471.sent",
"type": "sentence",
"text": [
" Although SREBPs are capable of binding E-boxes with high affinity in vitro ( 26, 30), sterol regulation of all carefully examined promoters so far is mediated through SREBP binding to SRE elements and not E-boxes ( 4, 6-10, 27-30). "
],
"offsets": [
[
0,
241
]
]
}
] | [
{
"id": "1.0alpha7.train.471.ent0_0",
"type": "DNA",
"text": [
"SRE elements"
],
"offsets": [
[
190,
202
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.471.ent1_0",
"type": "DNA",
"text": [
"E-boxes"
],
"offsets": [
[
41,
48
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.471.ent2_1",
"type": "DNA",
"text": [
"E-boxes"
],
"offsets": [
[
211,
218
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.471.ent3_0",
"type": "protein",
"text": [
"SREBP"
],
"offsets": [
[
172,
177
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6720"
},
{
"db_name": "hgnc",
"db_id": "SREBF1"
},
{
"db_name": "uniprot",
"db_id": "P36956"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.471.coref0",
"entity_ids": [
"1.0alpha7.train.471.ent0_0"
]
},
{
"id": "1.0alpha7.train.471.coref1",
"entity_ids": [
"1.0alpha7.train.471.ent1_0",
"1.0alpha7.train.471.ent2_1"
]
},
{
"id": "1.0alpha7.train.471.coref2",
"entity_ids": [
"1.0alpha7.train.471.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.471.rel0s1.0alpha7.train.471.ent1_0.o1.0alpha7.train.471.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.471.ent1_0",
"arg2_id": "1.0alpha7.train.471.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.471.rel0s1.0alpha7.train.471.ent2_1.o1.0alpha7.train.471.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.471.ent2_1",
"arg2_id": "1.0alpha7.train.471.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.471.rel1s1.0alpha7.train.471.ent0_0.o1.0alpha7.train.471.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.471.ent0_0",
"arg2_id": "1.0alpha7.train.471.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.472 | 22630949 | [
{
"id": "1.0alpha7.train.472.sent",
"type": "sentence",
"text": [
" At low pH does DM bind to the closed form of MHCII, prying it open, or does DM simply bind to and stabilize the open form of MHCII induced spontaneously by the shift to low pH? "
],
"offsets": [
[
0,
185
]
]
}
] | [
{
"id": "1.0alpha7.train.472.ent0_0",
"type": "protein-family",
"text": [
"DM"
],
"offsets": [
[
17,
19
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.472.ent1_1",
"type": "protein-family",
"text": [
"DM"
],
"offsets": [
[
82,
84
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.472.ent2_0",
"type": "protein-family",
"text": [
"MHCII"
],
"offsets": [
[
48,
53
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.472.ent3_1",
"type": "protein-family",
"text": [
"MHCII"
],
"offsets": [
[
132,
137
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.472.coref0",
"entity_ids": [
"1.0alpha7.train.472.ent0_0",
"1.0alpha7.train.472.ent1_1"
]
},
{
"id": "1.0alpha7.train.472.coref1",
"entity_ids": [
"1.0alpha7.train.472.ent2_0",
"1.0alpha7.train.472.ent3_1"
]
}
] | [
{
"id": "1.0alpha7.train.472.rel0s1.0alpha7.train.472.ent0_0.o1.0alpha7.train.472.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.472.ent0_0",
"arg2_id": "1.0alpha7.train.472.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.472.rel0s1.0alpha7.train.472.ent0_0.o1.0alpha7.train.472.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.472.ent0_0",
"arg2_id": "1.0alpha7.train.472.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.472.rel0s1.0alpha7.train.472.ent1_1.o1.0alpha7.train.472.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.472.ent1_1",
"arg2_id": "1.0alpha7.train.472.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.472.rel0s1.0alpha7.train.472.ent1_1.o1.0alpha7.train.472.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.472.ent1_1",
"arg2_id": "1.0alpha7.train.472.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.473 | 20761608 | [
{
"id": "1.0alpha7.train.473.sent",
"type": "sentence",
"text": [
"Although VEGF binds both VEGFR-1 and VEGFR-2, only binding to VEGFR-2 generates mitogenic signal in ECs."
],
"offsets": [
[
0,
104
]
]
}
] | [
{
"id": "1.0alpha7.train.473.ent0_0",
"type": "cell",
"text": [
"ECs"
],
"offsets": [
[
100,
103
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.473.ent1_0",
"type": "protein",
"text": [
"VEGFR-2"
],
"offsets": [
[
37,
44
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3791"
},
{
"db_name": "hgnc",
"db_id": "KDR"
},
{
"db_name": "uniprot",
"db_id": "P35968"
}
]
},
{
"id": "1.0alpha7.train.473.ent2_1",
"type": "protein",
"text": [
"VEGFR-2"
],
"offsets": [
[
62,
69
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3791"
},
{
"db_name": "hgnc",
"db_id": "KDR"
},
{
"db_name": "uniprot",
"db_id": "P35968"
}
]
},
{
"id": "1.0alpha7.train.473.ent3_0",
"type": "protein-family",
"text": [
"VEGF"
],
"offsets": [
[
9,
13
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR036841"
}
]
},
{
"id": "1.0alpha7.train.473.ent4_0",
"type": "protein",
"text": [
"VEGFR-1"
],
"offsets": [
[
25,
32
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2321"
},
{
"db_name": "hgnc",
"db_id": "FLT1"
},
{
"db_name": "uniprot",
"db_id": "P17948"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.473.coref0",
"entity_ids": [
"1.0alpha7.train.473.ent0_0"
]
},
{
"id": "1.0alpha7.train.473.coref1",
"entity_ids": [
"1.0alpha7.train.473.ent1_0",
"1.0alpha7.train.473.ent2_1"
]
},
{
"id": "1.0alpha7.train.473.coref2",
"entity_ids": [
"1.0alpha7.train.473.ent3_0"
]
},
{
"id": "1.0alpha7.train.473.coref3",
"entity_ids": [
"1.0alpha7.train.473.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.473.rel0s1.0alpha7.train.473.ent3_0.o1.0alpha7.train.473.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.473.ent3_0",
"arg2_id": "1.0alpha7.train.473.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.473.rel1s1.0alpha7.train.473.ent1_0.o1.0alpha7.train.473.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.473.ent1_0",
"arg2_id": "1.0alpha7.train.473.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.473.rel1s1.0alpha7.train.473.ent2_1.o1.0alpha7.train.473.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.473.ent2_1",
"arg2_id": "1.0alpha7.train.473.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.474 | 2616163 | [
{
"id": "1.0alpha7.train.474.sent",
"type": "sentence",
"text": [
" Thus, binding of USF to the DOR promoter sequence is more critical than that of Sp1/Sp3 in NS20Y cells. "
],
"offsets": [
[
0,
110
]
]
}
] | [
{
"id": "1.0alpha7.train.474.ent0_0",
"type": "protein-family",
"text": [
"USF"
],
"offsets": [
[
19,
22
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024097"
}
]
},
{
"id": "1.0alpha7.train.474.ent1_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
84,
87
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.474.ent2_0",
"type": "protein",
"text": [
"Sp3"
],
"offsets": [
[
88,
91
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6670"
},
{
"db_name": "hgnc",
"db_id": "SP3"
},
{
"db_name": "uniprot",
"db_id": "Q02447"
}
]
},
{
"id": "1.0alpha7.train.474.ent3_0",
"type": "cell",
"text": [
"NS20Y"
],
"offsets": [
[
96,
101
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.474.ent4_0",
"type": "DNA",
"text": [
"DOR promoter"
],
"offsets": [
[
31,
43
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.474.coref0",
"entity_ids": [
"1.0alpha7.train.474.ent0_0"
]
},
{
"id": "1.0alpha7.train.474.coref1",
"entity_ids": [
"1.0alpha7.train.474.ent1_0"
]
},
{
"id": "1.0alpha7.train.474.coref2",
"entity_ids": [
"1.0alpha7.train.474.ent2_0"
]
},
{
"id": "1.0alpha7.train.474.coref3",
"entity_ids": [
"1.0alpha7.train.474.ent3_0"
]
},
{
"id": "1.0alpha7.train.474.coref4",
"entity_ids": [
"1.0alpha7.train.474.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.474.rel0s1.0alpha7.train.474.ent0_0.o1.0alpha7.train.474.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.474.ent0_0",
"arg2_id": "1.0alpha7.train.474.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.474.rel1s1.0alpha7.train.474.ent2_0.o1.0alpha7.train.474.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.474.ent2_0",
"arg2_id": "1.0alpha7.train.474.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.474.rel2s1.0alpha7.train.474.ent1_0.o1.0alpha7.train.474.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.474.ent1_0",
"arg2_id": "1.0alpha7.train.474.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.475 | 23310905 | [
{
"id": "1.0alpha7.train.475.sent",
"type": "sentence",
"text": [
"In addition to our finding that CYC is present in at least a 200-fold molar excess relative to dCLK in head extracts (see Fig. 4), this contention is supported further by the observations that (1) at all times in a daily cycle essentially all of the dCLK is stably bound to CYC (see Fig. 5A), and (2) the temporal abundance profile of dCLK in immune complexes recovered with anti-CYC antibodies is very similar to that of dCLK present in head extracts (see Fig.3C,D)."
],
"offsets": [
[
0,
467
]
]
}
] | [
{
"id": "1.0alpha7.train.475.ent0_0",
"type": "protein",
"text": [
"CYC"
],
"offsets": [
[
32,
35
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61734"
}
]
},
{
"id": "1.0alpha7.train.475.ent1_1",
"type": "protein",
"text": [
"CYC"
],
"offsets": [
[
274,
277
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61734"
}
]
},
{
"id": "1.0alpha7.train.475.ent2_2",
"type": "protein",
"text": [
"CYC"
],
"offsets": [
[
380,
383
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61734"
}
]
},
{
"id": "1.0alpha7.train.475.ent3_0",
"type": "protein",
"text": [
"dCLK"
],
"offsets": [
[
95,
99
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61735"
}
]
},
{
"id": "1.0alpha7.train.475.ent4_1",
"type": "protein",
"text": [
"dCLK"
],
"offsets": [
[
250,
254
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61735"
}
]
},
{
"id": "1.0alpha7.train.475.ent5_2",
"type": "protein",
"text": [
"dCLK"
],
"offsets": [
[
335,
339
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61735"
}
]
},
{
"id": "1.0alpha7.train.475.ent6_3",
"type": "protein",
"text": [
"dCLK"
],
"offsets": [
[
422,
426
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O61735"
}
]
},
{
"id": "1.0alpha7.train.475.ent7_0",
"type": "reagent",
"text": [
"anti-CYC antibodies"
],
"offsets": [
[
375,
394
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.475.coref0",
"entity_ids": [
"1.0alpha7.train.475.ent0_0",
"1.0alpha7.train.475.ent1_1",
"1.0alpha7.train.475.ent2_2"
]
},
{
"id": "1.0alpha7.train.475.coref1",
"entity_ids": [
"1.0alpha7.train.475.ent3_0",
"1.0alpha7.train.475.ent4_1",
"1.0alpha7.train.475.ent5_2",
"1.0alpha7.train.475.ent6_3"
]
},
{
"id": "1.0alpha7.train.475.coref2",
"entity_ids": [
"1.0alpha7.train.475.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent0_0.o1.0alpha7.train.475.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent0_0",
"arg2_id": "1.0alpha7.train.475.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent0_0.o1.0alpha7.train.475.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent0_0",
"arg2_id": "1.0alpha7.train.475.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent0_0.o1.0alpha7.train.475.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent0_0",
"arg2_id": "1.0alpha7.train.475.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent0_0.o1.0alpha7.train.475.ent6_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent0_0",
"arg2_id": "1.0alpha7.train.475.ent6_3",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent1_1.o1.0alpha7.train.475.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent1_1",
"arg2_id": "1.0alpha7.train.475.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent1_1.o1.0alpha7.train.475.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent1_1",
"arg2_id": "1.0alpha7.train.475.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent1_1.o1.0alpha7.train.475.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent1_1",
"arg2_id": "1.0alpha7.train.475.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent1_1.o1.0alpha7.train.475.ent6_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent1_1",
"arg2_id": "1.0alpha7.train.475.ent6_3",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent2_2.o1.0alpha7.train.475.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent2_2",
"arg2_id": "1.0alpha7.train.475.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent2_2.o1.0alpha7.train.475.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent2_2",
"arg2_id": "1.0alpha7.train.475.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent2_2.o1.0alpha7.train.475.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent2_2",
"arg2_id": "1.0alpha7.train.475.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.475.rel0s1.0alpha7.train.475.ent2_2.o1.0alpha7.train.475.ent6_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.475.ent2_2",
"arg2_id": "1.0alpha7.train.475.ent6_3",
"normalized": []
}
] |
1.0alpha7.train.476 | 15771353 | [
{
"id": "1.0alpha7.train.476.sent",
"type": "sentence",
"text": [
" Since our data suggested that MEIS1 was bound to either HOXA9 and/or PBX1a in the presence of DNA, we wished to study the interactions between these molecules in the absence of a DNA target. "
],
"offsets": [
[
0,
196
]
]
}
] | [
{
"id": "1.0alpha7.train.476.ent0_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
98,
101
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.476.ent1_1",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
183,
186
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.476.ent2_0",
"type": "protein",
"text": [
"HOXA9"
],
"offsets": [
[
59,
64
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3205"
},
{
"db_name": "hgnc",
"db_id": "HOXA9"
},
{
"db_name": "uniprot",
"db_id": "P31269"
}
]
},
{
"id": "1.0alpha7.train.476.ent3_0",
"type": "protein",
"text": [
"MEIS1"
],
"offsets": [
[
32,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4211"
},
{
"db_name": "hgnc",
"db_id": "MEIS1"
},
{
"db_name": "uniprot",
"db_id": "U3KPR8"
}
]
},
{
"id": "1.0alpha7.train.476.ent4_0",
"type": "protein",
"text": [
"PBX1a"
],
"offsets": [
[
73,
78
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5087"
},
{
"db_name": "hgnc",
"db_id": "PBX1"
},
{
"db_name": "uniprot",
"db_id": "P40424"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.476.coref0",
"entity_ids": [
"1.0alpha7.train.476.ent0_0",
"1.0alpha7.train.476.ent1_1"
]
},
{
"id": "1.0alpha7.train.476.coref1",
"entity_ids": [
"1.0alpha7.train.476.ent2_0"
]
},
{
"id": "1.0alpha7.train.476.coref2",
"entity_ids": [
"1.0alpha7.train.476.ent3_0"
]
},
{
"id": "1.0alpha7.train.476.coref3",
"entity_ids": [
"1.0alpha7.train.476.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.476.rel0s1.0alpha7.train.476.ent2_0.o1.0alpha7.train.476.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.476.ent2_0",
"arg2_id": "1.0alpha7.train.476.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.476.rel1s1.0alpha7.train.476.ent3_0.o1.0alpha7.train.476.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.476.ent3_0",
"arg2_id": "1.0alpha7.train.476.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.477 | 5872668 | [
{
"id": "1.0alpha7.train.477.sent",
"type": "sentence",
"text": [
" As described by Kumar et al. ( 17), the crystal structure of CtBP bound to NAD+ supports the prediction that CtBP is structurally similar to 3-phosphoglycerate dehydrogenase. "
],
"offsets": [
[
0,
186
]
]
}
] | [
{
"id": "1.0alpha7.train.477.ent0_0",
"type": "chemical",
"text": [
"NAD+"
],
"offsets": [
[
83,
87
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "925"
}
]
},
{
"id": "1.0alpha7.train.477.ent1_0",
"type": "protein",
"text": [
"CtBP"
],
"offsets": [
[
69,
73
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q13363"
}
]
},
{
"id": "1.0alpha7.train.477.ent2_1",
"type": "protein",
"text": [
"CtBP"
],
"offsets": [
[
118,
122
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q13363"
}
]
},
{
"id": "1.0alpha7.train.477.ent3_0",
"type": "protein",
"text": [
"3-phosphoglycerate dehydrogenase"
],
"offsets": [
[
151,
183
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "26227"
},
{
"db_name": "hgnc",
"db_id": "PHGDH"
},
{
"db_name": "uniprot",
"db_id": "O43175"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.477.coref0",
"entity_ids": [
"1.0alpha7.train.477.ent0_0"
]
},
{
"id": "1.0alpha7.train.477.coref1",
"entity_ids": [
"1.0alpha7.train.477.ent1_0",
"1.0alpha7.train.477.ent2_1"
]
},
{
"id": "1.0alpha7.train.477.coref2",
"entity_ids": [
"1.0alpha7.train.477.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.477.rel0s1.0alpha7.train.477.ent0_0.o1.0alpha7.train.477.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.477.ent0_0",
"arg2_id": "1.0alpha7.train.477.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.477.rel0s1.0alpha7.train.477.ent0_0.o1.0alpha7.train.477.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.477.ent0_0",
"arg2_id": "1.0alpha7.train.477.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.478 | 2277874 | [
{
"id": "1.0alpha7.train.478.sent",
"type": "sentence",
"text": [
"The fact that deletion of domain 7 did not affect the inhibition of osteoclastogenesis (Fig. 2 A) but significantly decreased the binding of OCIF to heparin (Fig. 3) indicates that binding ability of OCIF to heparin does not correlate with its osteoclastogenesis inhibitory activity in vitro."
],
"offsets": [
[
0,
292
]
]
}
] | [
{
"id": "1.0alpha7.train.478.ent0_0",
"type": "protein",
"text": [
"OCIF"
],
"offsets": [
[
141,
145
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.478.ent1_1",
"type": "protein",
"text": [
"OCIF"
],
"offsets": [
[
200,
204
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.478.ent2_0",
"type": "chemical",
"text": [
"heparin"
],
"offsets": [
[
149,
156
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "772"
}
]
},
{
"id": "1.0alpha7.train.478.ent3_1",
"type": "chemical",
"text": [
"heparin"
],
"offsets": [
[
208,
215
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "772"
}
]
},
{
"id": "1.0alpha7.train.478.ent4_0",
"type": "protein-domain",
"text": [
"domain 7"
],
"offsets": [
[
26,
34
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.478.coref0",
"entity_ids": [
"1.0alpha7.train.478.ent0_0",
"1.0alpha7.train.478.ent1_1"
]
},
{
"id": "1.0alpha7.train.478.coref1",
"entity_ids": [
"1.0alpha7.train.478.ent2_0",
"1.0alpha7.train.478.ent3_1"
]
},
{
"id": "1.0alpha7.train.478.coref2",
"entity_ids": [
"1.0alpha7.train.478.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.478.rel0s1.0alpha7.train.478.ent0_0.o1.0alpha7.train.478.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.478.ent0_0",
"arg2_id": "1.0alpha7.train.478.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.478.rel0s1.0alpha7.train.478.ent0_0.o1.0alpha7.train.478.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.478.ent0_0",
"arg2_id": "1.0alpha7.train.478.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.478.rel0s1.0alpha7.train.478.ent1_1.o1.0alpha7.train.478.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.478.ent1_1",
"arg2_id": "1.0alpha7.train.478.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.478.rel0s1.0alpha7.train.478.ent1_1.o1.0alpha7.train.478.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.478.ent1_1",
"arg2_id": "1.0alpha7.train.478.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.479 | 864775 | [
{
"id": "1.0alpha7.train.479.sent",
"type": "sentence",
"text": [
" Since a peptide encompassing this region binds to collagen type I and inhibits APP-collagen type I binding in nanomolar concentrations, this region may comprise the major part of the collagen type I binding site of APP. "
],
"offsets": [
[
0,
229
]
]
}
] | [
{
"id": "1.0alpha7.train.479.ent0_0",
"type": "protein",
"text": [
"APP"
],
"offsets": [
[
84,
87
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "351"
},
{
"db_name": "hgnc",
"db_id": "APP"
}
]
},
{
"id": "1.0alpha7.train.479.ent1_1",
"type": "protein",
"text": [
"APP"
],
"offsets": [
[
223,
226
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "351"
},
{
"db_name": "hgnc",
"db_id": "APP"
}
]
},
{
"id": "1.0alpha7.train.479.ent2_0",
"type": "protein-complex",
"text": [
"collagen type I"
],
"offsets": [
[
53,
68
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.479.ent3_1",
"type": "protein-complex",
"text": [
"collagen type I"
],
"offsets": [
[
88,
103
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.479.ent4_2",
"type": "protein-complex",
"text": [
"collagen type I"
],
"offsets": [
[
190,
205
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.479.coref0",
"entity_ids": [
"1.0alpha7.train.479.ent0_0",
"1.0alpha7.train.479.ent1_1"
]
},
{
"id": "1.0alpha7.train.479.coref1",
"entity_ids": [
"1.0alpha7.train.479.ent2_0",
"1.0alpha7.train.479.ent3_1",
"1.0alpha7.train.479.ent4_2"
]
}
] | [
{
"id": "1.0alpha7.train.479.rel0s1.0alpha7.train.479.ent0_0.o1.0alpha7.train.479.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.479.ent0_0",
"arg2_id": "1.0alpha7.train.479.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.479.rel0s1.0alpha7.train.479.ent0_0.o1.0alpha7.train.479.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.479.ent0_0",
"arg2_id": "1.0alpha7.train.479.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.479.rel0s1.0alpha7.train.479.ent0_0.o1.0alpha7.train.479.ent4_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.479.ent0_0",
"arg2_id": "1.0alpha7.train.479.ent4_2",
"normalized": []
},
{
"id": "1.0alpha7.train.479.rel0s1.0alpha7.train.479.ent1_1.o1.0alpha7.train.479.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.479.ent1_1",
"arg2_id": "1.0alpha7.train.479.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.479.rel0s1.0alpha7.train.479.ent1_1.o1.0alpha7.train.479.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.479.ent1_1",
"arg2_id": "1.0alpha7.train.479.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.479.rel0s1.0alpha7.train.479.ent1_1.o1.0alpha7.train.479.ent4_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.479.ent1_1",
"arg2_id": "1.0alpha7.train.479.ent4_2",
"normalized": []
}
] |
1.0alpha7.train.480 | 15406437 | [
{
"id": "1.0alpha7.train.480.sent",
"type": "sentence",
"text": [
" Figure 5C shows that the binding of Rpb1 (the large subunit of RNA pol II) to both the GAL1 and GAL10 promoters increases with time after induction with galactose, reaching its maximum level at 60 min. "
],
"offsets": [
[
0,
212
]
]
}
] | [
{
"id": "1.0alpha7.train.480.ent0_0",
"type": "protein-complex",
"text": [
"RNA pol II"
],
"offsets": [
[
67,
77
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.480.ent1_0",
"type": "chemical",
"text": [
"galactose"
],
"offsets": [
[
162,
171
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "6036"
}
]
},
{
"id": "1.0alpha7.train.480.ent2_0",
"type": "protein",
"text": [
"Rpb1"
],
"offsets": [
[
39,
43
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.480.ent3_0",
"type": "DNA",
"text": [
"GAL10 promoters"
],
"offsets": [
[
104,
119
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.480.ent4_0",
"type": "gene",
"text": [
"GAL10"
],
"offsets": [
[
104,
109
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.480.ent5_0",
"type": "DNA",
"text": [
"GAL1"
],
"offsets": [
[
93,
97
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.480.coref0",
"entity_ids": [
"1.0alpha7.train.480.ent0_0"
]
},
{
"id": "1.0alpha7.train.480.coref1",
"entity_ids": [
"1.0alpha7.train.480.ent1_0"
]
},
{
"id": "1.0alpha7.train.480.coref2",
"entity_ids": [
"1.0alpha7.train.480.ent2_0"
]
},
{
"id": "1.0alpha7.train.480.coref3",
"entity_ids": [
"1.0alpha7.train.480.ent3_0"
]
},
{
"id": "1.0alpha7.train.480.coref4",
"entity_ids": [
"1.0alpha7.train.480.ent4_0"
]
},
{
"id": "1.0alpha7.train.480.coref5",
"entity_ids": [
"1.0alpha7.train.480.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.480.rel0s1.0alpha7.train.480.ent2_0.o1.0alpha7.train.480.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.480.ent2_0",
"arg2_id": "1.0alpha7.train.480.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.480.rel1s1.0alpha7.train.480.ent2_0.o1.0alpha7.train.480.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.480.ent2_0",
"arg2_id": "1.0alpha7.train.480.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.481 | 1986039 | [
{
"id": "1.0alpha7.train.481.sent",
"type": "sentence",
"text": [
"Binding of purified alpha-actinin to the beta1 cytoplasmic domain is shown in Fig. 1 B."
],
"offsets": [
[
0,
90
]
]
}
] | [
{
"id": "1.0alpha7.train.481.ent0_0",
"type": "protein-family",
"text": [
"alpha-actinin"
],
"offsets": [
[
21,
34
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR026921"
}
]
},
{
"id": "1.0alpha7.train.481.ent1_0",
"type": "protein-domain",
"text": [
"beta1 cytoplasmic domain"
],
"offsets": [
[
43,
67
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.481.ent2_0",
"type": "protein",
"text": [
"beta1"
],
"offsets": [
[
43,
48
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.481.coref0",
"entity_ids": [
"1.0alpha7.train.481.ent0_0"
]
},
{
"id": "1.0alpha7.train.481.coref1",
"entity_ids": [
"1.0alpha7.train.481.ent1_0"
]
},
{
"id": "1.0alpha7.train.481.coref2",
"entity_ids": [
"1.0alpha7.train.481.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.481.rel0s1.0alpha7.train.481.ent0_0.o1.0alpha7.train.481.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.481.ent0_0",
"arg2_id": "1.0alpha7.train.481.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.482 | 11069909 | [
{
"id": "1.0alpha7.train.482.sent",
"type": "sentence",
"text": [
"On binding of LPS to TLRs, specifically TLR2 and TLR4, via CD14, a number of molecules are recruited to the receptor to mediate NF-κB activation, which include the adaptor molecule MyD88, the protein kinase IRAK, and the adaptor molecule TRAF-6, thus forming the receptor complex [29], resulting in interaction of downstream molecules and the subsequent activation of NF-κB."
],
"offsets": [
[
0,
374
]
]
}
] | [
{
"id": "1.0alpha7.train.482.ent0_0",
"type": "protein",
"text": [
"IRAK"
],
"offsets": [
[
207,
211
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3654"
},
{
"db_name": "hgnc",
"db_id": "IRAK1"
},
{
"db_name": "uniprot",
"db_id": "P51617"
}
]
},
{
"id": "1.0alpha7.train.482.ent1_0",
"type": "protein-complex",
"text": [
"NF-κB"
],
"offsets": [
[
128,
133
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.482.ent2_1",
"type": "protein-complex",
"text": [
"NF-κB"
],
"offsets": [
[
368,
373
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.482.ent3_0",
"type": "chemical",
"text": [
"LPS"
],
"offsets": [
[
14,
17
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "53481794"
}
]
},
{
"id": "1.0alpha7.train.482.ent4_0",
"type": "protein-family",
"text": [
"TLRs"
],
"offsets": [
[
21,
25
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.482.ent5_0",
"type": "protein",
"text": [
"CD14"
],
"offsets": [
[
59,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "929"
},
{
"db_name": "hgnc",
"db_id": "CD14"
},
{
"db_name": "uniprot",
"db_id": "P08571"
}
]
},
{
"id": "1.0alpha7.train.482.ent6_0",
"type": "protein",
"text": [
"TRAF-6"
],
"offsets": [
[
238,
244
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7189"
},
{
"db_name": "hgnc",
"db_id": "TRAF6"
},
{
"db_name": "uniprot",
"db_id": "Q9Y4K3"
}
]
},
{
"id": "1.0alpha7.train.482.ent7_0",
"type": "protein",
"text": [
"MyD88"
],
"offsets": [
[
181,
186
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4615"
},
{
"db_name": "hgnc",
"db_id": "MYD88"
},
{
"db_name": "uniprot",
"db_id": "Q99836"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.482.coref0",
"entity_ids": [
"1.0alpha7.train.482.ent0_0"
]
},
{
"id": "1.0alpha7.train.482.coref1",
"entity_ids": [
"1.0alpha7.train.482.ent1_0",
"1.0alpha7.train.482.ent2_1"
]
},
{
"id": "1.0alpha7.train.482.coref2",
"entity_ids": [
"1.0alpha7.train.482.ent3_0"
]
},
{
"id": "1.0alpha7.train.482.coref3",
"entity_ids": [
"1.0alpha7.train.482.ent4_0"
]
},
{
"id": "1.0alpha7.train.482.coref4",
"entity_ids": [
"1.0alpha7.train.482.ent5_0"
]
},
{
"id": "1.0alpha7.train.482.coref5",
"entity_ids": [
"1.0alpha7.train.482.ent6_0"
]
},
{
"id": "1.0alpha7.train.482.coref6",
"entity_ids": [
"1.0alpha7.train.482.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.482.rel0s1.0alpha7.train.482.ent3_0.o1.0alpha7.train.482.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.482.ent3_0",
"arg2_id": "1.0alpha7.train.482.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.482.rel1s1.0alpha7.train.482.ent3_0.o1.0alpha7.train.482.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.482.ent3_0",
"arg2_id": "1.0alpha7.train.482.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.483 | 4311853 | [
{
"id": "1.0alpha7.train.483.sent",
"type": "sentence",
"text": [
" Interestingly, TDP-43 can bind a minimum number of six UG (or TG) single-stranded dinucleotide stretches, and binding affinity increases with the number of repeats. "
],
"offsets": [
[
0,
169
]
]
}
] | [
{
"id": "1.0alpha7.train.483.ent0_0",
"type": "DNA",
"text": [
"TG"
],
"offsets": [
[
65,
67
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.483.ent1_0",
"type": "DNA",
"text": [
"UG"
],
"offsets": [
[
58,
60
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.483.ent2_0",
"type": "DNA",
"text": [
"UG (or TG) single-stranded dinucleotide"
],
"offsets": [
[
58,
97
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.483.ent3_0",
"type": "protein",
"text": [
"TDP-43"
],
"offsets": [
[
17,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "23435"
},
{
"db_name": "hgnc",
"db_id": "TARDBP"
},
{
"db_name": "uniprot",
"db_id": "Q13148"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.483.coref0",
"entity_ids": [
"1.0alpha7.train.483.ent0_0"
]
},
{
"id": "1.0alpha7.train.483.coref1",
"entity_ids": [
"1.0alpha7.train.483.ent1_0"
]
},
{
"id": "1.0alpha7.train.483.coref2",
"entity_ids": [
"1.0alpha7.train.483.ent2_0"
]
},
{
"id": "1.0alpha7.train.483.coref3",
"entity_ids": [
"1.0alpha7.train.483.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.483.rel0s1.0alpha7.train.483.ent2_0.o1.0alpha7.train.483.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.483.ent2_0",
"arg2_id": "1.0alpha7.train.483.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.484 | 8909102 | [
{
"id": "1.0alpha7.train.484.sent",
"type": "sentence",
"text": [
" An N-terminal proline-rich sequence (PXXP) binds to Nck (Bokoch et al., 1996 ; Galisteo et al., 1996 ); a CRIB ( Cdc42/ Rac interactive binding) motif binds to GTP-bound forms of Cdc42 and Rac (Manser et al., 1994 ; Burbelo et al., 1995 ); and a proline-rich motif is constitutively bound to Pix, a guanine nucleotide exchange factor specific to Rac and Cdc42 (Manser et al., 1998 ). "
],
"offsets": [
[
0,
417
]
]
}
] | [
{
"id": "1.0alpha7.train.484.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
174,
177
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.484.ent1_0",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
131,
134
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
},
{
"id": "1.0alpha7.train.484.ent2_1",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
206,
209
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
},
{
"id": "1.0alpha7.train.484.ent3_2",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
374,
377
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
},
{
"id": "1.0alpha7.train.484.ent4_0",
"type": "protein",
"text": [
"GTP-bound forms of Cdc42"
],
"offsets": [
[
174,
200
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.484.ent5_0",
"type": "protein-motif",
"text": [
"Cdc42/ Rac interactive binding"
],
"offsets": [
[
124,
156
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.484.ent6_0",
"type": "protein-motif",
"text": [
"proline-rich motif"
],
"offsets": [
[
270,
288
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.484.ent7_0",
"type": "protein-motif",
"text": [
"CRIB"
],
"offsets": [
[
116,
120
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.484.ent8_0",
"type": "protein",
"text": [
"Pix"
],
"offsets": [
[
317,
320
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8874"
},
{
"db_name": "hgnc",
"db_id": "ARHGEF7"
},
{
"db_name": "uniprot",
"db_id": "Q14155"
}
]
},
{
"id": "1.0alpha7.train.484.ent9_0",
"type": "protein-family",
"text": [
"Nck"
],
"offsets": [
[
56,
59
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR017304"
}
]
},
{
"id": "1.0alpha7.train.484.ent10_0",
"type": "protein-region",
"text": [
"PXXP"
],
"offsets": [
[
40,
44
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.484.ent11_0",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
124,
129
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
},
{
"id": "1.0alpha7.train.484.ent12_1",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
195,
200
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
},
{
"id": "1.0alpha7.train.484.ent13_2",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
383,
388
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.484.coref0",
"entity_ids": [
"1.0alpha7.train.484.ent0_0"
]
},
{
"id": "1.0alpha7.train.484.coref1",
"entity_ids": [
"1.0alpha7.train.484.ent1_0",
"1.0alpha7.train.484.ent2_1",
"1.0alpha7.train.484.ent3_2"
]
},
{
"id": "1.0alpha7.train.484.coref2",
"entity_ids": [
"1.0alpha7.train.484.ent4_0"
]
},
{
"id": "1.0alpha7.train.484.coref3",
"entity_ids": [
"1.0alpha7.train.484.ent5_0"
]
},
{
"id": "1.0alpha7.train.484.coref4",
"entity_ids": [
"1.0alpha7.train.484.ent6_0"
]
},
{
"id": "1.0alpha7.train.484.coref5",
"entity_ids": [
"1.0alpha7.train.484.ent7_0"
]
},
{
"id": "1.0alpha7.train.484.coref6",
"entity_ids": [
"1.0alpha7.train.484.ent8_0"
]
},
{
"id": "1.0alpha7.train.484.coref7",
"entity_ids": [
"1.0alpha7.train.484.ent9_0"
]
},
{
"id": "1.0alpha7.train.484.coref8",
"entity_ids": [
"1.0alpha7.train.484.ent10_0"
]
},
{
"id": "1.0alpha7.train.484.coref9",
"entity_ids": [
"1.0alpha7.train.484.ent11_0",
"1.0alpha7.train.484.ent12_1",
"1.0alpha7.train.484.ent13_2"
]
}
] | [
{
"id": "1.0alpha7.train.484.rel0s1.0alpha7.train.484.ent9_0.o1.0alpha7.train.484.ent10_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent9_0",
"arg2_id": "1.0alpha7.train.484.ent10_0",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel1s1.0alpha7.train.484.ent7_0.o1.0alpha7.train.484.ent11_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent7_0",
"arg2_id": "1.0alpha7.train.484.ent11_0",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel1s1.0alpha7.train.484.ent7_0.o1.0alpha7.train.484.ent12_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent7_0",
"arg2_id": "1.0alpha7.train.484.ent12_1",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel1s1.0alpha7.train.484.ent7_0.o1.0alpha7.train.484.ent13_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent7_0",
"arg2_id": "1.0alpha7.train.484.ent13_2",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel2s1.0alpha7.train.484.ent1_0.o1.0alpha7.train.484.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent1_0",
"arg2_id": "1.0alpha7.train.484.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel2s1.0alpha7.train.484.ent2_1.o1.0alpha7.train.484.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent2_1",
"arg2_id": "1.0alpha7.train.484.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel2s1.0alpha7.train.484.ent3_2.o1.0alpha7.train.484.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent3_2",
"arg2_id": "1.0alpha7.train.484.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.484.rel3s1.0alpha7.train.484.ent6_0.o1.0alpha7.train.484.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.484.ent6_0",
"arg2_id": "1.0alpha7.train.484.ent8_0",
"normalized": []
}
] |
1.0alpha7.train.485 | 4879462 | [
{
"id": "1.0alpha7.train.485.sent",
"type": "sentence",
"text": [
" With high concentrations of Ubc9 and GR, Ubc9 binding to GR appears to be sufficient to permit Ubc9 to act independently of the GME. "
],
"offsets": [
[
0,
141
]
]
}
] | [
{
"id": "1.0alpha7.train.485.ent0_0",
"type": "protein",
"text": [
"Ubc9"
],
"offsets": [
[
30,
34
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7329"
},
{
"db_name": "hgnc",
"db_id": "UBE2I"
},
{
"db_name": "uniprot",
"db_id": "P63279"
}
]
},
{
"id": "1.0alpha7.train.485.ent1_1",
"type": "protein",
"text": [
"Ubc9"
],
"offsets": [
[
45,
49
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7329"
},
{
"db_name": "hgnc",
"db_id": "UBE2I"
},
{
"db_name": "uniprot",
"db_id": "P63279"
}
]
},
{
"id": "1.0alpha7.train.485.ent2_2",
"type": "protein",
"text": [
"Ubc9"
],
"offsets": [
[
101,
105
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7329"
},
{
"db_name": "hgnc",
"db_id": "UBE2I"
},
{
"db_name": "uniprot",
"db_id": "P63279"
}
]
},
{
"id": "1.0alpha7.train.485.ent3_0",
"type": "protein",
"text": [
"GR"
],
"offsets": [
[
40,
42
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2908"
},
{
"db_name": "hgnc",
"db_id": "NR3C1"
},
{
"db_name": "uniprot",
"db_id": "P04150"
}
]
},
{
"id": "1.0alpha7.train.485.ent4_1",
"type": "protein",
"text": [
"GR"
],
"offsets": [
[
62,
64
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2908"
},
{
"db_name": "hgnc",
"db_id": "NR3C1"
},
{
"db_name": "uniprot",
"db_id": "P04150"
}
]
},
{
"id": "1.0alpha7.train.485.ent5_0",
"type": "DNA",
"text": [
"GME"
],
"offsets": [
[
135,
138
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.485.coref0",
"entity_ids": [
"1.0alpha7.train.485.ent0_0",
"1.0alpha7.train.485.ent1_1",
"1.0alpha7.train.485.ent2_2"
]
},
{
"id": "1.0alpha7.train.485.coref1",
"entity_ids": [
"1.0alpha7.train.485.ent3_0",
"1.0alpha7.train.485.ent4_1"
]
},
{
"id": "1.0alpha7.train.485.coref2",
"entity_ids": [
"1.0alpha7.train.485.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.485.rel0s1.0alpha7.train.485.ent0_0.o1.0alpha7.train.485.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.485.ent0_0",
"arg2_id": "1.0alpha7.train.485.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.485.rel0s1.0alpha7.train.485.ent0_0.o1.0alpha7.train.485.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.485.ent0_0",
"arg2_id": "1.0alpha7.train.485.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.485.rel0s1.0alpha7.train.485.ent1_1.o1.0alpha7.train.485.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.485.ent1_1",
"arg2_id": "1.0alpha7.train.485.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.485.rel0s1.0alpha7.train.485.ent1_1.o1.0alpha7.train.485.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.485.ent1_1",
"arg2_id": "1.0alpha7.train.485.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.485.rel0s1.0alpha7.train.485.ent2_2.o1.0alpha7.train.485.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.485.ent2_2",
"arg2_id": "1.0alpha7.train.485.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.485.rel0s1.0alpha7.train.485.ent2_2.o1.0alpha7.train.485.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.485.ent2_2",
"arg2_id": "1.0alpha7.train.485.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.486 | 640037 | [
{
"id": "1.0alpha7.train.486.sent",
"type": "sentence",
"text": [
" Castanospermine partially blocked the binding of gp160 to calreticulin and calnexin, whereas 1-deoxynojirimycin had little inhibitory effect. "
],
"offsets": [
[
0,
148
]
]
}
] | [
{
"id": "1.0alpha7.train.486.ent0_0",
"type": "protein-family",
"text": [
"calnexin"
],
"offsets": [
[
80,
88
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001580"
}
]
},
{
"id": "1.0alpha7.train.486.ent1_0",
"type": "protein-complex",
"text": [
"gp160"
],
"offsets": [
[
51,
56
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.486.ent2_0",
"type": "chemical",
"text": [
"1-deoxynojirimycin"
],
"offsets": [
[
98,
116
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "29435"
}
]
},
{
"id": "1.0alpha7.train.486.ent3_0",
"type": "chemical",
"text": [
"Castanospermine"
],
"offsets": [
[
1,
16
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "54445"
}
]
},
{
"id": "1.0alpha7.train.486.ent4_0",
"type": "protein",
"text": [
"calreticulin"
],
"offsets": [
[
61,
73
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "811"
},
{
"db_name": "hgnc",
"db_id": "CALR"
},
{
"db_name": "uniprot",
"db_id": "P27797"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.486.coref0",
"entity_ids": [
"1.0alpha7.train.486.ent0_0"
]
},
{
"id": "1.0alpha7.train.486.coref1",
"entity_ids": [
"1.0alpha7.train.486.ent1_0"
]
},
{
"id": "1.0alpha7.train.486.coref2",
"entity_ids": [
"1.0alpha7.train.486.ent2_0"
]
},
{
"id": "1.0alpha7.train.486.coref3",
"entity_ids": [
"1.0alpha7.train.486.ent3_0"
]
},
{
"id": "1.0alpha7.train.486.coref4",
"entity_ids": [
"1.0alpha7.train.486.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.486.rel0s1.0alpha7.train.486.ent1_0.o1.0alpha7.train.486.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.486.ent1_0",
"arg2_id": "1.0alpha7.train.486.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.486.rel1s1.0alpha7.train.486.ent0_0.o1.0alpha7.train.486.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.486.ent0_0",
"arg2_id": "1.0alpha7.train.486.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.487 | 3405495 | [
{
"id": "1.0alpha7.train.487.sent",
"type": "sentence",
"text": [
" ( A), Annexin V binding by FACS analysis (apoptotic cells as a %-age of control) ( B), and DNA cleavage (laddering) ( C). "
],
"offsets": [
[
0,
126
]
]
}
] | [
{
"id": "1.0alpha7.train.487.ent0_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
94,
97
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.487.ent1_0",
"type": "assay",
"text": [
"FACS"
],
"offsets": [
[
30,
34
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.487.ent2_0",
"type": "protein",
"text": [
"Annexin V"
],
"offsets": [
[
8,
17
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "308"
},
{
"db_name": "hgnc",
"db_id": "ANXA5"
},
{
"db_name": "uniprot",
"db_id": "P08758"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.487.coref0",
"entity_ids": [
"1.0alpha7.train.487.ent0_0"
]
},
{
"id": "1.0alpha7.train.487.coref1",
"entity_ids": [
"1.0alpha7.train.487.ent1_0"
]
},
{
"id": "1.0alpha7.train.487.coref2",
"entity_ids": [
"1.0alpha7.train.487.ent2_0"
]
}
] | [] |
1.0alpha7.train.488 | 8909808 | [
{
"id": "1.0alpha7.train.488.sent",
"type": "sentence",
"text": [
"The ubiquitous expression of Tctex-1 suggests that it may bind to additional cytoplasmic dynein cargo molecules or receptors other than rhodopsin."
],
"offsets": [
[
0,
150
]
]
}
] | [
{
"id": "1.0alpha7.train.488.ent0_0",
"type": "protein-family",
"text": [
"dynein"
],
"offsets": [
[
92,
98
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR037177"
}
]
},
{
"id": "1.0alpha7.train.488.ent1_0",
"type": "protein-family",
"text": [
"rhodopsin"
],
"offsets": [
[
140,
149
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000732"
}
]
},
{
"id": "1.0alpha7.train.488.ent2_0",
"type": "protein",
"text": [
"Tctex-1"
],
"offsets": [
[
30,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6993"
},
{
"db_name": "hgnc",
"db_id": "DYNLT1"
},
{
"db_name": "uniprot",
"db_id": "P63172"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.488.coref0",
"entity_ids": [
"1.0alpha7.train.488.ent0_0"
]
},
{
"id": "1.0alpha7.train.488.coref1",
"entity_ids": [
"1.0alpha7.train.488.ent1_0"
]
},
{
"id": "1.0alpha7.train.488.coref2",
"entity_ids": [
"1.0alpha7.train.488.ent2_0"
]
}
] | [] |
1.0alpha7.train.489 | 3199964 | [
{
"id": "1.0alpha7.train.489.sent",
"type": "sentence",
"text": [
"We previously determined that the flanking A nucleotides of the AUUUA motifs in the TNFα ARE were essential for binding of TTP to the TNFα ARE (11)."
],
"offsets": [
[
0,
148
]
]
}
] | [
{
"id": "1.0alpha7.train.489.ent0_0",
"type": "protein",
"text": [
"TTP"
],
"offsets": [
[
123,
126
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.489.ent1_0",
"type": "RNA",
"text": [
"AUUUA"
],
"offsets": [
[
64,
69
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.489.ent2_0",
"type": "RNA",
"text": [
"ARE"
],
"offsets": [
[
89,
92
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.489.ent3_1",
"type": "RNA",
"text": [
"ARE"
],
"offsets": [
[
139,
142
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.489.ent4_0",
"type": "RNA",
"text": [
"TNFα ARE"
],
"offsets": [
[
84,
92
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.489.ent5_1",
"type": "RNA",
"text": [
"TNFα ARE"
],
"offsets": [
[
134,
142
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.489.ent6_0",
"type": "protein",
"text": [
"TNFα"
],
"offsets": [
[
84,
88
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7124"
},
{
"db_name": "hgnc",
"db_id": "TNF"
},
{
"db_name": "uniprot",
"db_id": "P01375"
}
]
},
{
"id": "1.0alpha7.train.489.ent7_1",
"type": "protein",
"text": [
"TNFα"
],
"offsets": [
[
134,
138
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7124"
},
{
"db_name": "hgnc",
"db_id": "TNF"
},
{
"db_name": "uniprot",
"db_id": "P01375"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.489.coref0",
"entity_ids": [
"1.0alpha7.train.489.ent0_0"
]
},
{
"id": "1.0alpha7.train.489.coref1",
"entity_ids": [
"1.0alpha7.train.489.ent1_0"
]
},
{
"id": "1.0alpha7.train.489.coref2",
"entity_ids": [
"1.0alpha7.train.489.ent2_0",
"1.0alpha7.train.489.ent3_1"
]
},
{
"id": "1.0alpha7.train.489.coref3",
"entity_ids": [
"1.0alpha7.train.489.ent4_0",
"1.0alpha7.train.489.ent5_1"
]
},
{
"id": "1.0alpha7.train.489.coref4",
"entity_ids": [
"1.0alpha7.train.489.ent6_0",
"1.0alpha7.train.489.ent7_1"
]
}
] | [
{
"id": "1.0alpha7.train.489.rel0s1.0alpha7.train.489.ent0_0.o1.0alpha7.train.489.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.489.ent0_0",
"arg2_id": "1.0alpha7.train.489.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.489.rel0s1.0alpha7.train.489.ent0_0.o1.0alpha7.train.489.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.489.ent0_0",
"arg2_id": "1.0alpha7.train.489.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.490 | 4890087 | [
{
"id": "1.0alpha7.train.490.sent",
"type": "sentence",
"text": [
"All of these results and our results are convergent with those of recent studies reporting that dynamin directly binds regulatory components of the actin cytoskeleton, such as profilin (26), proteins of the syndapin/pacsin/FAP52 family (27-29), and cortactin (30)."
],
"offsets": [
[
0,
264
]
]
}
] | [
{
"id": "1.0alpha7.train.490.ent0_0",
"type": "protein-family",
"text": [
"dynamin"
],
"offsets": [
[
96,
103
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR022812"
}
]
},
{
"id": "1.0alpha7.train.490.ent1_0",
"type": "protein-family",
"text": [
"profilin"
],
"offsets": [
[
176,
184
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005455"
}
]
},
{
"id": "1.0alpha7.train.490.ent2_0",
"type": "protein",
"text": [
"syndapin"
],
"offsets": [
[
207,
215
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "29993"
},
{
"db_name": "hgnc",
"db_id": "PACSIN1"
},
{
"db_name": "uniprot",
"db_id": "Q9BY11"
}
]
},
{
"id": "1.0alpha7.train.490.ent3_0",
"type": "protein",
"text": [
"pacsin"
],
"offsets": [
[
216,
222
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "29993"
},
{
"db_name": "hgnc",
"db_id": "PACSIN1"
},
{
"db_name": "uniprot",
"db_id": "Q9BY11"
}
]
},
{
"id": "1.0alpha7.train.490.ent4_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
148,
153
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.490.ent5_0",
"type": "protein",
"text": [
"cortactin"
],
"offsets": [
[
249,
258
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2017"
},
{
"db_name": "hgnc",
"db_id": "CTTN"
},
{
"db_name": "uniprot",
"db_id": "Q14247"
}
]
},
{
"id": "1.0alpha7.train.490.ent6_0",
"type": "organelle",
"text": [
"actin cytoskeleton"
],
"offsets": [
[
148,
166
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.490.ent7_0",
"type": "protein",
"text": [
"FAP52"
],
"offsets": [
[
223,
228
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.490.coref0",
"entity_ids": [
"1.0alpha7.train.490.ent0_0"
]
},
{
"id": "1.0alpha7.train.490.coref1",
"entity_ids": [
"1.0alpha7.train.490.ent1_0"
]
},
{
"id": "1.0alpha7.train.490.coref2",
"entity_ids": [
"1.0alpha7.train.490.ent2_0"
]
},
{
"id": "1.0alpha7.train.490.coref3",
"entity_ids": [
"1.0alpha7.train.490.ent3_0"
]
},
{
"id": "1.0alpha7.train.490.coref4",
"entity_ids": [
"1.0alpha7.train.490.ent4_0"
]
},
{
"id": "1.0alpha7.train.490.coref5",
"entity_ids": [
"1.0alpha7.train.490.ent5_0"
]
},
{
"id": "1.0alpha7.train.490.coref6",
"entity_ids": [
"1.0alpha7.train.490.ent6_0"
]
},
{
"id": "1.0alpha7.train.490.coref7",
"entity_ids": [
"1.0alpha7.train.490.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.490.rel0s1.0alpha7.train.490.ent0_0.o1.0alpha7.train.490.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.490.ent0_0",
"arg2_id": "1.0alpha7.train.490.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.490.rel1s1.0alpha7.train.490.ent0_0.o1.0alpha7.train.490.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.490.ent0_0",
"arg2_id": "1.0alpha7.train.490.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.490.rel2s1.0alpha7.train.490.ent0_0.o1.0alpha7.train.490.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.490.ent0_0",
"arg2_id": "1.0alpha7.train.490.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.490.rel3s1.0alpha7.train.490.ent0_0.o1.0alpha7.train.490.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.490.ent0_0",
"arg2_id": "1.0alpha7.train.490.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.490.rel4s1.0alpha7.train.490.ent0_0.o1.0alpha7.train.490.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.490.ent0_0",
"arg2_id": "1.0alpha7.train.490.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.491 | 24668074 | [
{
"id": "1.0alpha7.train.491.sent",
"type": "sentence",
"text": [
"The results show that insulin induces an approximate 2-fold increase in the amount of GTP bound Ras and Rheb (Figure 2A), with the fold increase in GTP bound Rheb being 1.8 ± 0.11 SEM, averaged over three independent experiments."
],
"offsets": [
[
0,
229
]
]
}
] | [
{
"id": "1.0alpha7.train.491.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
86,
89
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.491.ent1_1",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
148,
151
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.491.ent2_0",
"type": "protein",
"text": [
"Rheb"
],
"offsets": [
[
104,
108
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6009"
},
{
"db_name": "hgnc",
"db_id": "RHEB"
},
{
"db_name": "uniprot",
"db_id": "Q15382"
}
]
},
{
"id": "1.0alpha7.train.491.ent3_1",
"type": "protein",
"text": [
"Rheb"
],
"offsets": [
[
158,
162
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6009"
},
{
"db_name": "hgnc",
"db_id": "RHEB"
},
{
"db_name": "uniprot",
"db_id": "Q15382"
}
]
},
{
"id": "1.0alpha7.train.491.ent4_0",
"type": "protein",
"text": [
"insulin"
],
"offsets": [
[
22,
29
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3630"
},
{
"db_name": "hgnc",
"db_id": "INS"
},
{
"db_name": "uniprot",
"db_id": "P01308"
}
]
},
{
"id": "1.0alpha7.train.491.ent5_0",
"type": "protein-family",
"text": [
"Ras"
],
"offsets": [
[
96,
99
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR020849"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.491.coref0",
"entity_ids": [
"1.0alpha7.train.491.ent0_0",
"1.0alpha7.train.491.ent1_1"
]
},
{
"id": "1.0alpha7.train.491.coref1",
"entity_ids": [
"1.0alpha7.train.491.ent2_0",
"1.0alpha7.train.491.ent3_1"
]
},
{
"id": "1.0alpha7.train.491.coref2",
"entity_ids": [
"1.0alpha7.train.491.ent4_0"
]
},
{
"id": "1.0alpha7.train.491.coref3",
"entity_ids": [
"1.0alpha7.train.491.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.491.rel0s1.0alpha7.train.491.ent0_0.o1.0alpha7.train.491.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.491.ent0_0",
"arg2_id": "1.0alpha7.train.491.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.491.rel0s1.0alpha7.train.491.ent1_1.o1.0alpha7.train.491.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.491.ent1_1",
"arg2_id": "1.0alpha7.train.491.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.491.rel1s1.0alpha7.train.491.ent0_0.o1.0alpha7.train.491.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.491.ent0_0",
"arg2_id": "1.0alpha7.train.491.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.491.rel1s1.0alpha7.train.491.ent0_0.o1.0alpha7.train.491.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.491.ent0_0",
"arg2_id": "1.0alpha7.train.491.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.491.rel1s1.0alpha7.train.491.ent1_1.o1.0alpha7.train.491.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.491.ent1_1",
"arg2_id": "1.0alpha7.train.491.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.491.rel1s1.0alpha7.train.491.ent1_1.o1.0alpha7.train.491.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.491.ent1_1",
"arg2_id": "1.0alpha7.train.491.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.492 | 3806869 | [
{
"id": "1.0alpha7.train.492.sent",
"type": "sentence",
"text": [
" Here we report that SRF binds to another myogenic factor, TEF-1, that has been implicated in the regulation of a variety of cardiac muscle genes. "
],
"offsets": [
[
0,
152
]
]
}
] | [
{
"id": "1.0alpha7.train.492.ent0_0",
"type": "protein",
"text": [
"TEF-1"
],
"offsets": [
[
62,
67
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7003"
},
{
"db_name": "hgnc",
"db_id": "TEAD1"
},
{
"db_name": "uniprot",
"db_id": "P28347"
}
]
},
{
"id": "1.0alpha7.train.492.ent1_0",
"type": "protein",
"text": [
"SRF"
],
"offsets": [
[
22,
25
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6722"
},
{
"db_name": "hgnc",
"db_id": "SRF"
},
{
"db_name": "uniprot",
"db_id": "P11831"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.492.coref0",
"entity_ids": [
"1.0alpha7.train.492.ent0_0"
]
},
{
"id": "1.0alpha7.train.492.coref1",
"entity_ids": [
"1.0alpha7.train.492.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.492.rel0s1.0alpha7.train.492.ent0_0.o1.0alpha7.train.492.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.492.ent0_0",
"arg2_id": "1.0alpha7.train.492.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.493 | 4825807 | [
{
"id": "1.0alpha7.train.493.sent",
"type": "sentence",
"text": [
"MEP50 binds a subset of the Sm proteins."
],
"offsets": [
[
0,
42
]
]
}
] | [
{
"id": "1.0alpha7.train.493.ent0_0",
"type": "protein",
"text": [
"MEP50"
],
"offsets": [
[
0,
5
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "79084"
},
{
"db_name": "hgnc",
"db_id": "WDR77"
},
{
"db_name": "uniprot",
"db_id": "Q9BQA1"
}
]
},
{
"id": "1.0alpha7.train.493.ent1_0",
"type": "protein-family",
"text": [
"Sm"
],
"offsets": [
[
30,
32
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.493.coref0",
"entity_ids": [
"1.0alpha7.train.493.ent0_0"
]
},
{
"id": "1.0alpha7.train.493.coref1",
"entity_ids": [
"1.0alpha7.train.493.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.493.rel0s1.0alpha7.train.493.ent0_0.o1.0alpha7.train.493.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.493.ent0_0",
"arg2_id": "1.0alpha7.train.493.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.494 | 9485931 | [
{
"id": "1.0alpha7.train.494.sent",
"type": "sentence",
"text": [
"We find that the fourth repeat is necessary for the F-actin binding activity of cortactin and that the NTA region binds directly to the Arp2/3 complex."
],
"offsets": [
[
0,
155
]
]
}
] | [
{
"id": "1.0alpha7.train.494.ent0_0",
"type": "protein-region",
"text": [
"NTA"
],
"offsets": [
[
106,
109
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.494.ent1_0",
"type": "protein",
"text": [
"cortactin"
],
"offsets": [
[
82,
91
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2017"
},
{
"db_name": "hgnc",
"db_id": "CTTN"
},
{
"db_name": "uniprot",
"db_id": "Q14247"
}
]
},
{
"id": "1.0alpha7.train.494.ent2_0",
"type": "protein-complex",
"text": [
"Arp2/3"
],
"offsets": [
[
140,
146
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.494.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
55,
60
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004000"
}
]
},
{
"id": "1.0alpha7.train.494.ent4_0",
"type": "protein",
"text": [
"F-actin"
],
"offsets": [
[
53,
60
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.494.coref0",
"entity_ids": [
"1.0alpha7.train.494.ent0_0"
]
},
{
"id": "1.0alpha7.train.494.coref1",
"entity_ids": [
"1.0alpha7.train.494.ent1_0"
]
},
{
"id": "1.0alpha7.train.494.coref2",
"entity_ids": [
"1.0alpha7.train.494.ent2_0"
]
},
{
"id": "1.0alpha7.train.494.coref3",
"entity_ids": [
"1.0alpha7.train.494.ent3_0"
]
},
{
"id": "1.0alpha7.train.494.coref4",
"entity_ids": [
"1.0alpha7.train.494.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.494.rel0s1.0alpha7.train.494.ent1_0.o1.0alpha7.train.494.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.494.ent1_0",
"arg2_id": "1.0alpha7.train.494.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.494.rel1s1.0alpha7.train.494.ent1_0.o1.0alpha7.train.494.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.494.ent1_0",
"arg2_id": "1.0alpha7.train.494.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.495 | 1551561 | [
{
"id": "1.0alpha7.train.495.sent",
"type": "sentence",
"text": [
" Also, uptake into these tubules occurs through the LDL receptor that binds the multivalent apolipoprotein E component of beta-VLDL ( 30). "
],
"offsets": [
[
0,
143
]
]
}
] | [
{
"id": "1.0alpha7.train.495.ent0_0",
"type": "protein",
"text": [
"apolipoprotein E"
],
"offsets": [
[
94,
110
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "348"
},
{
"db_name": "hgnc",
"db_id": "APOE"
},
{
"db_name": "uniprot",
"db_id": "P02649"
}
]
},
{
"id": "1.0alpha7.train.495.ent1_0",
"type": "protein-complex",
"text": [
"beta-VLDL"
],
"offsets": [
[
125,
134
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.495.ent2_0",
"type": "protein-family",
"text": [
"LDL receptor"
],
"offsets": [
[
53,
65
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR036055"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.495.coref0",
"entity_ids": [
"1.0alpha7.train.495.ent0_0"
]
},
{
"id": "1.0alpha7.train.495.coref1",
"entity_ids": [
"1.0alpha7.train.495.ent1_0"
]
},
{
"id": "1.0alpha7.train.495.coref2",
"entity_ids": [
"1.0alpha7.train.495.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.495.rel0s1.0alpha7.train.495.ent0_0.o1.0alpha7.train.495.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.495.ent0_0",
"arg2_id": "1.0alpha7.train.495.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.495.rel1s1.0alpha7.train.495.ent1_0.o1.0alpha7.train.495.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.495.ent1_0",
"arg2_id": "1.0alpha7.train.495.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.496 | 2063195 | [
{
"id": "1.0alpha7.train.496.sent",
"type": "sentence",
"text": [
" On the other hand, fascin inhibits actin binding of cultured cell TM, when caldesmon is absent. "
],
"offsets": [
[
0,
102
]
]
}
] | [
{
"id": "1.0alpha7.train.496.ent0_0",
"type": "protein",
"text": [
"caldesmon"
],
"offsets": [
[
80,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "800"
},
{
"db_name": "hgnc",
"db_id": "CALD1"
},
{
"db_name": "uniprot",
"db_id": "E9PGZ1"
}
]
},
{
"id": "1.0alpha7.train.496.ent1_0",
"type": "protein-family",
"text": [
"fascin"
],
"offsets": [
[
21,
27
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR010431"
}
]
},
{
"id": "1.0alpha7.train.496.ent2_0",
"type": "protein-family",
"text": [
"TM"
],
"offsets": [
[
70,
72
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000533"
}
]
},
{
"id": "1.0alpha7.train.496.ent3_0",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
38,
43
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.496.coref0",
"entity_ids": [
"1.0alpha7.train.496.ent0_0"
]
},
{
"id": "1.0alpha7.train.496.coref1",
"entity_ids": [
"1.0alpha7.train.496.ent1_0"
]
},
{
"id": "1.0alpha7.train.496.coref2",
"entity_ids": [
"1.0alpha7.train.496.ent2_0"
]
},
{
"id": "1.0alpha7.train.496.coref3",
"entity_ids": [
"1.0alpha7.train.496.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.496.rel0s1.0alpha7.train.496.ent2_0.o1.0alpha7.train.496.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.496.ent2_0",
"arg2_id": "1.0alpha7.train.496.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.497 | 3194889 | [
{
"id": "1.0alpha7.train.497.sent",
"type": "sentence",
"text": [
"Amphiphysin 1 can bind simultaneously to dynamin and either clathrin or AP-2."
],
"offsets": [
[
0,
80
]
]
}
] | [
{
"id": "1.0alpha7.train.497.ent0_0",
"type": "protein-family",
"text": [
"dynamin"
],
"offsets": [
[
42,
49
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR022812"
}
]
},
{
"id": "1.0alpha7.train.497.ent1_0",
"type": "protein",
"text": [
"Amphiphysin 1"
],
"offsets": [
[
0,
13
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "273"
},
{
"db_name": "hgnc",
"db_id": "AMPH"
},
{
"db_name": "uniprot",
"db_id": "P49418"
}
]
},
{
"id": "1.0alpha7.train.497.ent2_0",
"type": "protein-complex",
"text": [
"AP-2"
],
"offsets": [
[
75,
79
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.497.ent3_0",
"type": "protein",
"text": [
"clathrin"
],
"offsets": [
[
62,
70
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1211"
},
{
"db_name": "hgnc",
"db_id": "CLTA"
},
{
"db_name": "uniprot",
"db_id": "P09496"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.497.coref0",
"entity_ids": [
"1.0alpha7.train.497.ent0_0"
]
},
{
"id": "1.0alpha7.train.497.coref1",
"entity_ids": [
"1.0alpha7.train.497.ent1_0"
]
},
{
"id": "1.0alpha7.train.497.coref2",
"entity_ids": [
"1.0alpha7.train.497.ent2_0"
]
},
{
"id": "1.0alpha7.train.497.coref3",
"entity_ids": [
"1.0alpha7.train.497.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.497.rel0s1.0alpha7.train.497.ent0_0.o1.0alpha7.train.497.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.497.ent0_0",
"arg2_id": "1.0alpha7.train.497.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.497.rel1s1.0alpha7.train.497.ent1_0.o1.0alpha7.train.497.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.497.ent1_0",
"arg2_id": "1.0alpha7.train.497.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.497.rel2s1.0alpha7.train.497.ent1_0.o1.0alpha7.train.497.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.497.ent1_0",
"arg2_id": "1.0alpha7.train.497.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.498 | 21460729 | [
{
"id": "1.0alpha7.train.498.sent",
"type": "sentence",
"text": [
" With 100 to 200 M H2O2, the BSO-treated AD cybrids had HSF-1 DNA binding activity equivalent to the AD cybrids that were not depleted of glutathione. "
],
"offsets": [
[
0,
155
]
]
}
] | [
{
"id": "1.0alpha7.train.498.ent0_0",
"type": "cell",
"text": [
"AD cybrids"
],
"offsets": [
[
42,
52
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.498.ent1_1",
"type": "cell",
"text": [
"AD cybrids"
],
"offsets": [
[
103,
113
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.498.ent2_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
64,
67
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.498.ent3_0",
"type": "reagent",
"text": [
"H2O2"
],
"offsets": [
[
20,
24
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.498.ent4_0",
"type": "reagent",
"text": [
"BSO"
],
"offsets": [
[
30,
33
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.498.ent5_0",
"type": "chemical",
"text": [
"glutathione"
],
"offsets": [
[
141,
152
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "124886"
}
]
},
{
"id": "1.0alpha7.train.498.ent6_0",
"type": "protein",
"text": [
"HSF-1"
],
"offsets": [
[
58,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3297"
},
{
"db_name": "hgnc",
"db_id": "HSF1"
},
{
"db_name": "uniprot",
"db_id": "Q00613"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.498.coref0",
"entity_ids": [
"1.0alpha7.train.498.ent0_0",
"1.0alpha7.train.498.ent1_1"
]
},
{
"id": "1.0alpha7.train.498.coref1",
"entity_ids": [
"1.0alpha7.train.498.ent2_0"
]
},
{
"id": "1.0alpha7.train.498.coref2",
"entity_ids": [
"1.0alpha7.train.498.ent3_0"
]
},
{
"id": "1.0alpha7.train.498.coref3",
"entity_ids": [
"1.0alpha7.train.498.ent4_0"
]
},
{
"id": "1.0alpha7.train.498.coref4",
"entity_ids": [
"1.0alpha7.train.498.ent5_0"
]
},
{
"id": "1.0alpha7.train.498.coref5",
"entity_ids": [
"1.0alpha7.train.498.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.498.rel0s1.0alpha7.train.498.ent2_0.o1.0alpha7.train.498.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.498.ent2_0",
"arg2_id": "1.0alpha7.train.498.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.499 | 54841 | [
{
"id": "1.0alpha7.train.499.sent",
"type": "sentence",
"text": [
"1) We have demonstrated that tropomyosin and troponin are actually bound to the actin filaments at motility assay conditions."
],
"offsets": [
[
0,
130
]
]
}
] | [
{
"id": "1.0alpha7.train.499.ent0_0",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
84,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
},
{
"id": "1.0alpha7.train.499.ent1_0",
"type": "protein-family",
"text": [
"tropomyosin"
],
"offsets": [
[
31,
42
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00261"
}
]
},
{
"id": "1.0alpha7.train.499.ent2_0",
"type": "protein-complex",
"text": [
"troponin"
],
"offsets": [
[
48,
56
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.499.coref0",
"entity_ids": [
"1.0alpha7.train.499.ent0_0"
]
},
{
"id": "1.0alpha7.train.499.coref1",
"entity_ids": [
"1.0alpha7.train.499.ent1_0"
]
},
{
"id": "1.0alpha7.train.499.coref2",
"entity_ids": [
"1.0alpha7.train.499.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.499.rel0s1.0alpha7.train.499.ent0_0.o1.0alpha7.train.499.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.499.ent0_0",
"arg2_id": "1.0alpha7.train.499.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.499.rel1s1.0alpha7.train.499.ent0_0.o1.0alpha7.train.499.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.499.ent0_0",
"arg2_id": "1.0alpha7.train.499.ent2_0",
"normalized": []
}
] |