id
stringlengths
17
20
document_id
stringlengths
5
8
passages
list
entities
list
events
list
coreferences
list
relations
list
1.0alpha7.train.600
11332746
[ { "id": "1.0alpha7.train.600.sent", "type": "sentence", "text": [ "To determine when TRX binds to the BX-C and whether its binding exhibits temporal changes during early development when PcG silencing is established, in vivo fixed chromatin was prepared from embryos of three different stages; 0-2, 2-5 and 5-8 h after egg laying." ], "offsets": [ [ 0, 263 ] ] } ]
[ { "id": "1.0alpha7.train.600.ent0_0", "type": "protein", "text": [ "TRX" ], "offsets": [ [ 18, 21 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7295" }, { "db_name": "hgnc", "db_id": "TXN" }, { "db_name": "uniprot", "db_id": "P10599" } ] }, { "id": "1.0alpha7.train.600.ent1_0", "type": "protein-complex", "text": [ "BX-C" ], "offsets": [ [ 35, 39 ] ], "normalized": [] }, { "id": "1.0alpha7.train.600.ent2_0", "type": "protein-family", "text": [ "PcG" ], "offsets": [ [ 120, 123 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.600.coref0", "entity_ids": [ "1.0alpha7.train.600.ent0_0" ] }, { "id": "1.0alpha7.train.600.coref1", "entity_ids": [ "1.0alpha7.train.600.ent1_0" ] }, { "id": "1.0alpha7.train.600.coref2", "entity_ids": [ "1.0alpha7.train.600.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.600.rel0s1.0alpha7.train.600.ent0_0.o1.0alpha7.train.600.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.600.ent0_0", "arg2_id": "1.0alpha7.train.600.ent1_0", "normalized": [] } ]
1.0alpha7.train.601
23643812
[ { "id": "1.0alpha7.train.601.sent", "type": "sentence", "text": [ " Using co-immunoprecipitation approaches, we showed that dSlo binds only to free PKAc but not to the PKA holoenzyme, and that both PKA regulatory subunit and PKI inhibit the association between dSlo and PKAc. " ], "offsets": [ [ 0, 217 ] ] } ]
[ { "id": "1.0alpha7.train.601.ent0_0", "type": "protein", "text": [ "dSlo" ], "offsets": [ [ 58, 62 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q03720" } ] }, { "id": "1.0alpha7.train.601.ent1_1", "type": "protein", "text": [ "dSlo" ], "offsets": [ [ 200, 204 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q03720" } ] }, { "id": "1.0alpha7.train.601.ent2_0", "type": "protein-family", "text": [ "PKI" ], "offsets": [ [ 163, 166 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR004171" } ] }, { "id": "1.0alpha7.train.601.ent3_0", "type": "protein-complex", "text": [ "PKA regulatory subunit" ], "offsets": [ [ 135, 157 ] ], "normalized": [] }, { "id": "1.0alpha7.train.601.ent4_0", "type": "protein-complex", "text": [ "PKA holoenzyme" ], "offsets": [ [ 104, 118 ] ], "normalized": [] }, { "id": "1.0alpha7.train.601.ent5_0", "type": "protein", "text": [ "PKAc" ], "offsets": [ [ 83, 87 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5566" }, { "db_name": "hgnc", "db_id": "PRKACA" }, { "db_name": "uniprot", "db_id": "P17612" } ] }, { "id": "1.0alpha7.train.601.ent6_1", "type": "protein", "text": [ "PKAc" ], "offsets": [ [ 210, 214 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5566" }, { "db_name": "hgnc", "db_id": "PRKACA" }, { "db_name": "uniprot", "db_id": "P17612" } ] } ]
[]
[ { "id": "1.0alpha7.train.601.coref0", "entity_ids": [ "1.0alpha7.train.601.ent0_0", "1.0alpha7.train.601.ent1_1" ] }, { "id": "1.0alpha7.train.601.coref1", "entity_ids": [ "1.0alpha7.train.601.ent2_0" ] }, { "id": "1.0alpha7.train.601.coref2", "entity_ids": [ "1.0alpha7.train.601.ent3_0" ] }, { "id": "1.0alpha7.train.601.coref3", "entity_ids": [ "1.0alpha7.train.601.ent4_0" ] }, { "id": "1.0alpha7.train.601.coref4", "entity_ids": [ "1.0alpha7.train.601.ent5_0", "1.0alpha7.train.601.ent6_1" ] } ]
[ { "id": "1.0alpha7.train.601.rel0s1.0alpha7.train.601.ent0_0.o1.0alpha7.train.601.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.601.ent0_0", "arg2_id": "1.0alpha7.train.601.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.601.rel0s1.0alpha7.train.601.ent0_0.o1.0alpha7.train.601.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.601.ent0_0", "arg2_id": "1.0alpha7.train.601.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.601.rel0s1.0alpha7.train.601.ent1_1.o1.0alpha7.train.601.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.601.ent1_1", "arg2_id": "1.0alpha7.train.601.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.601.rel0s1.0alpha7.train.601.ent1_1.o1.0alpha7.train.601.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.601.ent1_1", "arg2_id": "1.0alpha7.train.601.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.601.rel1s1.0alpha7.train.601.ent0_0.o1.0alpha7.train.601.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.601.ent0_0", "arg2_id": "1.0alpha7.train.601.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.601.rel1s1.0alpha7.train.601.ent1_1.o1.0alpha7.train.601.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.601.ent1_1", "arg2_id": "1.0alpha7.train.601.ent4_0", "normalized": [] } ]
1.0alpha7.train.602
1712717
[ { "id": "1.0alpha7.train.602.sent", "type": "sentence", "text": [ " However, unlike SHC, binding of Numb PTB domain to LNX does not require tyrosine phosphorylation. " ], "offsets": [ [ 0, 103 ] ] } ]
[ { "id": "1.0alpha7.train.602.ent0_0", "type": "protein-family", "text": [ "SHC" ], "offsets": [ [ 18, 21 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR029586" } ] }, { "id": "1.0alpha7.train.602.ent1_0", "type": "protein-domain", "text": [ "PTB" ], "offsets": [ [ 40, 43 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR006020" } ] }, { "id": "1.0alpha7.train.602.ent2_0", "type": "protein", "text": [ "Numb" ], "offsets": [ [ 35, 39 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8650" }, { "db_name": "hgnc", "db_id": "NUMB" }, { "db_name": "uniprot", "db_id": "P49757" } ] }, { "id": "1.0alpha7.train.602.ent3_0", "type": "protein", "text": [ "LNX" ], "offsets": [ [ 55, 58 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "84708" }, { "db_name": "hgnc", "db_id": "LNX1" }, { "db_name": "uniprot", "db_id": "Q8TBB1" } ] } ]
[]
[ { "id": "1.0alpha7.train.602.coref0", "entity_ids": [ "1.0alpha7.train.602.ent0_0" ] }, { "id": "1.0alpha7.train.602.coref1", "entity_ids": [ "1.0alpha7.train.602.ent1_0" ] }, { "id": "1.0alpha7.train.602.coref2", "entity_ids": [ "1.0alpha7.train.602.ent2_0" ] }, { "id": "1.0alpha7.train.602.coref3", "entity_ids": [ "1.0alpha7.train.602.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.602.rel0s1.0alpha7.train.602.ent0_0.o1.0alpha7.train.602.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.602.ent0_0", "arg2_id": "1.0alpha7.train.602.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.602.rel1s1.0alpha7.train.602.ent2_0.o1.0alpha7.train.602.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.602.ent2_0", "arg2_id": "1.0alpha7.train.602.ent3_0", "normalized": [] } ]
1.0alpha7.train.603
6972368
[ { "id": "1.0alpha7.train.603.sent", "type": "sentence", "text": [ " As a result this protein lacks the sequences that are know to mediate either the transcriptional activation or pRB, p107, or p130 binding properties of the other E2F proteins. " ], "offsets": [ [ 0, 183 ] ] } ]
[ { "id": "1.0alpha7.train.603.ent0_0", "type": "protein", "text": [ "p107" ], "offsets": [ [ 120, 124 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5933" }, { "db_name": "hgnc", "db_id": "RBL1" }, { "db_name": "uniprot", "db_id": "P28749" } ] }, { "id": "1.0alpha7.train.603.ent1_0", "type": "protein-family", "text": [ "E2F" ], "offsets": [ [ 168, 171 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR015633" } ] }, { "id": "1.0alpha7.train.603.ent2_0", "type": "protein-family", "text": [ "E2F proteins" ], "offsets": [ [ 168, 180 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR015633" } ] }, { "id": "1.0alpha7.train.603.ent3_0", "type": "protein", "text": [ "p130" ], "offsets": [ [ 130, 134 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5934" }, { "db_name": "hgnc", "db_id": "RBL2" }, { "db_name": "uniprot", "db_id": "Q08999" } ] }, { "id": "1.0alpha7.train.603.ent4_0", "type": "protein", "text": [ "pRB" ], "offsets": [ [ 114, 117 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5925" }, { "db_name": "hgnc", "db_id": "RB1" }, { "db_name": "uniprot", "db_id": "P06400" } ] } ]
[]
[ { "id": "1.0alpha7.train.603.coref0", "entity_ids": [ "1.0alpha7.train.603.ent0_0" ] }, { "id": "1.0alpha7.train.603.coref1", "entity_ids": [ "1.0alpha7.train.603.ent1_0", "1.0alpha7.train.603.ent2_0" ] }, { "id": "1.0alpha7.train.603.coref2", "entity_ids": [ "1.0alpha7.train.603.ent3_0" ] }, { "id": "1.0alpha7.train.603.coref3", "entity_ids": [ "1.0alpha7.train.603.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.603.rel0s1.0alpha7.train.603.ent1_0.o1.0alpha7.train.603.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.603.ent1_0", "arg2_id": "1.0alpha7.train.603.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.603.rel0s1.0alpha7.train.603.ent2_0.o1.0alpha7.train.603.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.603.ent2_0", "arg2_id": "1.0alpha7.train.603.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.603.rel1s1.0alpha7.train.603.ent0_0.o1.0alpha7.train.603.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.603.ent0_0", "arg2_id": "1.0alpha7.train.603.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.603.rel1s1.0alpha7.train.603.ent0_0.o1.0alpha7.train.603.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.603.ent0_0", "arg2_id": "1.0alpha7.train.603.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.603.rel2s1.0alpha7.train.603.ent1_0.o1.0alpha7.train.603.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.603.ent1_0", "arg2_id": "1.0alpha7.train.603.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.603.rel2s1.0alpha7.train.603.ent2_0.o1.0alpha7.train.603.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.603.ent2_0", "arg2_id": "1.0alpha7.train.603.ent3_0", "normalized": [] } ]
1.0alpha7.train.604
22867040
[ { "id": "1.0alpha7.train.604.sent", "type": "sentence", "text": [ "This suggests that the binding of dynactin to MTs is modulated for different tasks in different neuronal locations." ], "offsets": [ [ 0, 117 ] ] } ]
[ { "id": "1.0alpha7.train.604.ent0_0", "type": "organelle", "text": [ "MTs" ], "offsets": [ [ 48, 51 ] ], "normalized": [] }, { "id": "1.0alpha7.train.604.ent1_0", "type": "protein-complex", "text": [ "dynactin" ], "offsets": [ [ 35, 43 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.604.coref0", "entity_ids": [ "1.0alpha7.train.604.ent0_0" ] }, { "id": "1.0alpha7.train.604.coref1", "entity_ids": [ "1.0alpha7.train.604.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.604.rel0s1.0alpha7.train.604.ent0_0.o1.0alpha7.train.604.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.604.ent0_0", "arg2_id": "1.0alpha7.train.604.ent1_0", "normalized": [] } ]
1.0alpha7.train.605
12551602
[ { "id": "1.0alpha7.train.605.sent", "type": "sentence", "text": [ "( B) Clathrin binding to amphiphysin." ], "offsets": [ [ 0, 39 ] ] } ]
[ { "id": "1.0alpha7.train.605.ent0_0", "type": "protein", "text": [ "Clathrin" ], "offsets": [ [ 6, 14 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1211" }, { "db_name": "hgnc", "db_id": "CLTA" }, { "db_name": "uniprot", "db_id": "P09496" } ] }, { "id": "1.0alpha7.train.605.ent1_0", "type": "protein", "text": [ "amphiphysin" ], "offsets": [ [ 27, 38 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "273" }, { "db_name": "hgnc", "db_id": "AMPH" }, { "db_name": "uniprot", "db_id": "P49418" } ] } ]
[]
[ { "id": "1.0alpha7.train.605.coref0", "entity_ids": [ "1.0alpha7.train.605.ent0_0" ] }, { "id": "1.0alpha7.train.605.coref1", "entity_ids": [ "1.0alpha7.train.605.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.605.rel0s1.0alpha7.train.605.ent0_0.o1.0alpha7.train.605.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.605.ent0_0", "arg2_id": "1.0alpha7.train.605.ent1_0", "normalized": [] } ]
1.0alpha7.train.606
1266507
[ { "id": "1.0alpha7.train.606.sent", "type": "sentence", "text": [ " We observed PABP binding to eIF-4F, eIF-iso4F, or eIF-4B using a far Western assay and direct fluorescence measurements. " ], "offsets": [ [ 0, 127 ] ] } ]
[ { "id": "1.0alpha7.train.606.ent0_0", "type": "protein", "text": [ "eIF-4B" ], "offsets": [ [ 55, 61 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1975" }, { "db_name": "hgnc", "db_id": "EIF4B" }, { "db_name": "uniprot", "db_id": "P23588" } ] }, { "id": "1.0alpha7.train.606.ent1_0", "type": "protein-complex", "text": [ "eIF-iso4F" ], "offsets": [ [ 40, 49 ] ], "normalized": [] }, { "id": "1.0alpha7.train.606.ent2_0", "type": "protein-complex", "text": [ "eIF-4F" ], "offsets": [ [ 31, 37 ] ], "normalized": [] }, { "id": "1.0alpha7.train.606.ent3_0", "type": "protein-family", "text": [ "PABP" ], "offsets": [ [ 14, 18 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR036053" } ] } ]
[]
[ { "id": "1.0alpha7.train.606.coref0", "entity_ids": [ "1.0alpha7.train.606.ent0_0" ] }, { "id": "1.0alpha7.train.606.coref1", "entity_ids": [ "1.0alpha7.train.606.ent1_0" ] }, { "id": "1.0alpha7.train.606.coref2", "entity_ids": [ "1.0alpha7.train.606.ent2_0" ] }, { "id": "1.0alpha7.train.606.coref3", "entity_ids": [ "1.0alpha7.train.606.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.606.rel0s1.0alpha7.train.606.ent2_0.o1.0alpha7.train.606.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.606.ent2_0", "arg2_id": "1.0alpha7.train.606.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.606.rel1s1.0alpha7.train.606.ent1_0.o1.0alpha7.train.606.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.606.ent1_0", "arg2_id": "1.0alpha7.train.606.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.606.rel2s1.0alpha7.train.606.ent0_0.o1.0alpha7.train.606.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.606.ent0_0", "arg2_id": "1.0alpha7.train.606.ent3_0", "normalized": [] } ]
1.0alpha7.train.607
23700747
[ { "id": "1.0alpha7.train.607.sent", "type": "sentence", "text": [ "The L27 domains of PSD95β and SAP97 bind Hrs" ], "offsets": [ [ 0, 44 ] ] } ]
[ { "id": "1.0alpha7.train.607.ent0_0", "type": "protein", "text": [ "PSD95β" ], "offsets": [ [ 19, 25 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1742" }, { "db_name": "hgnc", "db_id": "DLG4" }, { "db_name": "uniprot", "db_id": "P78352" } ] }, { "id": "1.0alpha7.train.607.ent1_0", "type": "protein", "text": [ "Hrs" ], "offsets": [ [ 41, 44 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q960X8" } ] }, { "id": "1.0alpha7.train.607.ent2_0", "type": "protein-domain", "text": [ "L27" ], "offsets": [ [ 4, 7 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR004172" } ] }, { "id": "1.0alpha7.train.607.ent3_0", "type": "protein", "text": [ "SAP97" ], "offsets": [ [ 30, 35 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1739" }, { "db_name": "hgnc", "db_id": "DLG1" }, { "db_name": "uniprot", "db_id": "Q12959" } ] } ]
[]
[ { "id": "1.0alpha7.train.607.coref0", "entity_ids": [ "1.0alpha7.train.607.ent0_0" ] }, { "id": "1.0alpha7.train.607.coref1", "entity_ids": [ "1.0alpha7.train.607.ent1_0" ] }, { "id": "1.0alpha7.train.607.coref2", "entity_ids": [ "1.0alpha7.train.607.ent2_0" ] }, { "id": "1.0alpha7.train.607.coref3", "entity_ids": [ "1.0alpha7.train.607.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.607.rel0s1.0alpha7.train.607.ent0_0.o1.0alpha7.train.607.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.607.ent0_0", "arg2_id": "1.0alpha7.train.607.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.607.rel1s1.0alpha7.train.607.ent1_0.o1.0alpha7.train.607.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.607.ent1_0", "arg2_id": "1.0alpha7.train.607.ent3_0", "normalized": [] } ]
1.0alpha7.train.608
25318924
[ { "id": "1.0alpha7.train.608.sent", "type": "sentence", "text": [ "But what is the in vivo function of PlexB binding to Rac?" ], "offsets": [ [ 0, 59 ] ] } ]
[ { "id": "1.0alpha7.train.608.ent0_0", "type": "protein-family", "text": [ "Rac" ], "offsets": [ [ 55, 58 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR039027" } ] }, { "id": "1.0alpha7.train.608.ent1_0", "type": "protein", "text": [ "PlexB" ], "offsets": [ [ 37, 42 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q9V4A7" } ] } ]
[]
[ { "id": "1.0alpha7.train.608.coref0", "entity_ids": [ "1.0alpha7.train.608.ent0_0" ] }, { "id": "1.0alpha7.train.608.coref1", "entity_ids": [ "1.0alpha7.train.608.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.608.rel0s1.0alpha7.train.608.ent0_0.o1.0alpha7.train.608.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.608.ent0_0", "arg2_id": "1.0alpha7.train.608.ent1_0", "normalized": [] } ]
1.0alpha7.train.609
466336
[ { "id": "1.0alpha7.train.609.sent", "type": "sentence", "text": [ "GST or the GST-fusion proteins were first bound to the Glutathione-agarose beads followed by the addition of purified PDI and centrifugation to collect the unbound material." ], "offsets": [ [ 0, 178 ] ] } ]
[ { "id": "1.0alpha7.train.609.ent0_0", "type": "reagent", "text": [ "Glutathione-agarose beads" ], "offsets": [ [ 58, 83 ] ], "normalized": [] }, { "id": "1.0alpha7.train.609.ent1_0", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 0, 3 ] ], "normalized": [ { "db_name": "intenz", "db_id": "2.5.1.18" } ] }, { "id": "1.0alpha7.train.609.ent2_1", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 12, 15 ] ], "normalized": [ { "db_name": "intenz", "db_id": "2.5.1.18" } ] }, { "id": "1.0alpha7.train.609.ent3_0", "type": "protein-family", "text": [ "PDI" ], "offsets": [ [ 122, 125 ] ], "normalized": [ { "db_name": "intenz", "db_id": "https://www.ebi.ac.uk/intenz/query?cmd" } ] } ]
[]
[ { "id": "1.0alpha7.train.609.coref0", "entity_ids": [ "1.0alpha7.train.609.ent0_0" ] }, { "id": "1.0alpha7.train.609.coref1", "entity_ids": [ "1.0alpha7.train.609.ent1_0", "1.0alpha7.train.609.ent2_1" ] }, { "id": "1.0alpha7.train.609.coref2", "entity_ids": [ "1.0alpha7.train.609.ent3_0" ] } ]
[]
1.0alpha7.train.610
5411277
[ { "id": "1.0alpha7.train.610.sent", "type": "sentence", "text": [ "A short fragment of Vtg was aligned with the binding sequences of apoB and apoE." ], "offsets": [ [ 0, 83 ] ] } ]
[ { "id": "1.0alpha7.train.610.ent0_0", "type": "protein", "text": [ "apoE" ], "offsets": [ [ 78, 82 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "348" }, { "db_name": "hgnc", "db_id": "APOE" }, { "db_name": "uniprot", "db_id": "P02649" } ] }, { "id": "1.0alpha7.train.610.ent1_0", "type": "protein", "text": [ "apoB" ], "offsets": [ [ 68, 72 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "338" }, { "db_name": "hgnc", "db_id": "APOB" }, { "db_name": "uniprot", "db_id": "A8MUN2" } ] }, { "id": "1.0alpha7.train.610.ent2_0", "type": "protein", "text": [ "Vtg" ], "offsets": [ [ 21, 24 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.610.coref0", "entity_ids": [ "1.0alpha7.train.610.ent0_0" ] }, { "id": "1.0alpha7.train.610.coref1", "entity_ids": [ "1.0alpha7.train.610.ent1_0" ] }, { "id": "1.0alpha7.train.610.coref2", "entity_ids": [ "1.0alpha7.train.610.ent2_0" ] } ]
[]
1.0alpha7.train.611
2869449
[ { "id": "1.0alpha7.train.611.sent", "type": "sentence", "text": [ "On the other hand, our findings contrast with those of Kamata et al. (26), who reported that recombinant 125I-GST-α2-I domain bound to collagen in a metal-independent manner." ], "offsets": [ [ 0, 174 ] ] } ]
[ { "id": "1.0alpha7.train.611.ent0_0", "type": "protein-family", "text": [ "collagen" ], "offsets": [ [ 135, 143 ] ], "normalized": [] }, { "id": "1.0alpha7.train.611.ent1_0", "type": "protein-domain", "text": [ "α2-I" ], "offsets": [ [ 114, 118 ] ], "normalized": [] }, { "id": "1.0alpha7.train.611.ent2_0", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 110, 113 ] ], "normalized": [] }, { "id": "1.0alpha7.train.611.ent3_0", "type": "experimental-construct", "text": [ "125I-GST-α2-I" ], "offsets": [ [ 105, 118 ] ], "normalized": [] }, { "id": "1.0alpha7.train.611.ent4_0", "type": "experiment-tag", "text": [ "125I" ], "offsets": [ [ 105, 109 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.611.coref0", "entity_ids": [ "1.0alpha7.train.611.ent0_0" ] }, { "id": "1.0alpha7.train.611.coref1", "entity_ids": [ "1.0alpha7.train.611.ent1_0" ] }, { "id": "1.0alpha7.train.611.coref2", "entity_ids": [ "1.0alpha7.train.611.ent2_0" ] }, { "id": "1.0alpha7.train.611.coref3", "entity_ids": [ "1.0alpha7.train.611.ent3_0" ] }, { "id": "1.0alpha7.train.611.coref4", "entity_ids": [ "1.0alpha7.train.611.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.611.rel0s1.0alpha7.train.611.ent0_0.o1.0alpha7.train.611.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.611.ent0_0", "arg2_id": "1.0alpha7.train.611.ent3_0", "normalized": [] } ]
1.0alpha7.train.612
4115418
[ { "id": "1.0alpha7.train.612.sent", "type": "sentence", "text": [ "These findings represent the first mapping of an intermediate chain phosphorylation site and suggest that this phosphorylation plays an important role in regulating the binding of cytoplasmic dynein to dynactin." ], "offsets": [ [ 0, 213 ] ] } ]
[ { "id": "1.0alpha7.train.612.ent0_0", "type": "protein-family", "text": [ "dynein" ], "offsets": [ [ 193, 199 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR037177" } ] }, { "id": "1.0alpha7.train.612.ent1_0", "type": "protein-complex", "text": [ "dynactin" ], "offsets": [ [ 204, 212 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.612.coref0", "entity_ids": [ "1.0alpha7.train.612.ent0_0" ] }, { "id": "1.0alpha7.train.612.coref1", "entity_ids": [ "1.0alpha7.train.612.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.612.rel0s1.0alpha7.train.612.ent0_0.o1.0alpha7.train.612.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.612.ent0_0", "arg2_id": "1.0alpha7.train.612.ent1_0", "normalized": [] } ]
1.0alpha7.train.613
4249850
[ { "id": "1.0alpha7.train.613.sent", "type": "sentence", "text": [ " B, comparative binding of HMG-1 and HMG-1(A-B) to TBP/TATA complex. " ], "offsets": [ [ 0, 73 ] ] } ]
[ { "id": "1.0alpha7.train.613.ent0_0", "type": "protein", "text": [ "TBP" ], "offsets": [ [ 54, 57 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6908" }, { "db_name": "hgnc", "db_id": "TBP" }, { "db_name": "uniprot", "db_id": "P20226" } ] }, { "id": "1.0alpha7.train.613.ent1_0", "type": "protein", "text": [ "HMG-1" ], "offsets": [ [ 28, 33 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3146" }, { "db_name": "hgnc", "db_id": "HMGB1" }, { "db_name": "uniprot", "db_id": "P09429" } ] }, { "id": "1.0alpha7.train.613.ent2_1", "type": "protein", "text": [ "HMG-1" ], "offsets": [ [ 39, 44 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3146" }, { "db_name": "hgnc", "db_id": "HMGB1" }, { "db_name": "uniprot", "db_id": "P09429" } ] }, { "id": "1.0alpha7.train.613.ent3_0", "type": "DNA", "text": [ "TATA" ], "offsets": [ [ 58, 62 ] ], "normalized": [] }, { "id": "1.0alpha7.train.613.ent4_0", "type": "protein-region", "text": [ "HMG-1(A-B)" ], "offsets": [ [ 39, 49 ] ], "normalized": [] }, { "id": "1.0alpha7.train.613.ent5_0", "type": "protein-complex", "text": [ "TBP/TATA complex" ], "offsets": [ [ 54, 70 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.613.coref0", "entity_ids": [ "1.0alpha7.train.613.ent0_0" ] }, { "id": "1.0alpha7.train.613.coref1", "entity_ids": [ "1.0alpha7.train.613.ent1_0", "1.0alpha7.train.613.ent2_1" ] }, { "id": "1.0alpha7.train.613.coref2", "entity_ids": [ "1.0alpha7.train.613.ent3_0" ] }, { "id": "1.0alpha7.train.613.coref3", "entity_ids": [ "1.0alpha7.train.613.ent4_0" ] }, { "id": "1.0alpha7.train.613.coref4", "entity_ids": [ "1.0alpha7.train.613.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.613.rel0s1.0alpha7.train.613.ent0_0.o1.0alpha7.train.613.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.613.ent0_0", "arg2_id": "1.0alpha7.train.613.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.613.rel1s1.0alpha7.train.613.ent1_0.o1.0alpha7.train.613.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.613.ent1_0", "arg2_id": "1.0alpha7.train.613.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.613.rel1s1.0alpha7.train.613.ent2_1.o1.0alpha7.train.613.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.613.ent2_1", "arg2_id": "1.0alpha7.train.613.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.613.rel2s1.0alpha7.train.613.ent4_0.o1.0alpha7.train.613.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.613.ent4_0", "arg2_id": "1.0alpha7.train.613.ent5_0", "normalized": [] } ]
1.0alpha7.train.614
4251025
[ { "id": "1.0alpha7.train.614.sent", "type": "sentence", "text": [ "To explore whether proteins such as Hsp90 that bind the PAR-1 C-tail are important for signaling, human neuronal cells (Ad12HER10) were transfected with C-tail overexpression constructs to specifically disrupt the endogenous PAR-1 interaction with Hsp90. " ], "offsets": [ [ 0, 255 ] ] } ]
[ { "id": "1.0alpha7.train.614.ent0_0", "type": "cell", "text": [ "Ad12HER10" ], "offsets": [ [ 120, 129 ] ], "normalized": [] }, { "id": "1.0alpha7.train.614.ent1_0", "type": "protein-family", "text": [ "Hsp90" ], "offsets": [ [ 36, 41 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR001404" } ] }, { "id": "1.0alpha7.train.614.ent2_1", "type": "protein-family", "text": [ "Hsp90" ], "offsets": [ [ 248, 253 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR001404" } ] }, { "id": "1.0alpha7.train.614.ent3_0", "type": "protein", "text": [ "PAR-1" ], "offsets": [ [ 56, 61 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q963E5" } ] }, { "id": "1.0alpha7.train.614.ent4_1", "type": "protein", "text": [ "PAR-1" ], "offsets": [ [ 225, 230 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q963E5" } ] } ]
[]
[ { "id": "1.0alpha7.train.614.coref0", "entity_ids": [ "1.0alpha7.train.614.ent0_0" ] }, { "id": "1.0alpha7.train.614.coref1", "entity_ids": [ "1.0alpha7.train.614.ent1_0", "1.0alpha7.train.614.ent2_1" ] }, { "id": "1.0alpha7.train.614.coref2", "entity_ids": [ "1.0alpha7.train.614.ent3_0", "1.0alpha7.train.614.ent4_1" ] } ]
[ { "id": "1.0alpha7.train.614.rel0s1.0alpha7.train.614.ent1_0.o1.0alpha7.train.614.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.614.ent1_0", "arg2_id": "1.0alpha7.train.614.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.614.rel0s1.0alpha7.train.614.ent1_0.o1.0alpha7.train.614.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.614.ent1_0", "arg2_id": "1.0alpha7.train.614.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.614.rel0s1.0alpha7.train.614.ent2_1.o1.0alpha7.train.614.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.614.ent2_1", "arg2_id": "1.0alpha7.train.614.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.614.rel0s1.0alpha7.train.614.ent2_1.o1.0alpha7.train.614.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.614.ent2_1", "arg2_id": "1.0alpha7.train.614.ent4_1", "normalized": [] } ]
1.0alpha7.train.615
4015562
[ { "id": "1.0alpha7.train.615.sent", "type": "sentence", "text": [ "However, although the armadillo domain is much more accessible, E-cadherin does not bind to phosphorylated β-catenin since the presence of a negative charge makes it difficult to establish the correct ion pairs required for the interaction between these two proteins (lower right). " ], "offsets": [ [ 0, 282 ] ] } ]
[ { "id": "1.0alpha7.train.615.ent0_0", "type": "protein-family", "text": [ "β-catenin" ], "offsets": [ [ 107, 116 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR013284" } ] }, { "id": "1.0alpha7.train.615.ent1_0", "type": "protein-domain", "text": [ "armadillo domain" ], "offsets": [ [ 22, 38 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR006911" } ] }, { "id": "1.0alpha7.train.615.ent2_0", "type": "protein", "text": [ "E-cadherin" ], "offsets": [ [ 64, 74 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "999" }, { "db_name": "hgnc", "db_id": "CDH1" }, { "db_name": "uniprot", "db_id": "P12830" } ] } ]
[]
[ { "id": "1.0alpha7.train.615.coref0", "entity_ids": [ "1.0alpha7.train.615.ent0_0" ] }, { "id": "1.0alpha7.train.615.coref1", "entity_ids": [ "1.0alpha7.train.615.ent1_0" ] }, { "id": "1.0alpha7.train.615.coref2", "entity_ids": [ "1.0alpha7.train.615.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.615.rel0s1.0alpha7.train.615.ent0_0.o1.0alpha7.train.615.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.615.ent0_0", "arg2_id": "1.0alpha7.train.615.ent2_0", "normalized": [] } ]
1.0alpha7.train.616
1925497
[ { "id": "1.0alpha7.train.616.sent", "type": "sentence", "text": [ "It is possible that the insert mediates direct binding of MEK to ERK or that it binds other proteins that affect MEK-ERK coupling." ], "offsets": [ [ 0, 133 ] ] } ]
[ { "id": "1.0alpha7.train.616.ent0_0", "type": "protein-family", "text": [ "MEK" ], "offsets": [ [ 59, 62 ] ], "normalized": [ { "db_name": "intenz", "db_id": "https://www.ebi.ac.uk/intenz/query?cmd" } ] }, { "id": "1.0alpha7.train.616.ent1_1", "type": "protein-family", "text": [ "MEK" ], "offsets": [ [ 116, 119 ] ], "normalized": [ { "db_name": "intenz", "db_id": "https://www.ebi.ac.uk/intenz/query?cmd" } ] }, { "id": "1.0alpha7.train.616.ent2_0", "type": "protein", "text": [ "ERK" ], "offsets": [ [ 67, 70 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5594" }, { "db_name": "hgnc", "db_id": "MAPK1" }, { "db_name": "uniprot", "db_id": "P28482" } ] }, { "id": "1.0alpha7.train.616.ent3_1", "type": "protein", "text": [ "ERK" ], "offsets": [ [ 120, 123 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5594" }, { "db_name": "hgnc", "db_id": "MAPK1" }, { "db_name": "uniprot", "db_id": "P28482" } ] } ]
[]
[ { "id": "1.0alpha7.train.616.coref0", "entity_ids": [ "1.0alpha7.train.616.ent0_0", "1.0alpha7.train.616.ent1_1" ] }, { "id": "1.0alpha7.train.616.coref1", "entity_ids": [ "1.0alpha7.train.616.ent2_0", "1.0alpha7.train.616.ent3_1" ] } ]
[ { "id": "1.0alpha7.train.616.rel0s1.0alpha7.train.616.ent0_0.o1.0alpha7.train.616.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.616.ent0_0", "arg2_id": "1.0alpha7.train.616.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.616.rel0s1.0alpha7.train.616.ent0_0.o1.0alpha7.train.616.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.616.ent0_0", "arg2_id": "1.0alpha7.train.616.ent3_1", "normalized": [] }, { "id": "1.0alpha7.train.616.rel0s1.0alpha7.train.616.ent1_1.o1.0alpha7.train.616.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.616.ent1_1", "arg2_id": "1.0alpha7.train.616.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.616.rel0s1.0alpha7.train.616.ent1_1.o1.0alpha7.train.616.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.616.ent1_1", "arg2_id": "1.0alpha7.train.616.ent3_1", "normalized": [] } ]
1.0alpha7.train.617
6956340
[ { "id": "1.0alpha7.train.617.sent", "type": "sentence", "text": [ "The exchange of [3H]GDP bound to eIF2 for free GDP was measured as a decrease in the amount of eIF2.[3H]GDP retained on nitrocellulose filters at various times." ], "offsets": [ [ 0, 160 ] ] } ]
[ { "id": "1.0alpha7.train.617.ent0_0", "type": "chemical", "text": [ "GDP" ], "offsets": [ [ 20, 23 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398618" } ] }, { "id": "1.0alpha7.train.617.ent1_1", "type": "chemical", "text": [ "GDP" ], "offsets": [ [ 47, 50 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398618" } ] }, { "id": "1.0alpha7.train.617.ent2_2", "type": "chemical", "text": [ "GDP" ], "offsets": [ [ 104, 107 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398618" } ] }, { "id": "1.0alpha7.train.617.ent3_0", "type": "chemical", "text": [ "[3H]GDP" ], "offsets": [ [ 16, 23 ] ], "normalized": [] }, { "id": "1.0alpha7.train.617.ent4_1", "type": "chemical", "text": [ "[3H]GDP" ], "offsets": [ [ 100, 107 ] ], "normalized": [] }, { "id": "1.0alpha7.train.617.ent5_0", "type": "protein-complex", "text": [ "eIF2" ], "offsets": [ [ 33, 37 ] ], "normalized": [] }, { "id": "1.0alpha7.train.617.ent6_1", "type": "protein-complex", "text": [ "eIF2" ], "offsets": [ [ 95, 99 ] ], "normalized": [] }, { "id": "1.0alpha7.train.617.ent7_0", "type": "protein-complex", "text": [ "eIF2.[3H]GDP" ], "offsets": [ [ 95, 107 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.617.coref0", "entity_ids": [ "1.0alpha7.train.617.ent0_0", "1.0alpha7.train.617.ent1_1", "1.0alpha7.train.617.ent2_2" ] }, { "id": "1.0alpha7.train.617.coref1", "entity_ids": [ "1.0alpha7.train.617.ent3_0", "1.0alpha7.train.617.ent4_1" ] }, { "id": "1.0alpha7.train.617.coref2", "entity_ids": [ "1.0alpha7.train.617.ent5_0", "1.0alpha7.train.617.ent6_1" ] }, { "id": "1.0alpha7.train.617.coref3", "entity_ids": [ "1.0alpha7.train.617.ent7_0" ] } ]
[ { "id": "1.0alpha7.train.617.rel0s1.0alpha7.train.617.ent0_0.o1.0alpha7.train.617.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent0_0", "arg2_id": "1.0alpha7.train.617.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.617.rel0s1.0alpha7.train.617.ent0_0.o1.0alpha7.train.617.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent0_0", "arg2_id": "1.0alpha7.train.617.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.617.rel0s1.0alpha7.train.617.ent1_1.o1.0alpha7.train.617.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent1_1", "arg2_id": "1.0alpha7.train.617.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.617.rel0s1.0alpha7.train.617.ent1_1.o1.0alpha7.train.617.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent1_1", "arg2_id": "1.0alpha7.train.617.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.617.rel0s1.0alpha7.train.617.ent2_2.o1.0alpha7.train.617.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent2_2", "arg2_id": "1.0alpha7.train.617.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.617.rel0s1.0alpha7.train.617.ent2_2.o1.0alpha7.train.617.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent2_2", "arg2_id": "1.0alpha7.train.617.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.617.rel1s1.0alpha7.train.617.ent3_0.o1.0alpha7.train.617.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent3_0", "arg2_id": "1.0alpha7.train.617.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.617.rel1s1.0alpha7.train.617.ent3_0.o1.0alpha7.train.617.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent3_0", "arg2_id": "1.0alpha7.train.617.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.617.rel1s1.0alpha7.train.617.ent4_1.o1.0alpha7.train.617.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent4_1", "arg2_id": "1.0alpha7.train.617.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.617.rel1s1.0alpha7.train.617.ent4_1.o1.0alpha7.train.617.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.617.ent4_1", "arg2_id": "1.0alpha7.train.617.ent6_1", "normalized": [] } ]
1.0alpha7.train.618
4372400
[ { "id": "1.0alpha7.train.618.sent", "type": "sentence", "text": [ "This model is consistent with the results of earlier studies of the binding of heparin to apoE." ], "offsets": [ [ 0, 97 ] ] } ]
[ { "id": "1.0alpha7.train.618.ent0_0", "type": "chemical", "text": [ "heparin" ], "offsets": [ [ 80, 87 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "772" } ] }, { "id": "1.0alpha7.train.618.ent1_0", "type": "protein-family", "text": [ "apoE" ], "offsets": [ [ 92, 96 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR000074" } ] } ]
[]
[ { "id": "1.0alpha7.train.618.coref0", "entity_ids": [ "1.0alpha7.train.618.ent0_0" ] }, { "id": "1.0alpha7.train.618.coref1", "entity_ids": [ "1.0alpha7.train.618.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.618.rel0s1.0alpha7.train.618.ent0_0.o1.0alpha7.train.618.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.618.ent0_0", "arg2_id": "1.0alpha7.train.618.ent1_0", "normalized": [] } ]
1.0alpha7.train.619
11426730
[ { "id": "1.0alpha7.train.619.sent", "type": "sentence", "text": [ "Gel retardation assay of the binding of TR/RXR heterodimer to the TRE reconstituted into nucleosome in vitro" ], "offsets": [ [ 0, 108 ] ] } ]
[ { "id": "1.0alpha7.train.619.ent0_0", "type": "DNA", "text": [ "TRE" ], "offsets": [ [ 66, 69 ] ], "normalized": [] }, { "id": "1.0alpha7.train.619.ent1_0", "type": "protein-complex", "text": [ "TR/RXR" ], "offsets": [ [ 40, 46 ] ], "normalized": [] }, { "id": "1.0alpha7.train.619.ent2_0", "type": "protein-family", "text": [ "RXR" ], "offsets": [ [ 43, 46 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6256" }, { "db_name": "hgnc", "db_id": "RXRA" }, { "db_name": "uniprot", "db_id": "P19793" } ] }, { "id": "1.0alpha7.train.619.ent3_0", "type": "protein", "text": [ "TR" ], "offsets": [ [ 40, 42 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7067" }, { "db_name": "hgnc", "db_id": "THRA" }, { "db_name": "uniprot", "db_id": "P10827" } ] } ]
[]
[ { "id": "1.0alpha7.train.619.coref0", "entity_ids": [ "1.0alpha7.train.619.ent0_0" ] }, { "id": "1.0alpha7.train.619.coref1", "entity_ids": [ "1.0alpha7.train.619.ent1_0" ] }, { "id": "1.0alpha7.train.619.coref2", "entity_ids": [ "1.0alpha7.train.619.ent2_0" ] }, { "id": "1.0alpha7.train.619.coref3", "entity_ids": [ "1.0alpha7.train.619.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.619.rel0s1.0alpha7.train.619.ent2_0.o1.0alpha7.train.619.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.619.ent2_0", "arg2_id": "1.0alpha7.train.619.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.619.rel1s1.0alpha7.train.619.ent0_0.o1.0alpha7.train.619.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.619.ent0_0", "arg2_id": "1.0alpha7.train.619.ent1_0", "normalized": [] } ]
1.0alpha7.train.620
4576582
[ { "id": "1.0alpha7.train.620.sent", "type": "sentence", "text": [ "Git2 is highly homologous to p95PKL; and we indeed detected ternary complexes of paxillin α/Git2/βPIX, and Git2/βPIX/PAK3." ], "offsets": [ [ 0, 122 ] ] } ]
[ { "id": "1.0alpha7.train.620.ent0_0", "type": "protein-complex", "text": [ "paxillin α/Git2/βPIX" ], "offsets": [ [ 81, 101 ] ], "normalized": [] }, { "id": "1.0alpha7.train.620.ent1_0", "type": "protein", "text": [ "βPIX" ], "offsets": [ [ 97, 101 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8874" }, { "db_name": "hgnc", "db_id": "ARHGEF7" }, { "db_name": "uniprot", "db_id": "Q14155" } ] }, { "id": "1.0alpha7.train.620.ent2_1", "type": "protein", "text": [ "βPIX" ], "offsets": [ [ 112, 116 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8874" }, { "db_name": "hgnc", "db_id": "ARHGEF7" }, { "db_name": "uniprot", "db_id": "Q14155" } ] }, { "id": "1.0alpha7.train.620.ent3_0", "type": "protein", "text": [ "paxillin" ], "offsets": [ [ 81, 89 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5829" }, { "db_name": "hgnc", "db_id": "PXN" }, { "db_name": "uniprot", "db_id": "P49023" } ] }, { "id": "1.0alpha7.train.620.ent4_0", "type": "protein", "text": [ "PAK3" ], "offsets": [ [ 117, 121 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5063" }, { "db_name": "hgnc", "db_id": "PAK3" } ] }, { "id": "1.0alpha7.train.620.ent5_0", "type": "protein-complex", "text": [ "Git2/βPIX/PAK3" ], "offsets": [ [ 107, 121 ] ], "normalized": [] }, { "id": "1.0alpha7.train.620.ent6_0", "type": "protein-isoform", "text": [ "paxillin α" ], "offsets": [ [ 81, 91 ] ], "normalized": [] }, { "id": "1.0alpha7.train.620.ent7_0", "type": "protein", "text": [ "Git2" ], "offsets": [ [ 0, 4 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "9815" }, { "db_name": "hgnc", "db_id": "GIT2" }, { "db_name": "uniprot", "db_id": "Q14161" } ] }, { "id": "1.0alpha7.train.620.ent8_1", "type": "protein", "text": [ "Git2" ], "offsets": [ [ 92, 96 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "9815" }, { "db_name": "hgnc", "db_id": "GIT2" }, { "db_name": "uniprot", "db_id": "Q14161" } ] }, { "id": "1.0alpha7.train.620.ent9_2", "type": "protein", "text": [ "Git2" ], "offsets": [ [ 107, 111 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "9815" }, { "db_name": "hgnc", "db_id": "GIT2" }, { "db_name": "uniprot", "db_id": "Q14161" } ] }, { "id": "1.0alpha7.train.620.ent10_0", "type": "protein", "text": [ "p95PKL" ], "offsets": [ [ 29, 35 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.620.coref0", "entity_ids": [ "1.0alpha7.train.620.ent0_0" ] }, { "id": "1.0alpha7.train.620.coref1", "entity_ids": [ "1.0alpha7.train.620.ent1_0", "1.0alpha7.train.620.ent2_1" ] }, { "id": "1.0alpha7.train.620.coref2", "entity_ids": [ "1.0alpha7.train.620.ent3_0" ] }, { "id": "1.0alpha7.train.620.coref3", "entity_ids": [ "1.0alpha7.train.620.ent4_0" ] }, { "id": "1.0alpha7.train.620.coref4", "entity_ids": [ "1.0alpha7.train.620.ent5_0" ] }, { "id": "1.0alpha7.train.620.coref5", "entity_ids": [ "1.0alpha7.train.620.ent6_0" ] }, { "id": "1.0alpha7.train.620.coref6", "entity_ids": [ "1.0alpha7.train.620.ent7_0", "1.0alpha7.train.620.ent8_1", "1.0alpha7.train.620.ent9_2" ] }, { "id": "1.0alpha7.train.620.coref7", "entity_ids": [ "1.0alpha7.train.620.ent10_0" ] } ]
[ { "id": "1.0alpha7.train.620.rel0s1.0alpha7.train.620.ent4_0.o1.0alpha7.train.620.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.620.ent4_0", "arg2_id": "1.0alpha7.train.620.ent6_0", "normalized": [] }, { "id": "1.0alpha7.train.620.rel1s1.0alpha7.train.620.ent3_0.o1.0alpha7.train.620.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.620.ent3_0", "arg2_id": "1.0alpha7.train.620.ent4_0", "normalized": [] } ]
1.0alpha7.train.621
24658961
[ { "id": "1.0alpha7.train.621.sent", "type": "sentence", "text": [ "In previous studies, we found that the cytological locations of chromatin entry sites, visualized as partial MSL complex binding, were very similar in msl3, mle, or mof mutants Kageyama et al. 2001, Lyman et al. 1997, Meller et al. 2000." ], "offsets": [ [ 0, 237 ] ] } ]
[ { "id": "1.0alpha7.train.621.ent0_0", "type": "protein-complex", "text": [ "MSL" ], "offsets": [ [ 109, 112 ] ], "normalized": [] }, { "id": "1.0alpha7.train.621.ent1_0", "type": "DNA", "text": [ "mle" ], "offsets": [ [ 157, 160 ] ], "normalized": [] }, { "id": "1.0alpha7.train.621.ent2_0", "type": "DNA", "text": [ "mof" ], "offsets": [ [ 165, 168 ] ], "normalized": [] }, { "id": "1.0alpha7.train.621.ent3_0", "type": "DNA", "text": [ "msl3" ], "offsets": [ [ 151, 155 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.621.coref0", "entity_ids": [ "1.0alpha7.train.621.ent0_0" ] }, { "id": "1.0alpha7.train.621.coref1", "entity_ids": [ "1.0alpha7.train.621.ent1_0" ] }, { "id": "1.0alpha7.train.621.coref2", "entity_ids": [ "1.0alpha7.train.621.ent2_0" ] }, { "id": "1.0alpha7.train.621.coref3", "entity_ids": [ "1.0alpha7.train.621.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.621.rel0s1.0alpha7.train.621.ent0_0.o1.0alpha7.train.621.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.621.ent0_0", "arg2_id": "1.0alpha7.train.621.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.621.rel1s1.0alpha7.train.621.ent0_0.o1.0alpha7.train.621.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.621.ent0_0", "arg2_id": "1.0alpha7.train.621.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.621.rel2s1.0alpha7.train.621.ent0_0.o1.0alpha7.train.621.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.621.ent0_0", "arg2_id": "1.0alpha7.train.621.ent2_0", "normalized": [] } ]
1.0alpha7.train.622
5316811
[ { "id": "1.0alpha7.train.622.sent", "type": "sentence", "text": [ " These results suggest that GSK-3beta, PKA, and PP1 bind to AKAP220 simultaneously and that they form a quaternary complex. " ], "offsets": [ [ 0, 129 ] ] } ]
[ { "id": "1.0alpha7.train.622.ent0_0", "type": "protein", "text": [ "GSK-3beta" ], "offsets": [ [ 29, 38 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2932" }, { "db_name": "hgnc", "db_id": "GSK3B" }, { "db_name": "uniprot", "db_id": "P49841" } ] }, { "id": "1.0alpha7.train.622.ent1_0", "type": "protein-complex", "text": [ "PKA" ], "offsets": [ [ 41, 44 ] ], "normalized": [] }, { "id": "1.0alpha7.train.622.ent2_0", "type": "protein", "text": [ "PP1" ], "offsets": [ [ 51, 54 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5499" }, { "db_name": "hgnc", "db_id": "PPP1CA" }, { "db_name": "uniprot", "db_id": "P62136" } ] }, { "id": "1.0alpha7.train.622.ent3_0", "type": "protein-complex", "text": [ "AKAP220" ], "offsets": [ [ 64, 71 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.622.coref0", "entity_ids": [ "1.0alpha7.train.622.ent0_0" ] }, { "id": "1.0alpha7.train.622.coref1", "entity_ids": [ "1.0alpha7.train.622.ent1_0" ] }, { "id": "1.0alpha7.train.622.coref2", "entity_ids": [ "1.0alpha7.train.622.ent2_0" ] }, { "id": "1.0alpha7.train.622.coref3", "entity_ids": [ "1.0alpha7.train.622.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.622.rel0s1.0alpha7.train.622.ent0_0.o1.0alpha7.train.622.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.622.ent0_0", "arg2_id": "1.0alpha7.train.622.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.622.rel1s1.0alpha7.train.622.ent1_0.o1.0alpha7.train.622.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.622.ent1_0", "arg2_id": "1.0alpha7.train.622.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.622.rel2s1.0alpha7.train.622.ent2_0.o1.0alpha7.train.622.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.622.ent2_0", "arg2_id": "1.0alpha7.train.622.ent3_0", "normalized": [] } ]
1.0alpha7.train.623
8385694
[ { "id": "1.0alpha7.train.623.sent", "type": "sentence", "text": [ " As detailed earlier, VASP is known to bind profilin, FP4-containing cytoskeletal proteins, and full-length VASP. " ], "offsets": [ [ 0, 119 ] ] } ]
[ { "id": "1.0alpha7.train.623.ent0_0", "type": "protein-motif", "text": [ "FP4" ], "offsets": [ [ 57, 60 ] ], "normalized": [] }, { "id": "1.0alpha7.train.623.ent1_0", "type": "protein", "text": [ "VASP" ], "offsets": [ [ 23, 27 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7408" }, { "db_name": "hgnc", "db_id": "VASP" }, { "db_name": "uniprot", "db_id": "P50552" } ] }, { "id": "1.0alpha7.train.623.ent2_1", "type": "protein", "text": [ "VASP" ], "offsets": [ [ 112, 116 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7408" }, { "db_name": "hgnc", "db_id": "VASP" }, { "db_name": "uniprot", "db_id": "P50552" } ] }, { "id": "1.0alpha7.train.623.ent3_0", "type": "protein-family", "text": [ "FP4-containing cytoskeletal proteins" ], "offsets": [ [ 57, 93 ] ], "normalized": [] }, { "id": "1.0alpha7.train.623.ent4_0", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 46, 54 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] } ]
[]
[ { "id": "1.0alpha7.train.623.coref0", "entity_ids": [ "1.0alpha7.train.623.ent0_0" ] }, { "id": "1.0alpha7.train.623.coref1", "entity_ids": [ "1.0alpha7.train.623.ent1_0", "1.0alpha7.train.623.ent2_1" ] }, { "id": "1.0alpha7.train.623.coref2", "entity_ids": [ "1.0alpha7.train.623.ent3_0" ] }, { "id": "1.0alpha7.train.623.coref3", "entity_ids": [ "1.0alpha7.train.623.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.623.rel0s1.0alpha7.train.623.ent1_0.o1.0alpha7.train.623.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent1_0", "arg2_id": "1.0alpha7.train.623.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.623.rel0s1.0alpha7.train.623.ent2_1.o1.0alpha7.train.623.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent2_1", "arg2_id": "1.0alpha7.train.623.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.623.rel1s1.0alpha7.train.623.ent1_0.o1.0alpha7.train.623.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent1_0", "arg2_id": "1.0alpha7.train.623.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.623.rel1s1.0alpha7.train.623.ent2_1.o1.0alpha7.train.623.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent2_1", "arg2_id": "1.0alpha7.train.623.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.623.rel2s1.0alpha7.train.623.ent1_0.o1.0alpha7.train.623.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent1_0", "arg2_id": "1.0alpha7.train.623.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.623.rel2s1.0alpha7.train.623.ent1_0.o1.0alpha7.train.623.ent2_1", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent1_0", "arg2_id": "1.0alpha7.train.623.ent2_1", "normalized": [] }, { "id": "1.0alpha7.train.623.rel2s1.0alpha7.train.623.ent2_1.o1.0alpha7.train.623.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent2_1", "arg2_id": "1.0alpha7.train.623.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.623.rel2s1.0alpha7.train.623.ent2_1.o1.0alpha7.train.623.ent2_1", "type": "bind", "arg1_id": "1.0alpha7.train.623.ent2_1", "arg2_id": "1.0alpha7.train.623.ent2_1", "normalized": [] } ]
1.0alpha7.train.624
1213968
[ { "id": "1.0alpha7.train.624.sent", "type": "sentence", "text": [ "We next used a combinatorial peptide library approach to identify the preferred binding motif of the SH3 domain of amphiphysin and its relation to the binding region identified in dynamin I." ], "offsets": [ [ 0, 193 ] ] } ]
[ { "id": "1.0alpha7.train.624.ent0_0", "type": "protein-domain", "text": [ "SH3" ], "offsets": [ [ 102, 105 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR001452" } ] }, { "id": "1.0alpha7.train.624.ent1_0", "type": "protein", "text": [ "amphiphysin" ], "offsets": [ [ 117, 128 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "273" }, { "db_name": "hgnc", "db_id": "AMPH" }, { "db_name": "uniprot", "db_id": "P49418" } ] }, { "id": "1.0alpha7.train.624.ent2_0", "type": "protein", "text": [ "dynamin I" ], "offsets": [ [ 183, 192 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1759" }, { "db_name": "hgnc", "db_id": "DNM1" }, { "db_name": "uniprot", "db_id": "A0A0U1RQP1" } ] } ]
[]
[ { "id": "1.0alpha7.train.624.coref0", "entity_ids": [ "1.0alpha7.train.624.ent0_0" ] }, { "id": "1.0alpha7.train.624.coref1", "entity_ids": [ "1.0alpha7.train.624.ent1_0" ] }, { "id": "1.0alpha7.train.624.coref2", "entity_ids": [ "1.0alpha7.train.624.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.624.rel0s1.0alpha7.train.624.ent1_0.o1.0alpha7.train.624.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.624.ent1_0", "arg2_id": "1.0alpha7.train.624.ent2_0", "normalized": [] } ]
1.0alpha7.train.625
19382486
[ { "id": "1.0alpha7.train.625.sent", "type": "sentence", "text": [ " However, recombinant mutant ORC, which was defective in the ATP binding Walker A motif of ORC1, did not bind the 304-bp ori fragment regardless of whether ATP- -S was added (data not shown). " ], "offsets": [ [ 0, 197 ] ] } ]
[ { "id": "1.0alpha7.train.625.ent0_0", "type": "protein-motif", "text": [ "Walker A" ], "offsets": [ [ 75, 83 ] ], "normalized": [] }, { "id": "1.0alpha7.train.625.ent1_0", "type": "protein", "text": [ "ORC1" ], "offsets": [ [ 94, 98 ] ], "normalized": [] }, { "id": "1.0alpha7.train.625.ent2_0", "type": "protein-complex", "text": [ "ORC" ], "offsets": [ [ 30, 33 ] ], "normalized": [] }, { "id": "1.0alpha7.train.625.ent3_0", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 63, 66 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.625.ent4_1", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 160, 163 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.625.ent5_0", "type": "protein", "text": [ "mutant ORC" ], "offsets": [ [ 23, 33 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.625.coref0", "entity_ids": [ "1.0alpha7.train.625.ent0_0" ] }, { "id": "1.0alpha7.train.625.coref1", "entity_ids": [ "1.0alpha7.train.625.ent1_0" ] }, { "id": "1.0alpha7.train.625.coref2", "entity_ids": [ "1.0alpha7.train.625.ent2_0" ] }, { "id": "1.0alpha7.train.625.coref3", "entity_ids": [ "1.0alpha7.train.625.ent3_0", "1.0alpha7.train.625.ent4_1" ] }, { "id": "1.0alpha7.train.625.coref4", "entity_ids": [ "1.0alpha7.train.625.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.625.rel0s1.0alpha7.train.625.ent1_0.o1.0alpha7.train.625.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.625.ent1_0", "arg2_id": "1.0alpha7.train.625.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.625.rel0s1.0alpha7.train.625.ent1_0.o1.0alpha7.train.625.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.625.ent1_0", "arg2_id": "1.0alpha7.train.625.ent4_1", "normalized": [] } ]
1.0alpha7.train.626
1570383
[ { "id": "1.0alpha7.train.626.sent", "type": "sentence", "text": [ " When heat-shocked cells were also treated with rapamycin, an additive effect was observed such that rapamycin increased further both the amount of 4E-BP1 bound to eIF4E and the downward band shift caused by heat shock. " ], "offsets": [ [ 0, 224 ] ] } ]
[ { "id": "1.0alpha7.train.626.ent0_0", "type": "protein", "text": [ "eIF4E" ], "offsets": [ [ 166, 171 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1977" }, { "db_name": "hgnc", "db_id": "EIF4E" }, { "db_name": "uniprot", "db_id": "P06730" } ] }, { "id": "1.0alpha7.train.626.ent1_0", "type": "drug", "text": [ "rapamycin" ], "offsets": [ [ 48, 57 ] ], "normalized": [ { "db_name": "DrugBank", "db_id": "DB00877" } ] }, { "id": "1.0alpha7.train.626.ent2_1", "type": "drug", "text": [ "rapamycin" ], "offsets": [ [ 101, 110 ] ], "normalized": [ { "db_name": "DrugBank", "db_id": "DB00877" } ] }, { "id": "1.0alpha7.train.626.ent3_0", "type": "protein", "text": [ "4E-BP1" ], "offsets": [ [ 149, 155 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1978" }, { "db_name": "hgnc", "db_id": "EIF4EBP1" }, { "db_name": "uniprot", "db_id": "Q13541" } ] } ]
[]
[ { "id": "1.0alpha7.train.626.coref0", "entity_ids": [ "1.0alpha7.train.626.ent0_0" ] }, { "id": "1.0alpha7.train.626.coref1", "entity_ids": [ "1.0alpha7.train.626.ent1_0", "1.0alpha7.train.626.ent2_1" ] }, { "id": "1.0alpha7.train.626.coref2", "entity_ids": [ "1.0alpha7.train.626.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.626.rel0s1.0alpha7.train.626.ent0_0.o1.0alpha7.train.626.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.626.ent0_0", "arg2_id": "1.0alpha7.train.626.ent3_0", "normalized": [] } ]
1.0alpha7.train.627
11927887
[ { "id": "1.0alpha7.train.627.sent", "type": "sentence", "text": [ "The EH domain of POB1 bound directly to Epsin and Eps15." ], "offsets": [ [ 0, 60 ] ] } ]
[ { "id": "1.0alpha7.train.627.ent0_0", "type": "protein", "text": [ "POB1" ], "offsets": [ [ 19, 23 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "9185" }, { "db_name": "hgnc", "db_id": "REPS2" }, { "db_name": "uniprot", "db_id": "Q8NFH8" } ] }, { "id": "1.0alpha7.train.627.ent1_0", "type": "protein", "text": [ "Eps15" ], "offsets": [ [ 54, 59 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2060" }, { "db_name": "hgnc", "db_id": "EPS15" }, { "db_name": "uniprot", "db_id": "P42566" } ] }, { "id": "1.0alpha7.train.627.ent2_0", "type": "protein-family", "text": [ "Epsin" ], "offsets": [ [ 43, 48 ] ], "normalized": [] }, { "id": "1.0alpha7.train.627.ent3_0", "type": "protein-domain", "text": [ "EH" ], "offsets": [ [ 5, 7 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.627.coref0", "entity_ids": [ "1.0alpha7.train.627.ent0_0" ] }, { "id": "1.0alpha7.train.627.coref1", "entity_ids": [ "1.0alpha7.train.627.ent1_0" ] }, { "id": "1.0alpha7.train.627.coref2", "entity_ids": [ "1.0alpha7.train.627.ent2_0" ] }, { "id": "1.0alpha7.train.627.coref3", "entity_ids": [ "1.0alpha7.train.627.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.627.rel0s1.0alpha7.train.627.ent0_0.o1.0alpha7.train.627.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.627.ent0_0", "arg2_id": "1.0alpha7.train.627.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.627.rel1s1.0alpha7.train.627.ent0_0.o1.0alpha7.train.627.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.627.ent0_0", "arg2_id": "1.0alpha7.train.627.ent1_0", "normalized": [] } ]
1.0alpha7.train.628
18134608
[ { "id": "1.0alpha7.train.628.sent", "type": "sentence", "text": [ " Cyclin B1 import was stimulated by importin-β but insensitive to IBB, the amino-terminal domain of importin-α that binds importin-β and inhibits importin-α–mediated import α/β (Moore et al., 1999 blue right-pointing triangle; Takizawa et al., 1999 blue right-pointing triangle; Jackman, Kubota, Den Elzen, Hagting, and Pines, unpublished results)." ], "offsets": [ [ 0, 348 ] ] } ]
[ { "id": "1.0alpha7.train.628.ent0_0", "type": "protein-family", "text": [ "importin-β" ], "offsets": [ [ 36, 46 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR040122" } ] }, { "id": "1.0alpha7.train.628.ent1_1", "type": "protein-family", "text": [ "importin-β" ], "offsets": [ [ 122, 132 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR040122" } ] }, { "id": "1.0alpha7.train.628.ent2_0", "type": "protein", "text": [ "Cyclin B1" ], "offsets": [ [ 1, 10 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "891" }, { "db_name": "hgnc", "db_id": "CCNB1" }, { "db_name": "uniprot", "db_id": "P14635" } ] }, { "id": "1.0alpha7.train.628.ent3_0", "type": "protein-domain", "text": [ "IBB" ], "offsets": [ [ 66, 69 ] ], "normalized": [] }, { "id": "1.0alpha7.train.628.ent4_0", "type": "protein-complex", "text": [ "α/β" ], "offsets": [ [ 173, 176 ] ], "normalized": [] }, { "id": "1.0alpha7.train.628.ent5_0", "type": "protein-family", "text": [ "importin-α" ], "offsets": [ [ 100, 110 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR024931" } ] }, { "id": "1.0alpha7.train.628.ent6_1", "type": "protein-family", "text": [ "importin-α" ], "offsets": [ [ 146, 156 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR024931" } ] } ]
[]
[ { "id": "1.0alpha7.train.628.coref0", "entity_ids": [ "1.0alpha7.train.628.ent0_0", "1.0alpha7.train.628.ent1_1" ] }, { "id": "1.0alpha7.train.628.coref1", "entity_ids": [ "1.0alpha7.train.628.ent2_0" ] }, { "id": "1.0alpha7.train.628.coref2", "entity_ids": [ "1.0alpha7.train.628.ent3_0" ] }, { "id": "1.0alpha7.train.628.coref3", "entity_ids": [ "1.0alpha7.train.628.ent4_0" ] }, { "id": "1.0alpha7.train.628.coref4", "entity_ids": [ "1.0alpha7.train.628.ent5_0", "1.0alpha7.train.628.ent6_1" ] } ]
[ { "id": "1.0alpha7.train.628.rel0s1.0alpha7.train.628.ent0_0.o1.0alpha7.train.628.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.628.ent0_0", "arg2_id": "1.0alpha7.train.628.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.628.rel0s1.0alpha7.train.628.ent0_0.o1.0alpha7.train.628.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.628.ent0_0", "arg2_id": "1.0alpha7.train.628.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.628.rel0s1.0alpha7.train.628.ent1_1.o1.0alpha7.train.628.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.628.ent1_1", "arg2_id": "1.0alpha7.train.628.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.628.rel0s1.0alpha7.train.628.ent1_1.o1.0alpha7.train.628.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.628.ent1_1", "arg2_id": "1.0alpha7.train.628.ent6_1", "normalized": [] } ]
1.0alpha7.train.629
20373691
[ { "id": "1.0alpha7.train.629.sent", "type": "sentence", "text": [ "Binding of Tcf with CBP ( 19) or CtBP ( 20) can lead to repression of the Wnt/Wingless response." ], "offsets": [ [ 0, 99 ] ] } ]
[ { "id": "1.0alpha7.train.629.ent0_0", "type": "protein-family", "text": [ "Tcf" ], "offsets": [ [ 12, 15 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR024940" } ] }, { "id": "1.0alpha7.train.629.ent1_0", "type": "protein", "text": [ "CBP" ], "offsets": [ [ 22, 25 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1387" }, { "db_name": "hgnc", "db_id": "CREBBP" }, { "db_name": "uniprot", "db_id": "Q92793" } ] }, { "id": "1.0alpha7.train.629.ent2_0", "type": "protein", "text": [ "CtBP" ], "offsets": [ [ 36, 40 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q13363" } ] }, { "id": "1.0alpha7.train.629.ent3_0", "type": "protein-family", "text": [ "Wnt/Wingless" ], "offsets": [ [ 77, 89 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.629.coref0", "entity_ids": [ "1.0alpha7.train.629.ent0_0" ] }, { "id": "1.0alpha7.train.629.coref1", "entity_ids": [ "1.0alpha7.train.629.ent1_0" ] }, { "id": "1.0alpha7.train.629.coref2", "entity_ids": [ "1.0alpha7.train.629.ent2_0" ] }, { "id": "1.0alpha7.train.629.coref3", "entity_ids": [ "1.0alpha7.train.629.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.629.rel0s1.0alpha7.train.629.ent0_0.o1.0alpha7.train.629.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.629.ent0_0", "arg2_id": "1.0alpha7.train.629.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.629.rel1s1.0alpha7.train.629.ent0_0.o1.0alpha7.train.629.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.629.ent0_0", "arg2_id": "1.0alpha7.train.629.ent2_0", "normalized": [] } ]
1.0alpha7.train.630
3506691
[ { "id": "1.0alpha7.train.630.sent", "type": "sentence", "text": [ "Tcf-4 is a nuclear protein that binds to β-catenin, and hTcf-4-(1–80) interacts directly with the Armadillo repeats of β-catenin (7, 8)." ], "offsets": [ [ 0, 136 ] ] } ]
[ { "id": "1.0alpha7.train.630.ent0_0", "type": "protein-family", "text": [ "β-catenin" ], "offsets": [ [ 41, 50 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR013284" } ] }, { "id": "1.0alpha7.train.630.ent1_1", "type": "protein-family", "text": [ "β-catenin" ], "offsets": [ [ 119, 128 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR013284" } ] }, { "id": "1.0alpha7.train.630.ent2_0", "type": "protein-region", "text": [ "hTcf-4-(1–80)" ], "offsets": [ [ 56, 69 ] ], "normalized": [] }, { "id": "1.0alpha7.train.630.ent3_0", "type": "protein-region", "text": [ "Armadillo repeats" ], "offsets": [ [ 98, 115 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR000225" } ] }, { "id": "1.0alpha7.train.630.ent4_0", "type": "protein", "text": [ "Tcf-4" ], "offsets": [ [ 0, 5 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6925" }, { "db_name": "hgnc", "db_id": "TCF4" }, { "db_name": "uniprot", "db_id": "P15884" } ] }, { "id": "1.0alpha7.train.630.ent5_0", "type": "protein", "text": [ "hTcf-4" ], "offsets": [ [ 56, 62 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6934" }, { "db_name": "hgnc", "db_id": "TCF7L2" }, { "db_name": "uniprot", "db_id": "Q9NQB0" } ] } ]
[]
[ { "id": "1.0alpha7.train.630.coref0", "entity_ids": [ "1.0alpha7.train.630.ent0_0", "1.0alpha7.train.630.ent1_1" ] }, { "id": "1.0alpha7.train.630.coref1", "entity_ids": [ "1.0alpha7.train.630.ent2_0" ] }, { "id": "1.0alpha7.train.630.coref2", "entity_ids": [ "1.0alpha7.train.630.ent3_0" ] }, { "id": "1.0alpha7.train.630.coref3", "entity_ids": [ "1.0alpha7.train.630.ent4_0" ] }, { "id": "1.0alpha7.train.630.coref4", "entity_ids": [ "1.0alpha7.train.630.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.630.rel0s1.0alpha7.train.630.ent0_0.o1.0alpha7.train.630.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.630.ent0_0", "arg2_id": "1.0alpha7.train.630.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.630.rel0s1.0alpha7.train.630.ent1_1.o1.0alpha7.train.630.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.630.ent1_1", "arg2_id": "1.0alpha7.train.630.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.630.rel1s1.0alpha7.train.630.ent2_0.o1.0alpha7.train.630.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.630.ent2_0", "arg2_id": "1.0alpha7.train.630.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.630.rel2s1.0alpha7.train.630.ent3_0.o1.0alpha7.train.630.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.630.ent3_0", "arg2_id": "1.0alpha7.train.630.ent5_0", "normalized": [] } ]
1.0alpha7.train.631
6870589
[ { "id": "1.0alpha7.train.631.sent", "type": "sentence", "text": [ "Binding of actin to profilin was performed by using glutathione S-transferase fusion protein with human profilin [glutathione S-transferase (GST)-profilin coupled to glutathione Sepharose 4B beads (Amersham Pharmacia)." ], "offsets": [ [ 0, 222 ] ] } ]
[ { "id": "1.0alpha7.train.631.ent0_0", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 145, 148 ] ], "normalized": [] }, { "id": "1.0alpha7.train.631.ent1_0", "type": "experiment-tag", "text": [ "glutathione S-transferase" ], "offsets": [ [ 55, 80 ] ], "normalized": [] }, { "id": "1.0alpha7.train.631.ent2_1", "type": "experiment-tag", "text": [ "glutathione S-transferase" ], "offsets": [ [ 118, 143 ] ], "normalized": [] }, { "id": "1.0alpha7.train.631.ent3_0", "type": "protein", "text": [ "actin" ], "offsets": [ [ 12, 17 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "58" }, { "db_name": "hgnc", "db_id": "ACTA1" }, { "db_name": "uniprot", "db_id": "P68133" } ] }, { "id": "1.0alpha7.train.631.ent4_0", "type": "reagent", "text": [ "glutathione Sepharose 4B beads" ], "offsets": [ [ 170, 200 ] ], "normalized": [] }, { "id": "1.0alpha7.train.631.ent5_0", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 22, 30 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] }, { "id": "1.0alpha7.train.631.ent6_1", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 108, 116 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] }, { "id": "1.0alpha7.train.631.ent7_2", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 150, 158 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] } ]
[]
[ { "id": "1.0alpha7.train.631.coref0", "entity_ids": [ "1.0alpha7.train.631.ent0_0", "1.0alpha7.train.631.ent1_0", "1.0alpha7.train.631.ent2_1" ] }, { "id": "1.0alpha7.train.631.coref1", "entity_ids": [ "1.0alpha7.train.631.ent3_0" ] }, { "id": "1.0alpha7.train.631.coref2", "entity_ids": [ "1.0alpha7.train.631.ent4_0" ] }, { "id": "1.0alpha7.train.631.coref3", "entity_ids": [ "1.0alpha7.train.631.ent5_0", "1.0alpha7.train.631.ent6_1", "1.0alpha7.train.631.ent7_2" ] } ]
[ { "id": "1.0alpha7.train.631.rel0s1.0alpha7.train.631.ent3_0.o1.0alpha7.train.631.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.631.ent3_0", "arg2_id": "1.0alpha7.train.631.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.631.rel0s1.0alpha7.train.631.ent3_0.o1.0alpha7.train.631.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.631.ent3_0", "arg2_id": "1.0alpha7.train.631.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.631.rel0s1.0alpha7.train.631.ent3_0.o1.0alpha7.train.631.ent7_2", "type": "bind", "arg1_id": "1.0alpha7.train.631.ent3_0", "arg2_id": "1.0alpha7.train.631.ent7_2", "normalized": [] } ]
1.0alpha7.train.632
23645886
[ { "id": "1.0alpha7.train.632.sent", "type": "sentence", "text": [ " CREB binds to the cAMP response element ( CRE) present in many genes and, when phosphorylated, alters their transcription (Montminy, 1997 ; Shaywitz and Greenberg, 1999 ). " ], "offsets": [ [ 0, 176 ] ] } ]
[ { "id": "1.0alpha7.train.632.ent0_0", "type": "DNA", "text": [ "cAMP response element" ], "offsets": [ [ 19, 40 ] ], "normalized": [] }, { "id": "1.0alpha7.train.632.ent1_0", "type": "DNA", "text": [ "CRE" ], "offsets": [ [ 43, 46 ] ], "normalized": [] }, { "id": "1.0alpha7.train.632.ent2_0", "type": "protein", "text": [ "CREB" ], "offsets": [ [ 1, 5 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1385" }, { "db_name": "hgnc", "db_id": "CREB1" }, { "db_name": "uniprot", "db_id": "P16220" } ] } ]
[]
[ { "id": "1.0alpha7.train.632.coref0", "entity_ids": [ "1.0alpha7.train.632.ent0_0", "1.0alpha7.train.632.ent1_0" ] }, { "id": "1.0alpha7.train.632.coref1", "entity_ids": [ "1.0alpha7.train.632.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.632.rel0s1.0alpha7.train.632.ent0_0.o1.0alpha7.train.632.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.632.ent0_0", "arg2_id": "1.0alpha7.train.632.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.632.rel0s1.0alpha7.train.632.ent1_0.o1.0alpha7.train.632.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.632.ent1_0", "arg2_id": "1.0alpha7.train.632.ent2_0", "normalized": [] } ]
1.0alpha7.train.633
23643822
[ { "id": "1.0alpha7.train.633.sent", "type": "sentence", "text": [ " Moreover, our in vitro phosphorylation results suggest that binding of dSlo to PKAc does not prevent the enzyme from phosphorylating its substrates. " ], "offsets": [ [ 0, 154 ] ] } ]
[ { "id": "1.0alpha7.train.633.ent0_0", "type": "protein", "text": [ "dSlo" ], "offsets": [ [ 74, 78 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q03720" } ] }, { "id": "1.0alpha7.train.633.ent1_0", "type": "protein", "text": [ "PKAc" ], "offsets": [ [ 83, 87 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5566" }, { "db_name": "hgnc", "db_id": "PRKACA" }, { "db_name": "uniprot", "db_id": "P17612" } ] } ]
[]
[ { "id": "1.0alpha7.train.633.coref0", "entity_ids": [ "1.0alpha7.train.633.ent0_0" ] }, { "id": "1.0alpha7.train.633.coref1", "entity_ids": [ "1.0alpha7.train.633.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.633.rel0s1.0alpha7.train.633.ent0_0.o1.0alpha7.train.633.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.633.ent0_0", "arg2_id": "1.0alpha7.train.633.ent1_0", "normalized": [] } ]
1.0alpha7.train.634
3194752
[ { "id": "1.0alpha7.train.634.sent", "type": "sentence", "text": [ "Overexpression in Chinese hamster ovary cells of an amphiphysin 1 fragment that binds both AP-2 and clathrin resulted in a segregation of clathrin, which acquired a diffuse distribution, from AP-2, which accumulated at patches also positive for Eps15." ], "offsets": [ [ 0, 251 ] ] } ]
[ { "id": "1.0alpha7.train.634.ent0_0", "type": "protein", "text": [ "clathrin" ], "offsets": [ [ 100, 108 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1211" }, { "db_name": "hgnc", "db_id": "CLTA" }, { "db_name": "uniprot", "db_id": "P09496" } ] }, { "id": "1.0alpha7.train.634.ent1_1", "type": "protein", "text": [ "clathrin" ], "offsets": [ [ 138, 146 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1211" }, { "db_name": "hgnc", "db_id": "CLTA" }, { "db_name": "uniprot", "db_id": "P09496" } ] }, { "id": "1.0alpha7.train.634.ent2_0", "type": "protein-isoform", "text": [ "amphiphysin 1" ], "offsets": [ [ 52, 65 ] ], "normalized": [] }, { "id": "1.0alpha7.train.634.ent3_0", "type": "protein", "text": [ "amphiphysin" ], "offsets": [ [ 52, 63 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "273" }, { "db_name": "hgnc", "db_id": "AMPH" }, { "db_name": "uniprot", "db_id": "P49418" } ] }, { "id": "1.0alpha7.train.634.ent4_0", "type": "protein", "text": [ "Eps15" ], "offsets": [ [ 245, 250 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2060" }, { "db_name": "hgnc", "db_id": "EPS15" }, { "db_name": "uniprot", "db_id": "P42566" } ] }, { "id": "1.0alpha7.train.634.ent5_0", "type": "protein-complex", "text": [ "AP-2" ], "offsets": [ [ 91, 95 ] ], "normalized": [] }, { "id": "1.0alpha7.train.634.ent6_1", "type": "protein-complex", "text": [ "AP-2" ], "offsets": [ [ 192, 196 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.634.coref0", "entity_ids": [ "1.0alpha7.train.634.ent0_0", "1.0alpha7.train.634.ent1_1" ] }, { "id": "1.0alpha7.train.634.coref1", "entity_ids": [ "1.0alpha7.train.634.ent2_0" ] }, { "id": "1.0alpha7.train.634.coref2", "entity_ids": [ "1.0alpha7.train.634.ent3_0" ] }, { "id": "1.0alpha7.train.634.coref3", "entity_ids": [ "1.0alpha7.train.634.ent4_0" ] }, { "id": "1.0alpha7.train.634.coref4", "entity_ids": [ "1.0alpha7.train.634.ent5_0", "1.0alpha7.train.634.ent6_1" ] } ]
[ { "id": "1.0alpha7.train.634.rel0s1.0alpha7.train.634.ent2_0.o1.0alpha7.train.634.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent2_0", "arg2_id": "1.0alpha7.train.634.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.634.rel0s1.0alpha7.train.634.ent2_0.o1.0alpha7.train.634.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent2_0", "arg2_id": "1.0alpha7.train.634.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.634.rel1s1.0alpha7.train.634.ent0_0.o1.0alpha7.train.634.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent0_0", "arg2_id": "1.0alpha7.train.634.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.634.rel1s1.0alpha7.train.634.ent1_1.o1.0alpha7.train.634.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent1_1", "arg2_id": "1.0alpha7.train.634.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.634.rel2s1.0alpha7.train.634.ent3_0.o1.0alpha7.train.634.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent3_0", "arg2_id": "1.0alpha7.train.634.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.634.rel2s1.0alpha7.train.634.ent3_0.o1.0alpha7.train.634.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent3_0", "arg2_id": "1.0alpha7.train.634.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.634.rel3s1.0alpha7.train.634.ent0_0.o1.0alpha7.train.634.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent0_0", "arg2_id": "1.0alpha7.train.634.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.634.rel3s1.0alpha7.train.634.ent1_1.o1.0alpha7.train.634.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.634.ent1_1", "arg2_id": "1.0alpha7.train.634.ent3_0", "normalized": [] } ]
1.0alpha7.train.635
4311889
[ { "id": "1.0alpha7.train.635.sent", "type": "sentence", "text": [ " However, addition of a cold polypyrimidinic RNA (UCUU)3 did not have any effect on the binding of GST-TDP43 to (UG)12 (Fig. 1 B), confirming the high specificity of TDP-43 binding to UG-repeated motifs. " ], "offsets": [ [ 0, 209 ] ] } ]
[ { "id": "1.0alpha7.train.635.ent0_0", "type": "protein", "text": [ "TDP43" ], "offsets": [ [ 104, 109 ] ], "normalized": [] }, { "id": "1.0alpha7.train.635.ent1_0", "type": "experimental-construct", "text": [ "GST-TDP43" ], "offsets": [ [ 100, 109 ] ], "normalized": [] }, { "id": "1.0alpha7.train.635.ent2_0", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 100, 103 ] ], "normalized": [] }, { "id": "1.0alpha7.train.635.ent3_0", "type": "RNA", "text": [ "(UG)12" ], "offsets": [ [ 113, 119 ] ], "normalized": [] }, { "id": "1.0alpha7.train.635.ent4_0", "type": "RNA", "text": [ "(UCUU)3" ], "offsets": [ [ 49, 56 ] ], "normalized": [] }, { "id": "1.0alpha7.train.635.ent5_0", "type": "RNA", "text": [ "cold polypyrimidinic RNA" ], "offsets": [ [ 24, 48 ] ], "normalized": [] }, { "id": "1.0alpha7.train.635.ent6_0", "type": "RNA", "text": [ "UG-repeated motifs" ], "offsets": [ [ 188, 206 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.635.coref0", "entity_ids": [ "1.0alpha7.train.635.ent0_0" ] }, { "id": "1.0alpha7.train.635.coref1", "entity_ids": [ "1.0alpha7.train.635.ent1_0" ] }, { "id": "1.0alpha7.train.635.coref2", "entity_ids": [ "1.0alpha7.train.635.ent2_0" ] }, { "id": "1.0alpha7.train.635.coref3", "entity_ids": [ "1.0alpha7.train.635.ent3_0" ] }, { "id": "1.0alpha7.train.635.coref4", "entity_ids": [ "1.0alpha7.train.635.ent4_0" ] }, { "id": "1.0alpha7.train.635.coref5", "entity_ids": [ "1.0alpha7.train.635.ent5_0" ] }, { "id": "1.0alpha7.train.635.coref6", "entity_ids": [ "1.0alpha7.train.635.ent6_0" ] } ]
[ { "id": "1.0alpha7.train.635.rel0s1.0alpha7.train.635.ent0_0.o1.0alpha7.train.635.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.635.ent0_0", "arg2_id": "1.0alpha7.train.635.ent6_0", "normalized": [] } ]
1.0alpha7.train.636
5999528
[ { "id": "1.0alpha7.train.636.sent", "type": "sentence", "text": [ "The kinetics provide a detailed picture of the threefold difference in affinity observed for estriol binding to beta ( KD = 5.6 nM) and alpha ( KD = 18 nM) isoforms of the receptor." ], "offsets": [ [ 0, 184 ] ] } ]
[ { "id": "1.0alpha7.train.636.ent0_0", "type": "protein-isoform", "text": [ "alpha" ], "offsets": [ [ 138, 143 ] ], "normalized": [] }, { "id": "1.0alpha7.train.636.ent1_0", "type": "protein-isoform", "text": [ "beta" ], "offsets": [ [ 114, 118 ] ], "normalized": [] }, { "id": "1.0alpha7.train.636.ent2_0", "type": "chemical", "text": [ "estriol" ], "offsets": [ [ 94, 101 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5756" } ] } ]
[]
[ { "id": "1.0alpha7.train.636.coref0", "entity_ids": [ "1.0alpha7.train.636.ent0_0" ] }, { "id": "1.0alpha7.train.636.coref1", "entity_ids": [ "1.0alpha7.train.636.ent1_0" ] }, { "id": "1.0alpha7.train.636.coref2", "entity_ids": [ "1.0alpha7.train.636.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.636.rel0s1.0alpha7.train.636.ent1_0.o1.0alpha7.train.636.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.636.ent1_0", "arg2_id": "1.0alpha7.train.636.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.636.rel1s1.0alpha7.train.636.ent0_0.o1.0alpha7.train.636.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.636.ent0_0", "arg2_id": "1.0alpha7.train.636.ent2_0", "normalized": [] } ]
1.0alpha7.train.637
25396938
[ { "id": "1.0alpha7.train.637.sent", "type": "sentence", "text": [ "35S-labeled Arr2 bound to PIP3 beads but not to control beads (Figure 2D)." ], "offsets": [ [ 0, 77 ] ] } ]
[ { "id": "1.0alpha7.train.637.ent0_0", "type": "reagent", "text": [ "PIP3 beads" ], "offsets": [ [ 27, 37 ] ], "normalized": [] }, { "id": "1.0alpha7.train.637.ent1_0", "type": "experiment-tag", "text": [ "35S-labeled" ], "offsets": [ [ 0, 11 ] ], "normalized": [] }, { "id": "1.0alpha7.train.637.ent2_0", "type": "chemical", "text": [ "PIP3" ], "offsets": [ [ 27, 31 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "53480353" } ] }, { "id": "1.0alpha7.train.637.ent3_0", "type": "experimental-construct", "text": [ "35S-labeled Arr2" ], "offsets": [ [ 0, 16 ] ], "normalized": [] }, { "id": "1.0alpha7.train.637.ent4_0", "type": "protein", "text": [ "Arr2" ], "offsets": [ [ 12, 16 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "409" }, { "db_name": "hgnc", "db_id": "ARRB2" }, { "db_name": "uniprot", "db_id": "P32121" } ] }, { "id": "1.0alpha7.train.637.ent5_0", "type": "reagent", "text": [ "control beads" ], "offsets": [ [ 49, 62 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.637.coref0", "entity_ids": [ "1.0alpha7.train.637.ent0_0" ] }, { "id": "1.0alpha7.train.637.coref1", "entity_ids": [ "1.0alpha7.train.637.ent1_0" ] }, { "id": "1.0alpha7.train.637.coref2", "entity_ids": [ "1.0alpha7.train.637.ent2_0" ] }, { "id": "1.0alpha7.train.637.coref3", "entity_ids": [ "1.0alpha7.train.637.ent3_0" ] }, { "id": "1.0alpha7.train.637.coref4", "entity_ids": [ "1.0alpha7.train.637.ent4_0" ] }, { "id": "1.0alpha7.train.637.coref5", "entity_ids": [ "1.0alpha7.train.637.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.637.rel0s1.0alpha7.train.637.ent0_0.o1.0alpha7.train.637.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.637.ent0_0", "arg2_id": "1.0alpha7.train.637.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.637.rel1s1.0alpha7.train.637.ent3_0.o1.0alpha7.train.637.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.637.ent3_0", "arg2_id": "1.0alpha7.train.637.ent5_0", "normalized": [] } ]
1.0alpha7.train.638
1077088
[ { "id": "1.0alpha7.train.638.sent", "type": "sentence", "text": [ " Binding of 125I-bFGF to ECM produced in the presence of 30 mM chlorate was inhibited by 50-60%." ], "offsets": [ [ 0, 96 ] ] } ]
[ { "id": "1.0alpha7.train.638.ent0_0", "type": "organelle", "text": [ "ECM" ], "offsets": [ [ 25, 28 ] ], "normalized": [] }, { "id": "1.0alpha7.train.638.ent1_0", "type": "protein", "text": [ "bFGF" ], "offsets": [ [ 17, 21 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2247" }, { "db_name": "hgnc", "db_id": "FGF2" }, { "db_name": "uniprot", "db_id": "P09038" } ] }, { "id": "1.0alpha7.train.638.ent2_0", "type": "reagent", "text": [ "chlorate" ], "offsets": [ [ 63, 71 ] ], "normalized": [] }, { "id": "1.0alpha7.train.638.ent3_0", "type": "experimental-construct", "text": [ "125I-bFGF" ], "offsets": [ [ 12, 21 ] ], "normalized": [] }, { "id": "1.0alpha7.train.638.ent4_0", "type": "experiment-tag", "text": [ "125I" ], "offsets": [ [ 12, 16 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.638.coref0", "entity_ids": [ "1.0alpha7.train.638.ent0_0" ] }, { "id": "1.0alpha7.train.638.coref1", "entity_ids": [ "1.0alpha7.train.638.ent1_0" ] }, { "id": "1.0alpha7.train.638.coref2", "entity_ids": [ "1.0alpha7.train.638.ent2_0" ] }, { "id": "1.0alpha7.train.638.coref3", "entity_ids": [ "1.0alpha7.train.638.ent3_0" ] }, { "id": "1.0alpha7.train.638.coref4", "entity_ids": [ "1.0alpha7.train.638.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.638.rel0s1.0alpha7.train.638.ent0_0.o1.0alpha7.train.638.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.638.ent0_0", "arg2_id": "1.0alpha7.train.638.ent3_0", "normalized": [] } ]
1.0alpha7.train.639
1425792
[ { "id": "1.0alpha7.train.639.sent", "type": "sentence", "text": [ " These data suggest that the isolated mSos1 PH domain shows a specific interaction with PI(4,5)P2 and binds weakly to PI(4)P. " ], "offsets": [ [ 0, 128 ] ] } ]
[ { "id": "1.0alpha7.train.639.ent0_0", "type": "protein", "text": [ "mSos1" ], "offsets": [ [ 38, 43 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q62245" } ] }, { "id": "1.0alpha7.train.639.ent1_0", "type": "chemical", "text": [ "PI(4)P" ], "offsets": [ [ 119, 125 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "46891797" } ] }, { "id": "1.0alpha7.train.639.ent2_0", "type": "protein-domain", "text": [ "PH" ], "offsets": [ [ 45, 47 ] ], "normalized": [] }, { "id": "1.0alpha7.train.639.ent3_0", "type": "chemical", "text": [ "PI(4,5)P2" ], "offsets": [ [ 89, 98 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "3013834" } ] } ]
[]
[ { "id": "1.0alpha7.train.639.coref0", "entity_ids": [ "1.0alpha7.train.639.ent0_0" ] }, { "id": "1.0alpha7.train.639.coref1", "entity_ids": [ "1.0alpha7.train.639.ent1_0" ] }, { "id": "1.0alpha7.train.639.coref2", "entity_ids": [ "1.0alpha7.train.639.ent2_0" ] }, { "id": "1.0alpha7.train.639.coref3", "entity_ids": [ "1.0alpha7.train.639.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.639.rel0s1.0alpha7.train.639.ent0_0.o1.0alpha7.train.639.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.639.ent0_0", "arg2_id": "1.0alpha7.train.639.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.639.rel1s1.0alpha7.train.639.ent0_0.o1.0alpha7.train.639.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.639.ent0_0", "arg2_id": "1.0alpha7.train.639.ent1_0", "normalized": [] } ]
1.0alpha7.train.640
79307
[ { "id": "1.0alpha7.train.640.sent", "type": "sentence", "text": [ "Toth et al. ( 27) have shown that in Ad-infected cells transcription factors ML transcription factor and transcription factor IID bind to Ad ML promoter only in the late stage of infection." ], "offsets": [ [ 0, 197 ] ] } ]
[ { "id": "1.0alpha7.train.640.ent0_0", "type": "DNA", "text": [ "ML promoter" ], "offsets": [ [ 147, 158 ] ], "normalized": [] }, { "id": "1.0alpha7.train.640.ent1_0", "type": "protein-complex", "text": [ "transcription factor IID" ], "offsets": [ [ 111, 135 ] ], "normalized": [] }, { "id": "1.0alpha7.train.640.ent2_0", "type": "cell", "text": [ "Ad" ], "offsets": [ [ 40, 42 ] ], "normalized": [] }, { "id": "1.0alpha7.train.640.ent3_1", "type": "cell", "text": [ "Ad" ], "offsets": [ [ 144, 146 ] ], "normalized": [] }, { "id": "1.0alpha7.train.640.ent4_0", "type": "protein", "text": [ "ML transcription factor" ], "offsets": [ [ 81, 104 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.640.coref0", "entity_ids": [ "1.0alpha7.train.640.ent0_0" ] }, { "id": "1.0alpha7.train.640.coref1", "entity_ids": [ "1.0alpha7.train.640.ent1_0" ] }, { "id": "1.0alpha7.train.640.coref2", "entity_ids": [ "1.0alpha7.train.640.ent2_0", "1.0alpha7.train.640.ent3_1" ] }, { "id": "1.0alpha7.train.640.coref3", "entity_ids": [ "1.0alpha7.train.640.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.640.rel0s1.0alpha7.train.640.ent0_0.o1.0alpha7.train.640.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.640.ent0_0", "arg2_id": "1.0alpha7.train.640.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.640.rel1s1.0alpha7.train.640.ent0_0.o1.0alpha7.train.640.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.640.ent0_0", "arg2_id": "1.0alpha7.train.640.ent1_0", "normalized": [] } ]
1.0alpha7.train.641
15854669
[ { "id": "1.0alpha7.train.641.sent", "type": "sentence", "text": [ " Taking these findings together with the results of Ikeda et al. ( 20), we conclude that the GID binds directly to GSK-3beta but does not inhibit its activity in vitro, in contrast to the robust inhibition seen in oocytes and embryos. " ], "offsets": [ [ 0, 238 ] ] } ]
[ { "id": "1.0alpha7.train.641.ent0_0", "type": "protein", "text": [ "GSK-3beta" ], "offsets": [ [ 117, 126 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2932" }, { "db_name": "hgnc", "db_id": "GSK3B" }, { "db_name": "uniprot", "db_id": "P49841" } ] }, { "id": "1.0alpha7.train.641.ent1_0", "type": "protein-complex", "text": [ "GID" ], "offsets": [ [ 94, 97 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.641.coref0", "entity_ids": [ "1.0alpha7.train.641.ent0_0" ] }, { "id": "1.0alpha7.train.641.coref1", "entity_ids": [ "1.0alpha7.train.641.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.641.rel0s1.0alpha7.train.641.ent0_0.o1.0alpha7.train.641.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.641.ent0_0", "arg2_id": "1.0alpha7.train.641.ent1_0", "normalized": [] } ]
1.0alpha7.train.642
2892273
[ { "id": "1.0alpha7.train.642.sent", "type": "sentence", "text": [ "Immunoadsorption of FKBP52 from reticulocyte lysate also yields co-immunoadsorption of cytoplasmic dynein, and we show that co-immunoadsorption of dynein is competed by a fragment of FKBP52 containing its PPIase domain, but not by a TPR domain fragment that blocks FKBP52 binding to hsp90." ], "offsets": [ [ 0, 289 ] ] } ]
[ { "id": "1.0alpha7.train.642.ent0_0", "type": "protein", "text": [ "FKBP52" ], "offsets": [ [ 20, 26 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2288" }, { "db_name": "hgnc", "db_id": "FKBP4" } ] }, { "id": "1.0alpha7.train.642.ent1_1", "type": "protein", "text": [ "FKBP52" ], "offsets": [ [ 183, 189 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2288" }, { "db_name": "hgnc", "db_id": "FKBP4" } ] }, { "id": "1.0alpha7.train.642.ent2_2", "type": "protein", "text": [ "FKBP52" ], "offsets": [ [ 265, 271 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2288" }, { "db_name": "hgnc", "db_id": "FKBP4" } ] }, { "id": "1.0alpha7.train.642.ent3_0", "type": "protein-family", "text": [ "dynein" ], "offsets": [ [ 99, 105 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR037177" } ] }, { "id": "1.0alpha7.train.642.ent4_1", "type": "protein-family", "text": [ "dynein" ], "offsets": [ [ 147, 153 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR037177" } ] }, { "id": "1.0alpha7.train.642.ent5_0", "type": "protein", "text": [ "hsp90" ], "offsets": [ [ 283, 288 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3320" }, { "db_name": "hgnc", "db_id": "HSP90AA1" }, { "db_name": "uniprot", "db_id": "P07900" } ] }, { "id": "1.0alpha7.train.642.ent6_0", "type": "protein-domain", "text": [ "PPIase" ], "offsets": [ [ 205, 211 ] ], "normalized": [] }, { "id": "1.0alpha7.train.642.ent7_0", "type": "protein-domain", "text": [ "TPR" ], "offsets": [ [ 233, 236 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.642.coref0", "entity_ids": [ "1.0alpha7.train.642.ent0_0", "1.0alpha7.train.642.ent1_1", "1.0alpha7.train.642.ent2_2" ] }, { "id": "1.0alpha7.train.642.coref1", "entity_ids": [ "1.0alpha7.train.642.ent3_0", "1.0alpha7.train.642.ent4_1" ] }, { "id": "1.0alpha7.train.642.coref2", "entity_ids": [ "1.0alpha7.train.642.ent5_0" ] }, { "id": "1.0alpha7.train.642.coref3", "entity_ids": [ "1.0alpha7.train.642.ent6_0" ] }, { "id": "1.0alpha7.train.642.coref4", "entity_ids": [ "1.0alpha7.train.642.ent7_0" ] } ]
[ { "id": "1.0alpha7.train.642.rel0s1.0alpha7.train.642.ent0_0.o1.0alpha7.train.642.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.642.ent0_0", "arg2_id": "1.0alpha7.train.642.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.642.rel0s1.0alpha7.train.642.ent1_1.o1.0alpha7.train.642.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.642.ent1_1", "arg2_id": "1.0alpha7.train.642.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.642.rel0s1.0alpha7.train.642.ent2_2.o1.0alpha7.train.642.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.642.ent2_2", "arg2_id": "1.0alpha7.train.642.ent5_0", "normalized": [] } ]
1.0alpha7.train.643
25204644
[ { "id": "1.0alpha7.train.643.sent", "type": "sentence", "text": [ "Our data imply that among the typically used control reagents in phorbol ester experiments on PKC (C1-domain antagonists like calphostin C, inactive 4α phorbol esters, inhibitors of ATP binding like bisindolylmaleimide), only potent and selective inhibitors of ATP binding to PKC would allow one to distinguish phorbol ester-mediated effects on PKC from those on Munc13 proteins (assuming that Munc13s do not bind these ligands with a binding site outside the C1-domain)." ], "offsets": [ [ 0, 471 ] ] } ]
[ { "id": "1.0alpha7.train.643.ent0_0", "type": "chemical", "text": [ "bisindolylmaleimide" ], "offsets": [ [ 199, 218 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "2396" } ] }, { "id": "1.0alpha7.train.643.ent1_0", "type": "protein", "text": [ "Munc13" ], "offsets": [ [ 363, 369 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "23025" }, { "db_name": "hgnc", "db_id": "UNC13A" }, { "db_name": "uniprot", "db_id": "Q9UPW8" } ] }, { "id": "1.0alpha7.train.643.ent2_0", "type": "protein", "text": [ "Munc13s" ], "offsets": [ [ 394, 401 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "23025" }, { "db_name": "hgnc", "db_id": "UNC13A" }, { "db_name": "uniprot", "db_id": "Q9UPW8" } ] }, { "id": "1.0alpha7.train.643.ent3_0", "type": "chemical", "text": [ "inactive 4α phorbol esters" ], "offsets": [ [ 140, 166 ] ], "normalized": [] }, { "id": "1.0alpha7.train.643.ent4_0", "type": "protein-family", "text": [ "PKC" ], "offsets": [ [ 94, 97 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR014376" } ] }, { "id": "1.0alpha7.train.643.ent5_1", "type": "protein-family", "text": [ "PKC" ], "offsets": [ [ 276, 279 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR014376" } ] }, { "id": "1.0alpha7.train.643.ent6_2", "type": "protein-family", "text": [ "PKC" ], "offsets": [ [ 345, 348 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR014376" } ] }, { "id": "1.0alpha7.train.643.ent7_0", "type": "chemical", "text": [ "calphostin C" ], "offsets": [ [ 126, 138 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "2533" } ] }, { "id": "1.0alpha7.train.643.ent8_0", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 182, 185 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.643.ent9_1", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 261, 264 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.643.ent10_0", "type": "protein-domain", "text": [ "C1-domain" ], "offsets": [ [ 99, 108 ] ], "normalized": [] }, { "id": "1.0alpha7.train.643.ent11_1", "type": "protein-domain", "text": [ "C1-domain" ], "offsets": [ [ 460, 469 ] ], "normalized": [] }, { "id": "1.0alpha7.train.643.ent12_0", "type": "chemical", "text": [ "phorbol ester" ], "offsets": [ [ 65, 78 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "22833501" } ] }, { "id": "1.0alpha7.train.643.ent13_1", "type": "chemical", "text": [ "phorbol ester" ], "offsets": [ [ 311, 324 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "22833501" } ] } ]
[]
[ { "id": "1.0alpha7.train.643.coref0", "entity_ids": [ "1.0alpha7.train.643.ent0_0" ] }, { "id": "1.0alpha7.train.643.coref1", "entity_ids": [ "1.0alpha7.train.643.ent1_0", "1.0alpha7.train.643.ent2_0" ] }, { "id": "1.0alpha7.train.643.coref2", "entity_ids": [ "1.0alpha7.train.643.ent3_0" ] }, { "id": "1.0alpha7.train.643.coref3", "entity_ids": [ "1.0alpha7.train.643.ent4_0", "1.0alpha7.train.643.ent5_1", "1.0alpha7.train.643.ent6_2" ] }, { "id": "1.0alpha7.train.643.coref4", "entity_ids": [ "1.0alpha7.train.643.ent7_0" ] }, { "id": "1.0alpha7.train.643.coref5", "entity_ids": [ "1.0alpha7.train.643.ent8_0", "1.0alpha7.train.643.ent9_1" ] }, { "id": "1.0alpha7.train.643.coref6", "entity_ids": [ "1.0alpha7.train.643.ent10_0", "1.0alpha7.train.643.ent11_1" ] }, { "id": "1.0alpha7.train.643.coref7", "entity_ids": [ "1.0alpha7.train.643.ent12_0", "1.0alpha7.train.643.ent13_1" ] } ]
[ { "id": "1.0alpha7.train.643.rel0s1.0alpha7.train.643.ent4_0.o1.0alpha7.train.643.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent4_0", "arg2_id": "1.0alpha7.train.643.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel0s1.0alpha7.train.643.ent4_0.o1.0alpha7.train.643.ent9_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent4_0", "arg2_id": "1.0alpha7.train.643.ent9_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel0s1.0alpha7.train.643.ent5_1.o1.0alpha7.train.643.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent5_1", "arg2_id": "1.0alpha7.train.643.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel0s1.0alpha7.train.643.ent5_1.o1.0alpha7.train.643.ent9_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent5_1", "arg2_id": "1.0alpha7.train.643.ent9_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel0s1.0alpha7.train.643.ent6_2.o1.0alpha7.train.643.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent6_2", "arg2_id": "1.0alpha7.train.643.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel0s1.0alpha7.train.643.ent6_2.o1.0alpha7.train.643.ent9_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent6_2", "arg2_id": "1.0alpha7.train.643.ent9_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel1s1.0alpha7.train.643.ent1_0.o1.0alpha7.train.643.ent12_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent1_0", "arg2_id": "1.0alpha7.train.643.ent12_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel1s1.0alpha7.train.643.ent1_0.o1.0alpha7.train.643.ent13_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent1_0", "arg2_id": "1.0alpha7.train.643.ent13_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel1s1.0alpha7.train.643.ent2_0.o1.0alpha7.train.643.ent12_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent2_0", "arg2_id": "1.0alpha7.train.643.ent12_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel1s1.0alpha7.train.643.ent2_0.o1.0alpha7.train.643.ent13_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent2_0", "arg2_id": "1.0alpha7.train.643.ent13_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel2s1.0alpha7.train.643.ent1_0.o1.0alpha7.train.643.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent1_0", "arg2_id": "1.0alpha7.train.643.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel2s1.0alpha7.train.643.ent2_0.o1.0alpha7.train.643.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent2_0", "arg2_id": "1.0alpha7.train.643.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel3s1.0alpha7.train.643.ent1_0.o1.0alpha7.train.643.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent1_0", "arg2_id": "1.0alpha7.train.643.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel3s1.0alpha7.train.643.ent2_0.o1.0alpha7.train.643.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent2_0", "arg2_id": "1.0alpha7.train.643.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel4s1.0alpha7.train.643.ent1_0.o1.0alpha7.train.643.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent1_0", "arg2_id": "1.0alpha7.train.643.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel4s1.0alpha7.train.643.ent1_0.o1.0alpha7.train.643.ent9_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent1_0", "arg2_id": "1.0alpha7.train.643.ent9_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel4s1.0alpha7.train.643.ent2_0.o1.0alpha7.train.643.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent2_0", "arg2_id": "1.0alpha7.train.643.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel4s1.0alpha7.train.643.ent2_0.o1.0alpha7.train.643.ent9_1", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent2_0", "arg2_id": "1.0alpha7.train.643.ent9_1", "normalized": [] }, { "id": "1.0alpha7.train.643.rel5s1.0alpha7.train.643.ent0_0.o1.0alpha7.train.643.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent0_0", "arg2_id": "1.0alpha7.train.643.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.643.rel5s1.0alpha7.train.643.ent0_0.o1.0alpha7.train.643.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.643.ent0_0", "arg2_id": "1.0alpha7.train.643.ent2_0", "normalized": [] } ]
1.0alpha7.train.644
5002058
[ { "id": "1.0alpha7.train.644.sent", "type": "sentence", "text": [ "C, TNP-ATP concentration-dependent increases in Fobs with MBP without fusion protein are low (F P) and unaffected by 5 mM MgATP (F P MgATP) or 4 M urea (F P Urea), indicating no TNP-ATP binding to MBP." ], "offsets": [ [ 0, 201 ] ] } ]
[ { "id": "1.0alpha7.train.644.ent0_0", "type": "chemical", "text": [ "urea" ], "offsets": [ [ 147, 151 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "1176" } ] }, { "id": "1.0alpha7.train.644.ent1_0", "type": "parameter", "text": [ "Fobs" ], "offsets": [ [ 48, 52 ] ], "normalized": [] }, { "id": "1.0alpha7.train.644.ent2_0", "type": "chemical", "text": [ "MgATP" ], "offsets": [ [ 122, 127 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "15126" } ] }, { "id": "1.0alpha7.train.644.ent3_0", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 7, 10 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.644.ent4_1", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 182, 185 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.644.ent5_0", "type": "chemical", "text": [ "TNP-ATP" ], "offsets": [ [ 3, 10 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "644357" } ] }, { "id": "1.0alpha7.train.644.ent6_1", "type": "chemical", "text": [ "TNP-ATP" ], "offsets": [ [ 178, 185 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "644357" } ] }, { "id": "1.0alpha7.train.644.ent7_0", "type": "protein", "text": [ "MBP" ], "offsets": [ [ 58, 61 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "4153" }, { "db_name": "hgnc", "db_id": "MBL2" }, { "db_name": "uniprot", "db_id": "P11226" } ] }, { "id": "1.0alpha7.train.644.ent8_1", "type": "protein", "text": [ "MBP" ], "offsets": [ [ 197, 200 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "4153" }, { "db_name": "hgnc", "db_id": "MBL2" }, { "db_name": "uniprot", "db_id": "P11226" } ] } ]
[]
[ { "id": "1.0alpha7.train.644.coref0", "entity_ids": [ "1.0alpha7.train.644.ent0_0" ] }, { "id": "1.0alpha7.train.644.coref1", "entity_ids": [ "1.0alpha7.train.644.ent1_0" ] }, { "id": "1.0alpha7.train.644.coref2", "entity_ids": [ "1.0alpha7.train.644.ent2_0" ] }, { "id": "1.0alpha7.train.644.coref3", "entity_ids": [ "1.0alpha7.train.644.ent3_0", "1.0alpha7.train.644.ent4_1" ] }, { "id": "1.0alpha7.train.644.coref4", "entity_ids": [ "1.0alpha7.train.644.ent5_0", "1.0alpha7.train.644.ent6_1" ] }, { "id": "1.0alpha7.train.644.coref5", "entity_ids": [ "1.0alpha7.train.644.ent7_0", "1.0alpha7.train.644.ent8_1" ] } ]
[ { "id": "1.0alpha7.train.644.rel0s1.0alpha7.train.644.ent5_0.o1.0alpha7.train.644.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.644.ent5_0", "arg2_id": "1.0alpha7.train.644.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.644.rel0s1.0alpha7.train.644.ent5_0.o1.0alpha7.train.644.ent8_1", "type": "bind", "arg1_id": "1.0alpha7.train.644.ent5_0", "arg2_id": "1.0alpha7.train.644.ent8_1", "normalized": [] }, { "id": "1.0alpha7.train.644.rel0s1.0alpha7.train.644.ent6_1.o1.0alpha7.train.644.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.644.ent6_1", "arg2_id": "1.0alpha7.train.644.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.644.rel0s1.0alpha7.train.644.ent6_1.o1.0alpha7.train.644.ent8_1", "type": "bind", "arg1_id": "1.0alpha7.train.644.ent6_1", "arg2_id": "1.0alpha7.train.644.ent8_1", "normalized": [] } ]
1.0alpha7.train.645
10525577
[ { "id": "1.0alpha7.train.645.sent", "type": "sentence", "text": [ "1,2 It would seem most likely that the number of cMyBPC molecules would be three, considering that myosin rods are most probably arranged in a three-stranded helix,33 that six, probably paired, titin strands lie along the surface of the myosin backbone,33,34 and that the position of domain C10, which binds to both titin and myosin, would be dictated by the register of the first Ig-like domain of the titin superrepeats and the MyBPC binding site on the LMM component of myosin." ], "offsets": [ [ 0, 480 ] ] } ]
[ { "id": "1.0alpha7.train.645.ent0_0", "type": "protein", "text": [ "MyBPC" ], "offsets": [ [ 430, 435 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "4604" }, { "db_name": "hgnc", "db_id": "MYBPC1" }, { "db_name": "uniprot", "db_id": "Q00872" } ] }, { "id": "1.0alpha7.train.645.ent1_0", "type": "protein-complex", "text": [ "myosin" ], "offsets": [ [ 99, 105 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent2_1", "type": "protein-complex", "text": [ "myosin" ], "offsets": [ [ 237, 243 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent3_2", "type": "protein-complex", "text": [ "myosin" ], "offsets": [ [ 326, 332 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent4_3", "type": "protein-complex", "text": [ "myosin" ], "offsets": [ [ 473, 479 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent5_0", "type": "protein", "text": [ "cMyBPC" ], "offsets": [ [ 49, 55 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent6_0", "type": "protein", "text": [ "titin" ], "offsets": [ [ 194, 199 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7273" }, { "db_name": "hgnc", "db_id": "TTN" }, { "db_name": "uniprot", "db_id": "Q8WZ42" } ] }, { "id": "1.0alpha7.train.645.ent7_1", "type": "protein", "text": [ "titin" ], "offsets": [ [ 316, 321 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7273" }, { "db_name": "hgnc", "db_id": "TTN" }, { "db_name": "uniprot", "db_id": "Q8WZ42" } ] }, { "id": "1.0alpha7.train.645.ent8_2", "type": "protein", "text": [ "titin" ], "offsets": [ [ 403, 408 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7273" }, { "db_name": "hgnc", "db_id": "TTN" }, { "db_name": "uniprot", "db_id": "Q8WZ42" } ] }, { "id": "1.0alpha7.train.645.ent9_0", "type": "protein", "text": [ "LMM" ], "offsets": [ [ 456, 459 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent10_0", "type": "protein-domain", "text": [ "C10" ], "offsets": [ [ 291, 294 ] ], "normalized": [] }, { "id": "1.0alpha7.train.645.ent11_0", "type": "protein-domain", "text": [ "Ig-like" ], "offsets": [ [ 381, 388 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.645.coref0", "entity_ids": [ "1.0alpha7.train.645.ent0_0" ] }, { "id": "1.0alpha7.train.645.coref1", "entity_ids": [ "1.0alpha7.train.645.ent1_0", "1.0alpha7.train.645.ent2_1", "1.0alpha7.train.645.ent3_2", "1.0alpha7.train.645.ent4_3" ] }, { "id": "1.0alpha7.train.645.coref2", "entity_ids": [ "1.0alpha7.train.645.ent5_0" ] }, { "id": "1.0alpha7.train.645.coref3", "entity_ids": [ "1.0alpha7.train.645.ent6_0", "1.0alpha7.train.645.ent7_1", "1.0alpha7.train.645.ent8_2" ] }, { "id": "1.0alpha7.train.645.coref4", "entity_ids": [ "1.0alpha7.train.645.ent9_0" ] }, { "id": "1.0alpha7.train.645.coref5", "entity_ids": [ "1.0alpha7.train.645.ent10_0" ] }, { "id": "1.0alpha7.train.645.coref6", "entity_ids": [ "1.0alpha7.train.645.ent11_0" ] } ]
[ { "id": "1.0alpha7.train.645.rel0s1.0alpha7.train.645.ent1_0.o1.0alpha7.train.645.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent1_0", "arg2_id": "1.0alpha7.train.645.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.645.rel0s1.0alpha7.train.645.ent2_1.o1.0alpha7.train.645.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent2_1", "arg2_id": "1.0alpha7.train.645.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.645.rel0s1.0alpha7.train.645.ent3_2.o1.0alpha7.train.645.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent3_2", "arg2_id": "1.0alpha7.train.645.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.645.rel0s1.0alpha7.train.645.ent4_3.o1.0alpha7.train.645.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent4_3", "arg2_id": "1.0alpha7.train.645.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.645.rel1s1.0alpha7.train.645.ent5_0.o1.0alpha7.train.645.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent5_0", "arg2_id": "1.0alpha7.train.645.ent6_0", "normalized": [] }, { "id": "1.0alpha7.train.645.rel1s1.0alpha7.train.645.ent5_0.o1.0alpha7.train.645.ent7_1", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent5_0", "arg2_id": "1.0alpha7.train.645.ent7_1", "normalized": [] }, { "id": "1.0alpha7.train.645.rel1s1.0alpha7.train.645.ent5_0.o1.0alpha7.train.645.ent8_2", "type": "bind", "arg1_id": "1.0alpha7.train.645.ent5_0", "arg2_id": "1.0alpha7.train.645.ent8_2", "normalized": [] } ]
1.0alpha7.train.646
1369099
[ { "id": "1.0alpha7.train.646.sent", "type": "sentence", "text": [ " Accordingly, it was proposed that binding of uncharged tRNA to the HisRS-like domain stimulates the ability of the kinase domain to phosphorylate eIF2alpha ( 51). " ], "offsets": [ [ 0, 168 ] ] } ]
[ { "id": "1.0alpha7.train.646.ent0_0", "type": "RNA", "text": [ "tRNA" ], "offsets": [ [ 57, 61 ] ], "normalized": [] }, { "id": "1.0alpha7.train.646.ent1_0", "type": "protein-domain", "text": [ "HisRS-like" ], "offsets": [ [ 70, 80 ] ], "normalized": [] }, { "id": "1.0alpha7.train.646.ent2_0", "type": "protein", "text": [ "eIF2alpha" ], "offsets": [ [ 150, 159 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1965" }, { "db_name": "hgnc", "db_id": "EIF2S1" }, { "db_name": "uniprot", "db_id": "P05198" } ] } ]
[]
[ { "id": "1.0alpha7.train.646.coref0", "entity_ids": [ "1.0alpha7.train.646.ent0_0" ] }, { "id": "1.0alpha7.train.646.coref1", "entity_ids": [ "1.0alpha7.train.646.ent1_0" ] }, { "id": "1.0alpha7.train.646.coref2", "entity_ids": [ "1.0alpha7.train.646.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.646.rel0s1.0alpha7.train.646.ent0_0.o1.0alpha7.train.646.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.646.ent0_0", "arg2_id": "1.0alpha7.train.646.ent1_0", "normalized": [] } ]
1.0alpha7.train.647
11309886
[ { "id": "1.0alpha7.train.647.sent", "type": "sentence", "text": [ "Increased Pyk2 tyrosine phosphorylation paralleled the time-course of Grb2 binding to Shc and activation of ERK2 in FAK- cells." ], "offsets": [ [ 0, 131 ] ] } ]
[ { "id": "1.0alpha7.train.647.ent0_0", "type": "cell", "text": [ "FAK" ], "offsets": [ [ 120, 123 ] ], "normalized": [] }, { "id": "1.0alpha7.train.647.ent1_0", "type": "protein", "text": [ "Shc" ], "offsets": [ [ 88, 91 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6464" }, { "db_name": "hgnc", "db_id": "SHC1" }, { "db_name": "uniprot", "db_id": "P29353" } ] }, { "id": "1.0alpha7.train.647.ent2_0", "type": "protein", "text": [ "Grb2" ], "offsets": [ [ 71, 75 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2885" }, { "db_name": "hgnc", "db_id": "GRB2" }, { "db_name": "uniprot", "db_id": "P62993" } ] }, { "id": "1.0alpha7.train.647.ent3_0", "type": "protein", "text": [ "ERK2" ], "offsets": [ [ 111, 115 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5594" }, { "db_name": "hgnc", "db_id": "MAPK1" }, { "db_name": "uniprot", "db_id": "P28482" } ] }, { "id": "1.0alpha7.train.647.ent4_0", "type": "protein", "text": [ "Pyk2" ], "offsets": [ [ 10, 14 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2185" }, { "db_name": "hgnc", "db_id": "PTK2B" }, { "db_name": "uniprot", "db_id": "Q14289" } ] } ]
[]
[ { "id": "1.0alpha7.train.647.coref0", "entity_ids": [ "1.0alpha7.train.647.ent0_0" ] }, { "id": "1.0alpha7.train.647.coref1", "entity_ids": [ "1.0alpha7.train.647.ent1_0" ] }, { "id": "1.0alpha7.train.647.coref2", "entity_ids": [ "1.0alpha7.train.647.ent2_0" ] }, { "id": "1.0alpha7.train.647.coref3", "entity_ids": [ "1.0alpha7.train.647.ent3_0" ] }, { "id": "1.0alpha7.train.647.coref4", "entity_ids": [ "1.0alpha7.train.647.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.647.rel0s1.0alpha7.train.647.ent1_0.o1.0alpha7.train.647.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.647.ent1_0", "arg2_id": "1.0alpha7.train.647.ent2_0", "normalized": [] } ]
1.0alpha7.train.648
18934905
[ { "id": "1.0alpha7.train.648.sent", "type": "sentence", "text": [ " The dI component, which binds NAD(H), and the dIII component, which binds NADP(H), protrude from the membrane; dII spans the membrane (in 12-14 TM helices). " ], "offsets": [ [ 0, 165 ] ] } ]
[ { "id": "1.0alpha7.train.648.ent0_0", "type": "chemical", "text": [ "NAD(H)" ], "offsets": [ [ 33, 39 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "925" } ] }, { "id": "1.0alpha7.train.648.ent1_0", "type": "protein", "text": [ "dIII" ], "offsets": [ [ 50, 54 ] ], "normalized": [] }, { "id": "1.0alpha7.train.648.ent2_0", "type": "chemical", "text": [ "NADP(H)" ], "offsets": [ [ 79, 86 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5885" } ] }, { "id": "1.0alpha7.train.648.ent3_0", "type": "protein", "text": [ "dII" ], "offsets": [ [ 117, 120 ] ], "normalized": [] }, { "id": "1.0alpha7.train.648.ent4_0", "type": "protein", "text": [ "dI" ], "offsets": [ [ 6, 8 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.648.coref0", "entity_ids": [ "1.0alpha7.train.648.ent0_0" ] }, { "id": "1.0alpha7.train.648.coref1", "entity_ids": [ "1.0alpha7.train.648.ent1_0" ] }, { "id": "1.0alpha7.train.648.coref2", "entity_ids": [ "1.0alpha7.train.648.ent2_0" ] }, { "id": "1.0alpha7.train.648.coref3", "entity_ids": [ "1.0alpha7.train.648.ent3_0" ] }, { "id": "1.0alpha7.train.648.coref4", "entity_ids": [ "1.0alpha7.train.648.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.648.rel0s1.0alpha7.train.648.ent0_0.o1.0alpha7.train.648.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.648.ent0_0", "arg2_id": "1.0alpha7.train.648.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.648.rel1s1.0alpha7.train.648.ent1_0.o1.0alpha7.train.648.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.648.ent1_0", "arg2_id": "1.0alpha7.train.648.ent2_0", "normalized": [] } ]
1.0alpha7.train.649
2873519
[ { "id": "1.0alpha7.train.649.sent", "type": "sentence", "text": [ " Therefore, we tested the binding of PP1 isoforms to recombinant spinophilin and neurabin. " ], "offsets": [ [ 0, 95 ] ] } ]
[ { "id": "1.0alpha7.train.649.ent0_0", "type": "protein-complex", "text": [ "PP1" ], "offsets": [ [ 38, 41 ] ], "normalized": [] }, { "id": "1.0alpha7.train.649.ent1_0", "type": "protein", "text": [ "neurabin" ], "offsets": [ [ 84, 92 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "55607" }, { "db_name": "hgnc", "db_id": "PPP1R9A" }, { "db_name": "uniprot", "db_id": "Q9ULJ8" } ] }, { "id": "1.0alpha7.train.649.ent2_0", "type": "protein", "text": [ "spinophilin" ], "offsets": [ [ 67, 78 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.649.coref0", "entity_ids": [ "1.0alpha7.train.649.ent0_0" ] }, { "id": "1.0alpha7.train.649.coref1", "entity_ids": [ "1.0alpha7.train.649.ent1_0" ] }, { "id": "1.0alpha7.train.649.coref2", "entity_ids": [ "1.0alpha7.train.649.ent2_0" ] } ]
[]
1.0alpha7.train.650
25032651
[ { "id": "1.0alpha7.train.650.sent", "type": "sentence", "text": [ "Although the authors claim that this effect is through disruption of PKC binding to RACK1, one of the residues converted to alanine was I236, a residue we now know to be essential for interaction with PDE4D5 (Buensuceso et al., 2001; Steele et al., 2001)." ], "offsets": [ [ 0, 255 ] ] } ]
[ { "id": "1.0alpha7.train.650.ent0_0", "type": "protein-isoform", "text": [ "PDE4D5" ], "offsets": [ [ 201, 207 ] ], "normalized": [] }, { "id": "1.0alpha7.train.650.ent1_0", "type": "protein-complex", "text": [ "PKC" ], "offsets": [ [ 69, 72 ] ], "normalized": [] }, { "id": "1.0alpha7.train.650.ent2_0", "type": "protein", "text": [ "RACK1" ], "offsets": [ [ 84, 89 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "10399" }, { "db_name": "hgnc", "db_id": "RACK1" } ] } ]
[]
[ { "id": "1.0alpha7.train.650.coref0", "entity_ids": [ "1.0alpha7.train.650.ent0_0" ] }, { "id": "1.0alpha7.train.650.coref1", "entity_ids": [ "1.0alpha7.train.650.ent1_0" ] }, { "id": "1.0alpha7.train.650.coref2", "entity_ids": [ "1.0alpha7.train.650.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.650.rel0s1.0alpha7.train.650.ent1_0.o1.0alpha7.train.650.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.650.ent1_0", "arg2_id": "1.0alpha7.train.650.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.650.rel1s1.0alpha7.train.650.ent0_0.o1.0alpha7.train.650.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.650.ent0_0", "arg2_id": "1.0alpha7.train.650.ent1_0", "normalized": [] } ]
1.0alpha7.train.651
24822327
[ { "id": "1.0alpha7.train.651.sent", "type": "sentence", "text": [ " Dixon RAF, Sigal IS, Rands E, Register RB, Candelore MR, Blake AD and Strader CD (1987) Ligand binding to the beta-adrenergic receptor involves its rhodopsin-like core. " ], "offsets": [ [ 0, 179 ] ] } ]
[ { "id": "1.0alpha7.train.651.ent0_0", "type": "protein-domain", "text": [ "rhodopsin-like" ], "offsets": [ [ 157, 171 ] ], "normalized": [] }, { "id": "1.0alpha7.train.651.ent1_0", "type": "protein", "text": [ "beta-adrenergic receptor" ], "offsets": [ [ 118, 142 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.651.coref0", "entity_ids": [ "1.0alpha7.train.651.ent0_0" ] }, { "id": "1.0alpha7.train.651.coref1", "entity_ids": [ "1.0alpha7.train.651.ent1_0" ] } ]
[]
1.0alpha7.train.652
4736764
[ { "id": "1.0alpha7.train.652.sent", "type": "sentence", "text": [ "The experiments described above show that alternative splicing of the VT motif determines binding of FRS2 to Fgfr1 (and presumably Fgfr2 and -3, which also exhibit VT splicing (23))." ], "offsets": [ [ 0, 182 ] ] } ]
[ { "id": "1.0alpha7.train.652.ent0_0", "type": "protein", "text": [ "Fgfr2" ], "offsets": [ [ 131, 136 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2263" }, { "db_name": "hgnc", "db_id": "FGFR2" }, { "db_name": "uniprot", "db_id": "P21802" } ] }, { "id": "1.0alpha7.train.652.ent1_0", "type": "protein", "text": [ "FRS2" ], "offsets": [ [ 101, 105 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "10818" }, { "db_name": "hgnc", "db_id": "FRS2" } ] }, { "id": "1.0alpha7.train.652.ent2_0", "type": "protein-motif", "text": [ "VT" ], "offsets": [ [ 70, 72 ] ], "normalized": [] }, { "id": "1.0alpha7.train.652.ent3_1", "type": "protein-motif", "text": [ "VT" ], "offsets": [ [ 164, 166 ] ], "normalized": [] }, { "id": "1.0alpha7.train.652.ent4_0", "type": "protein", "text": [ "-3" ], "offsets": [ [ 141, 143 ] ], "normalized": [] }, { "id": "1.0alpha7.train.652.ent5_0", "type": "protein", "text": [ "Fgfr1" ], "offsets": [ [ 109, 114 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2260" }, { "db_name": "hgnc", "db_id": "FGFR1" }, { "db_name": "uniprot", "db_id": "P11362" } ] } ]
[]
[ { "id": "1.0alpha7.train.652.coref0", "entity_ids": [ "1.0alpha7.train.652.ent0_0" ] }, { "id": "1.0alpha7.train.652.coref1", "entity_ids": [ "1.0alpha7.train.652.ent1_0" ] }, { "id": "1.0alpha7.train.652.coref2", "entity_ids": [ "1.0alpha7.train.652.ent2_0", "1.0alpha7.train.652.ent3_1" ] }, { "id": "1.0alpha7.train.652.coref3", "entity_ids": [ "1.0alpha7.train.652.ent4_0" ] }, { "id": "1.0alpha7.train.652.coref4", "entity_ids": [ "1.0alpha7.train.652.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.652.rel0s1.0alpha7.train.652.ent1_0.o1.0alpha7.train.652.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.652.ent1_0", "arg2_id": "1.0alpha7.train.652.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.652.rel1s1.0alpha7.train.652.ent0_0.o1.0alpha7.train.652.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.652.ent0_0", "arg2_id": "1.0alpha7.train.652.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.652.rel2s1.0alpha7.train.652.ent1_0.o1.0alpha7.train.652.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.652.ent1_0", "arg2_id": "1.0alpha7.train.652.ent4_0", "normalized": [] } ]
1.0alpha7.train.653
23330434
[ { "id": "1.0alpha7.train.653.sent", "type": "sentence", "text": [ " Growth cones were allowed to internalize anti-L1 Fab bound to L1 for 30 min, and the cell-surface Fab was blocked with unconjugated secondary antibody at 4 degrees C. " ], "offsets": [ [ 0, 171 ] ] } ]
[ { "id": "1.0alpha7.train.653.ent0_0", "type": "reagent", "text": [ "anti-L1 Fab" ], "offsets": [ [ 43, 54 ] ], "normalized": [] }, { "id": "1.0alpha7.train.653.ent1_0", "type": "reagent", "text": [ "Fab" ], "offsets": [ [ 51, 54 ] ], "normalized": [] }, { "id": "1.0alpha7.train.653.ent2_1", "type": "reagent", "text": [ "Fab" ], "offsets": [ [ 101, 104 ] ], "normalized": [] }, { "id": "1.0alpha7.train.653.ent3_0", "type": "protein", "text": [ "L1" ], "offsets": [ [ 48, 50 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3897" }, { "db_name": "hgnc", "db_id": "L1CAM" }, { "db_name": "uniprot", "db_id": "P32004" } ] }, { "id": "1.0alpha7.train.653.ent4_1", "type": "protein", "text": [ "L1" ], "offsets": [ [ 65, 67 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3897" }, { "db_name": "hgnc", "db_id": "L1CAM" }, { "db_name": "uniprot", "db_id": "P32004" } ] } ]
[]
[ { "id": "1.0alpha7.train.653.coref0", "entity_ids": [ "1.0alpha7.train.653.ent0_0" ] }, { "id": "1.0alpha7.train.653.coref1", "entity_ids": [ "1.0alpha7.train.653.ent1_0", "1.0alpha7.train.653.ent2_1" ] }, { "id": "1.0alpha7.train.653.coref2", "entity_ids": [ "1.0alpha7.train.653.ent3_0", "1.0alpha7.train.653.ent4_1" ] } ]
[ { "id": "1.0alpha7.train.653.rel0s1.0alpha7.train.653.ent0_0.o1.0alpha7.train.653.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.653.ent0_0", "arg2_id": "1.0alpha7.train.653.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.653.rel0s1.0alpha7.train.653.ent0_0.o1.0alpha7.train.653.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.653.ent0_0", "arg2_id": "1.0alpha7.train.653.ent4_1", "normalized": [] } ]
1.0alpha7.train.654
5102505
[ { "id": "1.0alpha7.train.654.sent", "type": "sentence", "text": [ " To further analyze the binding of c-Maf and Prox-1 to p300, a mammalian two-hybrid assay was established (Fig. 6). " ], "offsets": [ [ 0, 123 ] ] } ]
[ { "id": "1.0alpha7.train.654.ent0_0", "type": "protein", "text": [ "Prox-1" ], "offsets": [ [ 49, 55 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5629" }, { "db_name": "hgnc", "db_id": "PROX1" }, { "db_name": "uniprot", "db_id": "Q92786" } ] }, { "id": "1.0alpha7.train.654.ent1_0", "type": "protein", "text": [ "c-Maf" ], "offsets": [ [ 38, 43 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "4094" }, { "db_name": "hgnc", "db_id": "MAF" }, { "db_name": "uniprot", "db_id": "O75444" } ] }, { "id": "1.0alpha7.train.654.ent2_0", "type": "protein", "text": [ "p300" ], "offsets": [ [ 60, 64 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2033" }, { "db_name": "hgnc", "db_id": "EP300" }, { "db_name": "uniprot", "db_id": "Q09472" } ] } ]
[]
[ { "id": "1.0alpha7.train.654.coref0", "entity_ids": [ "1.0alpha7.train.654.ent0_0" ] }, { "id": "1.0alpha7.train.654.coref1", "entity_ids": [ "1.0alpha7.train.654.ent1_0" ] }, { "id": "1.0alpha7.train.654.coref2", "entity_ids": [ "1.0alpha7.train.654.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.654.rel0s1.0alpha7.train.654.ent1_0.o1.0alpha7.train.654.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.654.ent1_0", "arg2_id": "1.0alpha7.train.654.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.654.rel1s1.0alpha7.train.654.ent0_0.o1.0alpha7.train.654.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.654.ent0_0", "arg2_id": "1.0alpha7.train.654.ent2_0", "normalized": [] } ]
1.0alpha7.train.655
9664392
[ { "id": "1.0alpha7.train.655.sent", "type": "sentence", "text": [ " With much lower affinity, kinesin also binds MTs at the physiologic pH 7.2-7.4 (Fig. 2 B), suggesting that kinesin could be purified at this pH if the concentrations of MTs and kinesin were sufficiently high. " ], "offsets": [ [ 0, 219 ] ] } ]
[ { "id": "1.0alpha7.train.655.ent0_0", "type": "protein-family", "text": [ "kinesin" ], "offsets": [ [ 28, 35 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR027640" } ] }, { "id": "1.0alpha7.train.655.ent1_1", "type": "protein-family", "text": [ "kinesin" ], "offsets": [ [ 114, 121 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR027640" } ] }, { "id": "1.0alpha7.train.655.ent2_2", "type": "protein-family", "text": [ "kinesin" ], "offsets": [ [ 186, 193 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR027640" } ] }, { "id": "1.0alpha7.train.655.ent3_0", "type": "organelle", "text": [ "MTs" ], "offsets": [ [ 49, 52 ] ], "normalized": [] }, { "id": "1.0alpha7.train.655.ent4_1", "type": "organelle", "text": [ "MTs" ], "offsets": [ [ 177, 180 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.655.coref0", "entity_ids": [ "1.0alpha7.train.655.ent0_0", "1.0alpha7.train.655.ent1_1", "1.0alpha7.train.655.ent2_2" ] }, { "id": "1.0alpha7.train.655.coref1", "entity_ids": [ "1.0alpha7.train.655.ent3_0", "1.0alpha7.train.655.ent4_1" ] } ]
[ { "id": "1.0alpha7.train.655.rel0s1.0alpha7.train.655.ent0_0.o1.0alpha7.train.655.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.655.ent0_0", "arg2_id": "1.0alpha7.train.655.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.655.rel0s1.0alpha7.train.655.ent0_0.o1.0alpha7.train.655.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.655.ent0_0", "arg2_id": "1.0alpha7.train.655.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.655.rel0s1.0alpha7.train.655.ent1_1.o1.0alpha7.train.655.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.655.ent1_1", "arg2_id": "1.0alpha7.train.655.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.655.rel0s1.0alpha7.train.655.ent1_1.o1.0alpha7.train.655.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.655.ent1_1", "arg2_id": "1.0alpha7.train.655.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.655.rel0s1.0alpha7.train.655.ent2_2.o1.0alpha7.train.655.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.655.ent2_2", "arg2_id": "1.0alpha7.train.655.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.655.rel0s1.0alpha7.train.655.ent2_2.o1.0alpha7.train.655.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.655.ent2_2", "arg2_id": "1.0alpha7.train.655.ent4_1", "normalized": [] } ]
1.0alpha7.train.656
23758093
[ { "id": "1.0alpha7.train.656.sent", "type": "sentence", "text": [ "BMP signaling is determined by expression patterns of BMPs, their receptors, and soluble BMP antagonists, such as noggin and follistatin, which directly bind BMPs and prevent functional receptor/ligand interaction (for review, see Cho and Blitz, 1998)." ], "offsets": [ [ 0, 252 ] ] } ]
[ { "id": "1.0alpha7.train.656.ent0_0", "type": "protein", "text": [ "noggin" ], "offsets": [ [ 114, 120 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "9241" }, { "db_name": "hgnc", "db_id": "NOG" }, { "db_name": "uniprot", "db_id": "Q13253" } ] }, { "id": "1.0alpha7.train.656.ent1_0", "type": "protein-family", "text": [ "BMP" ], "offsets": [ [ 0, 3 ] ], "normalized": [] }, { "id": "1.0alpha7.train.656.ent2_1", "type": "protein-family", "text": [ "BMP" ], "offsets": [ [ 89, 92 ] ], "normalized": [] }, { "id": "1.0alpha7.train.656.ent3_0", "type": "protein-family", "text": [ "BMPs" ], "offsets": [ [ 54, 58 ] ], "normalized": [] }, { "id": "1.0alpha7.train.656.ent4_1", "type": "protein-family", "text": [ "BMPs" ], "offsets": [ [ 158, 162 ] ], "normalized": [] }, { "id": "1.0alpha7.train.656.ent5_0", "type": "protein", "text": [ "follistatin" ], "offsets": [ [ 125, 136 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "10468" }, { "db_name": "hgnc", "db_id": "FST" }, { "db_name": "uniprot", "db_id": "P19883" } ] } ]
[]
[ { "id": "1.0alpha7.train.656.coref0", "entity_ids": [ "1.0alpha7.train.656.ent0_0" ] }, { "id": "1.0alpha7.train.656.coref1", "entity_ids": [ "1.0alpha7.train.656.ent1_0", "1.0alpha7.train.656.ent2_1", "1.0alpha7.train.656.ent3_0", "1.0alpha7.train.656.ent4_1" ] }, { "id": "1.0alpha7.train.656.coref2", "entity_ids": [ "1.0alpha7.train.656.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.656.rel0s1.0alpha7.train.656.ent0_0.o1.0alpha7.train.656.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent0_0", "arg2_id": "1.0alpha7.train.656.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.656.rel0s1.0alpha7.train.656.ent0_0.o1.0alpha7.train.656.ent2_1", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent0_0", "arg2_id": "1.0alpha7.train.656.ent2_1", "normalized": [] }, { "id": "1.0alpha7.train.656.rel0s1.0alpha7.train.656.ent0_0.o1.0alpha7.train.656.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent0_0", "arg2_id": "1.0alpha7.train.656.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.656.rel0s1.0alpha7.train.656.ent0_0.o1.0alpha7.train.656.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent0_0", "arg2_id": "1.0alpha7.train.656.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.656.rel1s1.0alpha7.train.656.ent1_0.o1.0alpha7.train.656.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent1_0", "arg2_id": "1.0alpha7.train.656.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.656.rel1s1.0alpha7.train.656.ent2_1.o1.0alpha7.train.656.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent2_1", "arg2_id": "1.0alpha7.train.656.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.656.rel1s1.0alpha7.train.656.ent3_0.o1.0alpha7.train.656.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent3_0", "arg2_id": "1.0alpha7.train.656.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.656.rel1s1.0alpha7.train.656.ent4_1.o1.0alpha7.train.656.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.656.ent4_1", "arg2_id": "1.0alpha7.train.656.ent5_0", "normalized": [] } ]
1.0alpha7.train.657
7365792
[ { "id": "1.0alpha7.train.657.sent", "type": "sentence", "text": [ "The binding of thioredoxin to T7 DNA polymerase increases the affinity of the polymerase specifically to a primer-template by 80-fold ( 6)." ], "offsets": [ [ 0, 141 ] ] } ]
[ { "id": "1.0alpha7.train.657.ent0_0", "type": "cell", "text": [ "T7" ], "offsets": [ [ 32, 34 ] ], "normalized": [] }, { "id": "1.0alpha7.train.657.ent1_0", "type": "protein", "text": [ "T7 DNA polymerase" ], "offsets": [ [ 32, 49 ] ], "normalized": [] }, { "id": "1.0alpha7.train.657.ent2_0", "type": "protein", "text": [ "thioredoxin" ], "offsets": [ [ 16, 27 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7295" }, { "db_name": "hgnc", "db_id": "TXN" }, { "db_name": "uniprot", "db_id": "P10599" } ] } ]
[]
[ { "id": "1.0alpha7.train.657.coref0", "entity_ids": [ "1.0alpha7.train.657.ent0_0" ] }, { "id": "1.0alpha7.train.657.coref1", "entity_ids": [ "1.0alpha7.train.657.ent1_0" ] }, { "id": "1.0alpha7.train.657.coref2", "entity_ids": [ "1.0alpha7.train.657.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.657.rel0s1.0alpha7.train.657.ent1_0.o1.0alpha7.train.657.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.657.ent1_0", "arg2_id": "1.0alpha7.train.657.ent2_0", "normalized": [] } ]
1.0alpha7.train.658
2649983
[ { "id": "1.0alpha7.train.658.sent", "type": "sentence", "text": [ "Previous studies have shown that F-actin binds to the epidermal growth factor receptor at a site in its cytoplasmic domain similar to a peptide of profilin ( 56)." ], "offsets": [ [ 0, 165 ] ] } ]
[ { "id": "1.0alpha7.train.658.ent0_0", "type": "protein", "text": [ "epidermal growth factor receptor" ], "offsets": [ [ 56, 88 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1956" }, { "db_name": "hgnc", "db_id": "EGFR" }, { "db_name": "uniprot", "db_id": "P00533" } ] }, { "id": "1.0alpha7.train.658.ent1_0", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 150, 158 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] }, { "id": "1.0alpha7.train.658.ent2_0", "type": "protein", "text": [ "actin" ], "offsets": [ [ 36, 41 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "58" }, { "db_name": "hgnc", "db_id": "ACTA1" }, { "db_name": "uniprot", "db_id": "P68133" } ] }, { "id": "1.0alpha7.train.658.ent3_0", "type": "protein", "text": [ "F-actin" ], "offsets": [ [ 34, 41 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.658.coref0", "entity_ids": [ "1.0alpha7.train.658.ent0_0" ] }, { "id": "1.0alpha7.train.658.coref1", "entity_ids": [ "1.0alpha7.train.658.ent1_0" ] }, { "id": "1.0alpha7.train.658.coref2", "entity_ids": [ "1.0alpha7.train.658.ent2_0" ] }, { "id": "1.0alpha7.train.658.coref3", "entity_ids": [ "1.0alpha7.train.658.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.658.rel0s1.0alpha7.train.658.ent0_0.o1.0alpha7.train.658.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.658.ent0_0", "arg2_id": "1.0alpha7.train.658.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.658.rel1s1.0alpha7.train.658.ent1_0.o1.0alpha7.train.658.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.658.ent1_0", "arg2_id": "1.0alpha7.train.658.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.658.rel2s1.0alpha7.train.658.ent0_0.o1.0alpha7.train.658.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.658.ent0_0", "arg2_id": "1.0alpha7.train.658.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.658.rel3s1.0alpha7.train.658.ent0_0.o1.0alpha7.train.658.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.658.ent0_0", "arg2_id": "1.0alpha7.train.658.ent2_0", "normalized": [] } ]
1.0alpha7.train.659
1393692
[ { "id": "1.0alpha7.train.659.sent", "type": "sentence", "text": [ "This suggests that tFR-bound FAD has the same absorption coefficient at 450 nm as free FAD." ], "offsets": [ [ 0, 92 ] ] } ]
[ { "id": "1.0alpha7.train.659.ent0_0", "type": "chemical", "text": [ "FAD" ], "offsets": [ [ 30, 33 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "643975" } ] }, { "id": "1.0alpha7.train.659.ent1_1", "type": "chemical", "text": [ "FAD" ], "offsets": [ [ 88, 91 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "643975" } ] }, { "id": "1.0alpha7.train.659.ent2_0", "type": "protein", "text": [ "tFR" ], "offsets": [ [ 20, 23 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.659.coref0", "entity_ids": [ "1.0alpha7.train.659.ent0_0", "1.0alpha7.train.659.ent1_1" ] }, { "id": "1.0alpha7.train.659.coref1", "entity_ids": [ "1.0alpha7.train.659.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.659.rel0s1.0alpha7.train.659.ent0_0.o1.0alpha7.train.659.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.659.ent0_0", "arg2_id": "1.0alpha7.train.659.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.659.rel0s1.0alpha7.train.659.ent1_1.o1.0alpha7.train.659.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.659.ent1_1", "arg2_id": "1.0alpha7.train.659.ent2_0", "normalized": [] } ]
1.0alpha7.train.660
1699365
[ { "id": "1.0alpha7.train.660.sent", "type": "sentence", "text": [ "REM-1 motifs appear to differ in their ability to discriminate between the GTP- and GDP-bound forms of RhoA.2 No sequence motifs common to other RhoA effectors have been identified, although the defined Rho-binding regions of Citron, Kinectin, and the ROCKs are all found in regions of extended α-helical coiled-coil structure." ], "offsets": [ [ 0, 327 ] ] } ]
[ { "id": "1.0alpha7.train.660.ent0_0", "type": "chemical", "text": [ "GDP" ], "offsets": [ [ 84, 87 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398618" } ] }, { "id": "1.0alpha7.train.660.ent1_0", "type": "protein", "text": [ "Citron" ], "offsets": [ [ 226, 232 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "11113" }, { "db_name": "hgnc", "db_id": "CIT" }, { "db_name": "uniprot", "db_id": "O14578" } ] }, { "id": "1.0alpha7.train.660.ent2_0", "type": "protein", "text": [ "Kinectin" ], "offsets": [ [ 234, 242 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3895" }, { "db_name": "hgnc", "db_id": "KTN1" }, { "db_name": "uniprot", "db_id": "Q86UP2" } ] }, { "id": "1.0alpha7.train.660.ent3_0", "type": "protein", "text": [ "REM-1" ], "offsets": [ [ 0, 5 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "28954" }, { "db_name": "hgnc", "db_id": "REM1" }, { "db_name": "uniprot", "db_id": "O75628" } ] }, { "id": "1.0alpha7.train.660.ent4_0", "type": "protein-family", "text": [ "ROCKs" ], "offsets": [ [ 252, 257 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR029876" } ] }, { "id": "1.0alpha7.train.660.ent5_0", "type": "chemical", "text": [ "GTP" ], "offsets": [ [ 75, 78 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398633" } ] }, { "id": "1.0alpha7.train.660.ent6_0", "type": "protein-family", "text": [ "Rho" ], "offsets": [ [ 203, 206 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR004665" } ] }, { "id": "1.0alpha7.train.660.ent7_0", "type": "protein", "text": [ "RhoA" ], "offsets": [ [ 103, 107 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "387" }, { "db_name": "hgnc", "db_id": "RHOA" }, { "db_name": "uniprot", "db_id": "P61586" } ] }, { "id": "1.0alpha7.train.660.ent8_1", "type": "protein", "text": [ "RhoA" ], "offsets": [ [ 145, 149 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "387" }, { "db_name": "hgnc", "db_id": "RHOA" }, { "db_name": "uniprot", "db_id": "P61586" } ] } ]
[]
[ { "id": "1.0alpha7.train.660.coref0", "entity_ids": [ "1.0alpha7.train.660.ent0_0" ] }, { "id": "1.0alpha7.train.660.coref1", "entity_ids": [ "1.0alpha7.train.660.ent1_0" ] }, { "id": "1.0alpha7.train.660.coref2", "entity_ids": [ "1.0alpha7.train.660.ent2_0" ] }, { "id": "1.0alpha7.train.660.coref3", "entity_ids": [ "1.0alpha7.train.660.ent3_0" ] }, { "id": "1.0alpha7.train.660.coref4", "entity_ids": [ "1.0alpha7.train.660.ent4_0" ] }, { "id": "1.0alpha7.train.660.coref5", "entity_ids": [ "1.0alpha7.train.660.ent5_0" ] }, { "id": "1.0alpha7.train.660.coref6", "entity_ids": [ "1.0alpha7.train.660.ent6_0" ] }, { "id": "1.0alpha7.train.660.coref7", "entity_ids": [ "1.0alpha7.train.660.ent7_0", "1.0alpha7.train.660.ent8_1" ] } ]
[ { "id": "1.0alpha7.train.660.rel0s1.0alpha7.train.660.ent5_0.o1.0alpha7.train.660.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent5_0", "arg2_id": "1.0alpha7.train.660.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.660.rel0s1.0alpha7.train.660.ent5_0.o1.0alpha7.train.660.ent8_1", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent5_0", "arg2_id": "1.0alpha7.train.660.ent8_1", "normalized": [] }, { "id": "1.0alpha7.train.660.rel1s1.0alpha7.train.660.ent0_0.o1.0alpha7.train.660.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent0_0", "arg2_id": "1.0alpha7.train.660.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.660.rel1s1.0alpha7.train.660.ent0_0.o1.0alpha7.train.660.ent8_1", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent0_0", "arg2_id": "1.0alpha7.train.660.ent8_1", "normalized": [] }, { "id": "1.0alpha7.train.660.rel2s1.0alpha7.train.660.ent1_0.o1.0alpha7.train.660.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent1_0", "arg2_id": "1.0alpha7.train.660.ent6_0", "normalized": [] }, { "id": "1.0alpha7.train.660.rel3s1.0alpha7.train.660.ent2_0.o1.0alpha7.train.660.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent2_0", "arg2_id": "1.0alpha7.train.660.ent6_0", "normalized": [] }, { "id": "1.0alpha7.train.660.rel4s1.0alpha7.train.660.ent4_0.o1.0alpha7.train.660.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.660.ent4_0", "arg2_id": "1.0alpha7.train.660.ent6_0", "normalized": [] } ]
1.0alpha7.train.661
11521315
[ { "id": "1.0alpha7.train.661.sent", "type": "sentence", "text": [ " Since Cdt1(RLF-B), like Cdc6, is required for stable binding of Mcm proteins to ORC/chromatin sites, geminin inhibits binding of Mcm proteins to chromatin and prevents initiation of DNA replication. " ], "offsets": [ [ 0, 207 ] ] } ]
[ { "id": "1.0alpha7.train.661.ent0_0", "type": "protein-complex", "text": [ "Mcm" ], "offsets": [ [ 68, 71 ] ], "normalized": [] }, { "id": "1.0alpha7.train.661.ent1_1", "type": "protein-complex", "text": [ "Mcm" ], "offsets": [ [ 136, 139 ] ], "normalized": [] }, { "id": "1.0alpha7.train.661.ent2_0", "type": "DNA", "text": [ "DNA" ], "offsets": [ [ 189, 192 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "25782" }, { "db_name": "hgnc", "db_id": "RAB3GAP2" }, { "db_name": "uniprot", "db_id": "Q9H2M9" } ] }, { "id": "1.0alpha7.train.661.ent3_0", "type": "protein", "text": [ "RLF-B" ], "offsets": [ [ 13, 18 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "81620" }, { "db_name": "hgnc", "db_id": "CDT1" }, { "db_name": "uniprot", "db_id": "Q9H211" } ] }, { "id": "1.0alpha7.train.661.ent4_0", "type": "protein", "text": [ "Cdt1" ], "offsets": [ [ 8, 12 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "81620" }, { "db_name": "hgnc", "db_id": "CDT1" }, { "db_name": "uniprot", "db_id": "Q9H211" } ] }, { "id": "1.0alpha7.train.661.ent5_0", "type": "DNA", "text": [ "sites" ], "offsets": [ [ 99, 104 ] ], "normalized": [] }, { "id": "1.0alpha7.train.661.ent6_0", "type": "protein-family", "text": [ "Mcm proteins" ], "offsets": [ [ 68, 80 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR001208" } ] }, { "id": "1.0alpha7.train.661.ent7_1", "type": "protein-family", "text": [ "Mcm proteins" ], "offsets": [ [ 136, 148 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR001208" } ] }, { "id": "1.0alpha7.train.661.ent8_0", "type": "DNA", "text": [ "chromatin sites" ], "offsets": [ [ 89, 104 ] ], "normalized": [] }, { "id": "1.0alpha7.train.661.ent9_0", "type": "protein", "text": [ "geminin" ], "offsets": [ [ 107, 114 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "51053" }, { "db_name": "hgnc", "db_id": "GMNN" }, { "db_name": "uniprot", "db_id": "O75496" } ] }, { "id": "1.0alpha7.train.661.ent10_0", "type": "protein-complex", "text": [ "ORC" ], "offsets": [ [ 85, 88 ] ], "normalized": [] }, { "id": "1.0alpha7.train.661.ent11_0", "type": "protein", "text": [ "Cdc6" ], "offsets": [ [ 27, 31 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "990" }, { "db_name": "hgnc", "db_id": "CDC6" }, { "db_name": "uniprot", "db_id": "Q99741" } ] } ]
[]
[ { "id": "1.0alpha7.train.661.coref0", "entity_ids": [ "1.0alpha7.train.661.ent0_0", "1.0alpha7.train.661.ent1_1" ] }, { "id": "1.0alpha7.train.661.coref1", "entity_ids": [ "1.0alpha7.train.661.ent2_0" ] }, { "id": "1.0alpha7.train.661.coref2", "entity_ids": [ "1.0alpha7.train.661.ent3_0", "1.0alpha7.train.661.ent4_0" ] }, { "id": "1.0alpha7.train.661.coref3", "entity_ids": [ "1.0alpha7.train.661.ent5_0" ] }, { "id": "1.0alpha7.train.661.coref4", "entity_ids": [ "1.0alpha7.train.661.ent6_0", "1.0alpha7.train.661.ent7_1" ] }, { "id": "1.0alpha7.train.661.coref5", "entity_ids": [ "1.0alpha7.train.661.ent8_0" ] }, { "id": "1.0alpha7.train.661.coref6", "entity_ids": [ "1.0alpha7.train.661.ent9_0" ] }, { "id": "1.0alpha7.train.661.coref7", "entity_ids": [ "1.0alpha7.train.661.ent10_0" ] }, { "id": "1.0alpha7.train.661.coref8", "entity_ids": [ "1.0alpha7.train.661.ent11_0" ] } ]
[ { "id": "1.0alpha7.train.661.rel0s1.0alpha7.train.661.ent5_0.o1.0alpha7.train.661.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.661.ent5_0", "arg2_id": "1.0alpha7.train.661.ent6_0", "normalized": [] }, { "id": "1.0alpha7.train.661.rel0s1.0alpha7.train.661.ent5_0.o1.0alpha7.train.661.ent7_1", "type": "bind", "arg1_id": "1.0alpha7.train.661.ent5_0", "arg2_id": "1.0alpha7.train.661.ent7_1", "normalized": [] }, { "id": "1.0alpha7.train.661.rel1s1.0alpha7.train.661.ent6_0.o1.0alpha7.train.661.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.661.ent6_0", "arg2_id": "1.0alpha7.train.661.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.661.rel1s1.0alpha7.train.661.ent7_1.o1.0alpha7.train.661.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.661.ent7_1", "arg2_id": "1.0alpha7.train.661.ent8_0", "normalized": [] } ]
1.0alpha7.train.662
11491345
[ { "id": "1.0alpha7.train.662.sent", "type": "sentence", "text": [ " We therefore examined whether p140mDia can bind to profilin and whether the binding of p140mDia to profilin is dependent on Rho, because the fragment isolated by Reinhard et al. (1995) corresponds to the C-terminal part of p140mDia. " ], "offsets": [ [ 0, 244 ] ] } ]
[ { "id": "1.0alpha7.train.662.ent0_0", "type": "protein", "text": [ "p140mDia" ], "offsets": [ [ 32, 40 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "O08808" } ] }, { "id": "1.0alpha7.train.662.ent1_1", "type": "protein", "text": [ "p140mDia" ], "offsets": [ [ 91, 99 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "O08808" } ] }, { "id": "1.0alpha7.train.662.ent2_2", "type": "protein", "text": [ "p140mDia" ], "offsets": [ [ 233, 241 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "O08808" } ] }, { "id": "1.0alpha7.train.662.ent3_0", "type": "protein-family", "text": [ "Rho" ], "offsets": [ [ 130, 133 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR004665" } ] }, { "id": "1.0alpha7.train.662.ent4_0", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 54, 62 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] }, { "id": "1.0alpha7.train.662.ent5_1", "type": "protein-family", "text": [ "profilin" ], "offsets": [ [ 104, 112 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR005455" } ] } ]
[]
[ { "id": "1.0alpha7.train.662.coref0", "entity_ids": [ "1.0alpha7.train.662.ent0_0", "1.0alpha7.train.662.ent1_1", "1.0alpha7.train.662.ent2_2" ] }, { "id": "1.0alpha7.train.662.coref1", "entity_ids": [ "1.0alpha7.train.662.ent3_0" ] }, { "id": "1.0alpha7.train.662.coref2", "entity_ids": [ "1.0alpha7.train.662.ent4_0", "1.0alpha7.train.662.ent5_1" ] } ]
[ { "id": "1.0alpha7.train.662.rel0s1.0alpha7.train.662.ent0_0.o1.0alpha7.train.662.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.662.ent0_0", "arg2_id": "1.0alpha7.train.662.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.662.rel0s1.0alpha7.train.662.ent0_0.o1.0alpha7.train.662.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.662.ent0_0", "arg2_id": "1.0alpha7.train.662.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.662.rel0s1.0alpha7.train.662.ent1_1.o1.0alpha7.train.662.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.662.ent1_1", "arg2_id": "1.0alpha7.train.662.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.662.rel0s1.0alpha7.train.662.ent1_1.o1.0alpha7.train.662.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.662.ent1_1", "arg2_id": "1.0alpha7.train.662.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.662.rel0s1.0alpha7.train.662.ent2_2.o1.0alpha7.train.662.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.662.ent2_2", "arg2_id": "1.0alpha7.train.662.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.662.rel0s1.0alpha7.train.662.ent2_2.o1.0alpha7.train.662.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.662.ent2_2", "arg2_id": "1.0alpha7.train.662.ent5_1", "normalized": [] } ]
1.0alpha7.train.663
17543578
[ { "id": "1.0alpha7.train.663.sent", "type": "sentence", "text": [ "The aim of the present study was to characterize the heme-binding properties of RFABG." ], "offsets": [ [ 0, 88 ] ] } ]
[ { "id": "1.0alpha7.train.663.ent0_0", "type": "protein", "text": [ "RFABG" ], "offsets": [ [ 82, 87 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q9V496" } ] }, { "id": "1.0alpha7.train.663.ent1_0", "type": "chemical", "text": [ "heme" ], "offsets": [ [ 54, 58 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "26945" } ] } ]
[]
[ { "id": "1.0alpha7.train.663.coref0", "entity_ids": [ "1.0alpha7.train.663.ent0_0" ] }, { "id": "1.0alpha7.train.663.coref1", "entity_ids": [ "1.0alpha7.train.663.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.663.rel0s1.0alpha7.train.663.ent0_0.o1.0alpha7.train.663.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.663.ent0_0", "arg2_id": "1.0alpha7.train.663.ent1_0", "normalized": [] } ]
1.0alpha7.train.664
3350378
[ { "id": "1.0alpha7.train.664.sent", "type": "sentence", "text": [ " Reciprocal coimmunoprecipitation studies revealed a similar result (Fig. 2), indicating that the binding of Dvl2 to Axin did not affect the interaction of Axin with MEKK1-C. " ], "offsets": [ [ 0, 181 ] ] } ]
[ { "id": "1.0alpha7.train.664.ent0_0", "type": "protein", "text": [ "Dvl2" ], "offsets": [ [ 111, 115 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1856" }, { "db_name": "hgnc", "db_id": "DVL2" }, { "db_name": "uniprot", "db_id": "O14641" } ] }, { "id": "1.0alpha7.train.664.ent1_0", "type": "protein", "text": [ "MEKK1" ], "offsets": [ [ 171, 176 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "4214" }, { "db_name": "hgnc", "db_id": "MAP3K1" }, { "db_name": "uniprot", "db_id": "Q13233" } ] }, { "id": "1.0alpha7.train.664.ent2_0", "type": "protein", "text": [ "Axin" ], "offsets": [ [ 120, 124 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8312" }, { "db_name": "hgnc", "db_id": "AXIN1" }, { "db_name": "uniprot", "db_id": "O15169" } ] }, { "id": "1.0alpha7.train.664.ent3_1", "type": "protein", "text": [ "Axin" ], "offsets": [ [ 160, 164 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8312" }, { "db_name": "hgnc", "db_id": "AXIN1" }, { "db_name": "uniprot", "db_id": "O15169" } ] }, { "id": "1.0alpha7.train.664.ent4_0", "type": "protein-region", "text": [ "MEKK1-C" ], "offsets": [ [ 171, 178 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.664.coref0", "entity_ids": [ "1.0alpha7.train.664.ent0_0" ] }, { "id": "1.0alpha7.train.664.coref1", "entity_ids": [ "1.0alpha7.train.664.ent1_0" ] }, { "id": "1.0alpha7.train.664.coref2", "entity_ids": [ "1.0alpha7.train.664.ent2_0", "1.0alpha7.train.664.ent3_1" ] }, { "id": "1.0alpha7.train.664.coref3", "entity_ids": [ "1.0alpha7.train.664.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.664.rel0s1.0alpha7.train.664.ent0_0.o1.0alpha7.train.664.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.664.ent0_0", "arg2_id": "1.0alpha7.train.664.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.664.rel0s1.0alpha7.train.664.ent0_0.o1.0alpha7.train.664.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.664.ent0_0", "arg2_id": "1.0alpha7.train.664.ent3_1", "normalized": [] }, { "id": "1.0alpha7.train.664.rel1s1.0alpha7.train.664.ent1_0.o1.0alpha7.train.664.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.664.ent1_0", "arg2_id": "1.0alpha7.train.664.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.664.rel1s1.0alpha7.train.664.ent1_0.o1.0alpha7.train.664.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.664.ent1_0", "arg2_id": "1.0alpha7.train.664.ent3_1", "normalized": [] } ]
1.0alpha7.train.665
15500080
[ { "id": "1.0alpha7.train.665.sent", "type": "sentence", "text": [ "To determine whether Aos binds DER directly, a binding assay was performed with the baculovirus-generated DER-Fc recombinant protein (Fig. 1A). " ], "offsets": [ [ 0, 149 ] ] } ]
[ { "id": "1.0alpha7.train.665.ent0_0", "type": "experimental-construct", "text": [ "DER-Fc" ], "offsets": [ [ 109, 115 ] ], "normalized": [] }, { "id": "1.0alpha7.train.665.ent1_0", "type": "protein", "text": [ "DER" ], "offsets": [ [ 33, 36 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "79139" }, { "db_name": "hgnc", "db_id": "DERL1" }, { "db_name": "uniprot", "db_id": "Q9BUN8" } ] }, { "id": "1.0alpha7.train.665.ent2_1", "type": "protein", "text": [ "DER" ], "offsets": [ [ 109, 112 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "79139" }, { "db_name": "hgnc", "db_id": "DERL1" }, { "db_name": "uniprot", "db_id": "Q9BUN8" } ] }, { "id": "1.0alpha7.train.665.ent3_0", "type": "protein-domain", "text": [ "Fc" ], "offsets": [ [ 113, 115 ] ], "normalized": [] }, { "id": "1.0alpha7.train.665.ent4_0", "type": "protein", "text": [ "Aos" ], "offsets": [ [ 22, 25 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q00805" } ] } ]
[]
[ { "id": "1.0alpha7.train.665.coref0", "entity_ids": [ "1.0alpha7.train.665.ent0_0" ] }, { "id": "1.0alpha7.train.665.coref1", "entity_ids": [ "1.0alpha7.train.665.ent1_0", "1.0alpha7.train.665.ent2_1" ] }, { "id": "1.0alpha7.train.665.coref2", "entity_ids": [ "1.0alpha7.train.665.ent3_0" ] }, { "id": "1.0alpha7.train.665.coref3", "entity_ids": [ "1.0alpha7.train.665.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.665.rel0s1.0alpha7.train.665.ent1_0.o1.0alpha7.train.665.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.665.ent1_0", "arg2_id": "1.0alpha7.train.665.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.665.rel0s1.0alpha7.train.665.ent2_1.o1.0alpha7.train.665.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.665.ent2_1", "arg2_id": "1.0alpha7.train.665.ent4_0", "normalized": [] } ]
1.0alpha7.train.666
2907803
[ { "id": "1.0alpha7.train.666.sent", "type": "sentence", "text": [ " To examine the possibility that delta S1 bound to actin without quenching the pyrene fluorescence, the binding of actin and S1 was directly determined by pelleting experiments (Fig. 3). " ], "offsets": [ [ 0, 194 ] ] } ]
[ { "id": "1.0alpha7.train.666.ent0_0", "type": "protein-domain", "text": [ "delta S1" ], "offsets": [ [ 34, 42 ] ], "normalized": [] }, { "id": "1.0alpha7.train.666.ent1_0", "type": "protein-domain", "text": [ "S1" ], "offsets": [ [ 40, 42 ] ], "normalized": [] }, { "id": "1.0alpha7.train.666.ent2_1", "type": "protein-domain", "text": [ "S1" ], "offsets": [ [ 130, 132 ] ], "normalized": [] }, { "id": "1.0alpha7.train.666.ent3_0", "type": "protein", "text": [ "actin" ], "offsets": [ [ 53, 58 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "58" }, { "db_name": "hgnc", "db_id": "ACTA1" }, { "db_name": "uniprot", "db_id": "P68133" } ] }, { "id": "1.0alpha7.train.666.ent4_1", "type": "protein", "text": [ "actin" ], "offsets": [ [ 119, 124 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "58" }, { "db_name": "hgnc", "db_id": "ACTA1" }, { "db_name": "uniprot", "db_id": "P68133" } ] } ]
[]
[ { "id": "1.0alpha7.train.666.coref0", "entity_ids": [ "1.0alpha7.train.666.ent0_0", "1.0alpha7.train.666.ent1_0", "1.0alpha7.train.666.ent2_1" ] }, { "id": "1.0alpha7.train.666.coref1", "entity_ids": [ "1.0alpha7.train.666.ent3_0", "1.0alpha7.train.666.ent4_1" ] } ]
[ { "id": "1.0alpha7.train.666.rel0s1.0alpha7.train.666.ent0_0.o1.0alpha7.train.666.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.666.ent0_0", "arg2_id": "1.0alpha7.train.666.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.666.rel0s1.0alpha7.train.666.ent0_0.o1.0alpha7.train.666.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.666.ent0_0", "arg2_id": "1.0alpha7.train.666.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.666.rel0s1.0alpha7.train.666.ent1_0.o1.0alpha7.train.666.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.666.ent1_0", "arg2_id": "1.0alpha7.train.666.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.666.rel0s1.0alpha7.train.666.ent1_0.o1.0alpha7.train.666.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.666.ent1_0", "arg2_id": "1.0alpha7.train.666.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.666.rel0s1.0alpha7.train.666.ent2_1.o1.0alpha7.train.666.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.666.ent2_1", "arg2_id": "1.0alpha7.train.666.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.666.rel0s1.0alpha7.train.666.ent2_1.o1.0alpha7.train.666.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.666.ent2_1", "arg2_id": "1.0alpha7.train.666.ent4_1", "normalized": [] } ]
1.0alpha7.train.667
4221957
[ { "id": "1.0alpha7.train.667.sent", "type": "sentence", "text": [ "NIK Binds to NHE1" ], "offsets": [ [ 0, 17 ] ] } ]
[ { "id": "1.0alpha7.train.667.ent0_0", "type": "protein", "text": [ "NIK" ], "offsets": [ [ 0, 3 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "9020" }, { "db_name": "hgnc", "db_id": "MAP3K14" }, { "db_name": "uniprot", "db_id": "Q99558" } ] }, { "id": "1.0alpha7.train.667.ent1_0", "type": "protein", "text": [ "NHE1" ], "offsets": [ [ 13, 17 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6548" }, { "db_name": "hgnc", "db_id": "SLC9A1" }, { "db_name": "uniprot", "db_id": "P19634" } ] } ]
[]
[ { "id": "1.0alpha7.train.667.coref0", "entity_ids": [ "1.0alpha7.train.667.ent0_0" ] }, { "id": "1.0alpha7.train.667.coref1", "entity_ids": [ "1.0alpha7.train.667.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.667.rel0s1.0alpha7.train.667.ent0_0.o1.0alpha7.train.667.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.667.ent0_0", "arg2_id": "1.0alpha7.train.667.ent1_0", "normalized": [] } ]
1.0alpha7.train.668
9155513
[ { "id": "1.0alpha7.train.668.sent", "type": "sentence", "text": [ " In this way, cadherins that are not bound to beta-catenin would be turned over rapidly, while cadherins bound to beta-catenin could proceed to the cell surface to participate in adherens junctions. " ], "offsets": [ [ 0, 208 ] ] } ]
[ { "id": "1.0alpha7.train.668.ent0_0", "type": "protein-family", "text": [ "beta-catenin" ], "offsets": [ [ 49, 61 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR013284" } ] }, { "id": "1.0alpha7.train.668.ent1_1", "type": "protein-family", "text": [ "beta-catenin" ], "offsets": [ [ 120, 132 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR013284" } ] }, { "id": "1.0alpha7.train.668.ent2_0", "type": "protein-family", "text": [ "cadherins" ], "offsets": [ [ 15, 24 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR039808" } ] }, { "id": "1.0alpha7.train.668.ent3_1", "type": "protein-family", "text": [ "cadherins" ], "offsets": [ [ 100, 109 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR039808" } ] } ]
[]
[ { "id": "1.0alpha7.train.668.coref0", "entity_ids": [ "1.0alpha7.train.668.ent0_0", "1.0alpha7.train.668.ent1_1" ] }, { "id": "1.0alpha7.train.668.coref1", "entity_ids": [ "1.0alpha7.train.668.ent2_0", "1.0alpha7.train.668.ent3_1" ] } ]
[ { "id": "1.0alpha7.train.668.rel0s1.0alpha7.train.668.ent0_0.o1.0alpha7.train.668.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.668.ent0_0", "arg2_id": "1.0alpha7.train.668.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.668.rel0s1.0alpha7.train.668.ent0_0.o1.0alpha7.train.668.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.668.ent0_0", "arg2_id": "1.0alpha7.train.668.ent3_1", "normalized": [] }, { "id": "1.0alpha7.train.668.rel0s1.0alpha7.train.668.ent1_1.o1.0alpha7.train.668.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.668.ent1_1", "arg2_id": "1.0alpha7.train.668.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.668.rel0s1.0alpha7.train.668.ent1_1.o1.0alpha7.train.668.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.668.ent1_1", "arg2_id": "1.0alpha7.train.668.ent3_1", "normalized": [] } ]
1.0alpha7.train.669
9040575
[ { "id": "1.0alpha7.train.669.sent", "type": "sentence", "text": [ "LEF-1 Binds to Armadillo" ], "offsets": [ [ 0, 24 ] ] } ]
[ { "id": "1.0alpha7.train.669.ent0_0", "type": "protein", "text": [ "LEF-1" ], "offsets": [ [ 0, 5 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "51176" }, { "db_name": "hgnc", "db_id": "LEF1" }, { "db_name": "uniprot", "db_id": "Q9UJU2" } ] }, { "id": "1.0alpha7.train.669.ent1_0", "type": "protein-motif", "text": [ "Armadillo" ], "offsets": [ [ 15, 24 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR000225" } ] } ]
[]
[ { "id": "1.0alpha7.train.669.coref0", "entity_ids": [ "1.0alpha7.train.669.ent0_0" ] }, { "id": "1.0alpha7.train.669.coref1", "entity_ids": [ "1.0alpha7.train.669.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.669.rel0s1.0alpha7.train.669.ent0_0.o1.0alpha7.train.669.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.669.ent0_0", "arg2_id": "1.0alpha7.train.669.ent1_0", "normalized": [] } ]
1.0alpha7.train.670
7548205
[ { "id": "1.0alpha7.train.670.sent", "type": "sentence", "text": [ " Because binding of AC and tropomyosin to actin filaments is mutually exclusive, the regulation of this conversion process is extremely important to understand. " ], "offsets": [ [ 0, 167 ] ] } ]
[ { "id": "1.0alpha7.train.670.ent0_0", "type": "protein", "text": [ "actin" ], "offsets": [ [ 45, 50 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "58" }, { "db_name": "hgnc", "db_id": "ACTA1" }, { "db_name": "uniprot", "db_id": "P68133" } ] }, { "id": "1.0alpha7.train.670.ent1_0", "type": "protein-family", "text": [ "AC" ], "offsets": [ [ 21, 23 ] ], "normalized": [] }, { "id": "1.0alpha7.train.670.ent2_0", "type": "protein", "text": [ "actin filaments" ], "offsets": [ [ 45, 60 ] ], "normalized": [] }, { "id": "1.0alpha7.train.670.ent3_0", "type": "protein-family", "text": [ "tropomyosin" ], "offsets": [ [ 29, 40 ] ], "normalized": [ { "db_name": "pfam", "db_id": "PF00261" } ] } ]
[]
[ { "id": "1.0alpha7.train.670.coref0", "entity_ids": [ "1.0alpha7.train.670.ent0_0" ] }, { "id": "1.0alpha7.train.670.coref1", "entity_ids": [ "1.0alpha7.train.670.ent1_0" ] }, { "id": "1.0alpha7.train.670.coref2", "entity_ids": [ "1.0alpha7.train.670.ent2_0" ] }, { "id": "1.0alpha7.train.670.coref3", "entity_ids": [ "1.0alpha7.train.670.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.670.rel0s1.0alpha7.train.670.ent1_0.o1.0alpha7.train.670.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.670.ent1_0", "arg2_id": "1.0alpha7.train.670.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.670.rel1s1.0alpha7.train.670.ent2_0.o1.0alpha7.train.670.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.670.ent2_0", "arg2_id": "1.0alpha7.train.670.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.670.rel2s1.0alpha7.train.670.ent0_0.o1.0alpha7.train.670.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.670.ent0_0", "arg2_id": "1.0alpha7.train.670.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.670.rel3s1.0alpha7.train.670.ent0_0.o1.0alpha7.train.670.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.670.ent0_0", "arg2_id": "1.0alpha7.train.670.ent3_0", "normalized": [] } ]
1.0alpha7.train.671
19831887
[ { "id": "1.0alpha7.train.671.sent", "type": "sentence", "text": [ " The block A ( Fig. 4) contains the consensus sequence involved in the binding of the ADP moiety of FAD ( Wierenga et al., 1986). " ], "offsets": [ [ 0, 133 ] ] } ]
[ { "id": "1.0alpha7.train.671.ent0_0", "type": "chemical", "text": [ "FAD" ], "offsets": [ [ 101, 104 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "643975" } ] }, { "id": "1.0alpha7.train.671.ent1_0", "type": "chemical", "text": [ "ADP" ], "offsets": [ [ 87, 90 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6022" } ] } ]
[]
[ { "id": "1.0alpha7.train.671.coref0", "entity_ids": [ "1.0alpha7.train.671.ent0_0" ] }, { "id": "1.0alpha7.train.671.coref1", "entity_ids": [ "1.0alpha7.train.671.ent1_0" ] } ]
[]
1.0alpha7.train.672
86387
[ { "id": "1.0alpha7.train.672.sent", "type": "sentence", "text": [ " Therefore, deactivation of CF1 in vivo probably involves an alternative form of regulation such as the binding of ADP to the β-subunit, which has previously been shown to deactivate CF1 enzymatic activity in the dark (16)." ], "offsets": [ [ 0, 223 ] ] } ]
[ { "id": "1.0alpha7.train.672.ent0_0", "type": "protein", "text": [ "β-subunit" ], "offsets": [ [ 126, 135 ] ], "normalized": [] }, { "id": "1.0alpha7.train.672.ent1_0", "type": "chemical", "text": [ "ADP" ], "offsets": [ [ 115, 118 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6022" } ] }, { "id": "1.0alpha7.train.672.ent2_0", "type": "protein-complex", "text": [ "CF1" ], "offsets": [ [ 28, 31 ] ], "normalized": [] }, { "id": "1.0alpha7.train.672.ent3_1", "type": "protein-complex", "text": [ "CF1" ], "offsets": [ [ 183, 186 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.672.coref0", "entity_ids": [ "1.0alpha7.train.672.ent0_0" ] }, { "id": "1.0alpha7.train.672.coref1", "entity_ids": [ "1.0alpha7.train.672.ent1_0" ] }, { "id": "1.0alpha7.train.672.coref2", "entity_ids": [ "1.0alpha7.train.672.ent2_0", "1.0alpha7.train.672.ent3_1" ] } ]
[ { "id": "1.0alpha7.train.672.rel0s1.0alpha7.train.672.ent0_0.o1.0alpha7.train.672.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.672.ent0_0", "arg2_id": "1.0alpha7.train.672.ent1_0", "normalized": [] } ]
1.0alpha7.train.673
6510331
[ { "id": "1.0alpha7.train.673.sent", "type": "sentence", "text": [ " ( B) The transcriptional activation of the TCF reporter was inhibited by 12S E1A, but not by mutant E1A that does not bind p300. " ], "offsets": [ [ 0, 134 ] ] } ]
[ { "id": "1.0alpha7.train.673.ent0_0", "type": "protein-family", "text": [ "TCF" ], "offsets": [ [ 45, 48 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR024940" } ] }, { "id": "1.0alpha7.train.673.ent1_0", "type": "protein", "text": [ "mutant E1A" ], "offsets": [ [ 96, 106 ] ], "normalized": [] }, { "id": "1.0alpha7.train.673.ent2_0", "type": "protein", "text": [ "12S E1A" ], "offsets": [ [ 75, 82 ] ], "normalized": [] }, { "id": "1.0alpha7.train.673.ent3_0", "type": "protein", "text": [ "p300" ], "offsets": [ [ 127, 131 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2033" }, { "db_name": "hgnc", "db_id": "EP300" }, { "db_name": "uniprot", "db_id": "Q09472" } ] } ]
[]
[ { "id": "1.0alpha7.train.673.coref0", "entity_ids": [ "1.0alpha7.train.673.ent0_0" ] }, { "id": "1.0alpha7.train.673.coref1", "entity_ids": [ "1.0alpha7.train.673.ent1_0" ] }, { "id": "1.0alpha7.train.673.coref2", "entity_ids": [ "1.0alpha7.train.673.ent2_0" ] }, { "id": "1.0alpha7.train.673.coref3", "entity_ids": [ "1.0alpha7.train.673.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.673.rel0s1.0alpha7.train.673.ent1_0.o1.0alpha7.train.673.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.673.ent1_0", "arg2_id": "1.0alpha7.train.673.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.673.rel1s1.0alpha7.train.673.ent2_0.o1.0alpha7.train.673.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.673.ent2_0", "arg2_id": "1.0alpha7.train.673.ent3_0", "normalized": [] } ]
1.0alpha7.train.674
24668037
[ { "id": "1.0alpha7.train.674.sent", "type": "sentence", "text": [ "To test this possibility further, myc epitope-tagged Rheb was ectopically expressed in COS cells with either HA epitope-tagged TSC1 or HA epitope-tagged TSC2 alone or with both tumor suppressors together, and the ratio of GTP to GDP bound Rheb was determined." ], "offsets": [ [ 0, 259 ] ] } ]
[ { "id": "1.0alpha7.train.674.ent0_0", "type": "chemical", "text": [ "GDP" ], "offsets": [ [ 229, 232 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398618" } ] }, { "id": "1.0alpha7.train.674.ent1_0", "type": "experiment-tag", "text": [ "HA epitope-tagged" ], "offsets": [ [ 109, 126 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent2_1", "type": "experiment-tag", "text": [ "HA epitope-tagged" ], "offsets": [ [ 135, 152 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent3_0", "type": "experiment-tag", "text": [ "myc epitope-tagged" ], "offsets": [ [ 34, 52 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent4_0", "type": "cell", "text": [ "COS" ], "offsets": [ [ 87, 90 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent5_0", "type": "chemical", "text": [ "GTP" ], "offsets": [ [ 222, 225 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398633" } ] }, { "id": "1.0alpha7.train.674.ent6_0", "type": "experimental-construct", "text": [ "myc epitope-tagged Rheb" ], "offsets": [ [ 34, 57 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent7_0", "type": "protein", "text": [ "Rheb" ], "offsets": [ [ 53, 57 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6009" }, { "db_name": "hgnc", "db_id": "RHEB" }, { "db_name": "uniprot", "db_id": "Q15382" } ] }, { "id": "1.0alpha7.train.674.ent8_1", "type": "protein", "text": [ "Rheb" ], "offsets": [ [ 239, 243 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6009" }, { "db_name": "hgnc", "db_id": "RHEB" }, { "db_name": "uniprot", "db_id": "Q15382" } ] }, { "id": "1.0alpha7.train.674.ent9_0", "type": "protein", "text": [ "TSC2" ], "offsets": [ [ 153, 157 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7249" }, { "db_name": "hgnc", "db_id": "TSC2" }, { "db_name": "uniprot", "db_id": "P49815" } ] }, { "id": "1.0alpha7.train.674.ent10_0", "type": "experimental-construct", "text": [ "HA epitope-tagged TSC1" ], "offsets": [ [ 109, 131 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent11_0", "type": "experimental-construct", "text": [ "HA epitope-tagged TSC2" ], "offsets": [ [ 135, 157 ] ], "normalized": [] }, { "id": "1.0alpha7.train.674.ent12_0", "type": "protein", "text": [ "TSC1" ], "offsets": [ [ 127, 131 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "7248" }, { "db_name": "hgnc", "db_id": "TSC1" } ] } ]
[]
[ { "id": "1.0alpha7.train.674.coref0", "entity_ids": [ "1.0alpha7.train.674.ent0_0" ] }, { "id": "1.0alpha7.train.674.coref1", "entity_ids": [ "1.0alpha7.train.674.ent1_0", "1.0alpha7.train.674.ent2_1" ] }, { "id": "1.0alpha7.train.674.coref2", "entity_ids": [ "1.0alpha7.train.674.ent3_0" ] }, { "id": "1.0alpha7.train.674.coref3", "entity_ids": [ "1.0alpha7.train.674.ent4_0" ] }, { "id": "1.0alpha7.train.674.coref4", "entity_ids": [ "1.0alpha7.train.674.ent5_0" ] }, { "id": "1.0alpha7.train.674.coref5", "entity_ids": [ "1.0alpha7.train.674.ent6_0" ] }, { "id": "1.0alpha7.train.674.coref6", "entity_ids": [ "1.0alpha7.train.674.ent7_0", "1.0alpha7.train.674.ent8_1" ] }, { "id": "1.0alpha7.train.674.coref7", "entity_ids": [ "1.0alpha7.train.674.ent9_0" ] }, { "id": "1.0alpha7.train.674.coref8", "entity_ids": [ "1.0alpha7.train.674.ent10_0" ] }, { "id": "1.0alpha7.train.674.coref9", "entity_ids": [ "1.0alpha7.train.674.ent11_0" ] }, { "id": "1.0alpha7.train.674.coref10", "entity_ids": [ "1.0alpha7.train.674.ent12_0" ] } ]
[ { "id": "1.0alpha7.train.674.rel0s1.0alpha7.train.674.ent5_0.o1.0alpha7.train.674.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.674.ent5_0", "arg2_id": "1.0alpha7.train.674.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.674.rel0s1.0alpha7.train.674.ent5_0.o1.0alpha7.train.674.ent8_1", "type": "bind", "arg1_id": "1.0alpha7.train.674.ent5_0", "arg2_id": "1.0alpha7.train.674.ent8_1", "normalized": [] }, { "id": "1.0alpha7.train.674.rel1s1.0alpha7.train.674.ent0_0.o1.0alpha7.train.674.ent7_0", "type": "bind", "arg1_id": "1.0alpha7.train.674.ent0_0", "arg2_id": "1.0alpha7.train.674.ent7_0", "normalized": [] }, { "id": "1.0alpha7.train.674.rel1s1.0alpha7.train.674.ent0_0.o1.0alpha7.train.674.ent8_1", "type": "bind", "arg1_id": "1.0alpha7.train.674.ent0_0", "arg2_id": "1.0alpha7.train.674.ent8_1", "normalized": [] } ]
1.0alpha7.train.675
8713138
[ { "id": "1.0alpha7.train.675.sent", "type": "sentence", "text": [ "Studies have also shown that cyclin D1 can directly bind the estrogen receptor and enhance transcription of specific genes [ 53]." ], "offsets": [ [ 0, 131 ] ] } ]
[ { "id": "1.0alpha7.train.675.ent0_0", "type": "protein", "text": [ "cyclin D1" ], "offsets": [ [ 30, 39 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "595" }, { "db_name": "hgnc", "db_id": "CCND1" }, { "db_name": "uniprot", "db_id": "P24385" } ] }, { "id": "1.0alpha7.train.675.ent1_0", "type": "protein", "text": [ "estrogen receptor" ], "offsets": [ [ 63, 80 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2099" }, { "db_name": "hgnc", "db_id": "ESR1" }, { "db_name": "uniprot", "db_id": "P03372" } ] } ]
[]
[ { "id": "1.0alpha7.train.675.coref0", "entity_ids": [ "1.0alpha7.train.675.ent0_0" ] }, { "id": "1.0alpha7.train.675.coref1", "entity_ids": [ "1.0alpha7.train.675.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.675.rel0s1.0alpha7.train.675.ent0_0.o1.0alpha7.train.675.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.675.ent0_0", "arg2_id": "1.0alpha7.train.675.ent1_0", "normalized": [] } ]
1.0alpha7.train.676
4108971
[ { "id": "1.0alpha7.train.676.sent", "type": "sentence", "text": [ "Previous studies have shown that mutation of the consensus CtBP binding motif PLDLS to PLASS blocks CtBP binding to E1A (40)." ], "offsets": [ [ 0, 125 ] ] } ]
[ { "id": "1.0alpha7.train.676.ent0_0", "type": "protein", "text": [ "E1A" ], "offsets": [ [ 116, 119 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "P03255" } ] }, { "id": "1.0alpha7.train.676.ent1_0", "type": "protein-motif", "text": [ "PLDLS" ], "offsets": [ [ 78, 83 ] ], "normalized": [] }, { "id": "1.0alpha7.train.676.ent2_0", "type": "protein", "text": [ "CtBP" ], "offsets": [ [ 59, 63 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q13363" } ] }, { "id": "1.0alpha7.train.676.ent3_1", "type": "protein", "text": [ "CtBP" ], "offsets": [ [ 100, 104 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q13363" } ] }, { "id": "1.0alpha7.train.676.ent4_0", "type": "protein-motif", "text": [ "PLASS" ], "offsets": [ [ 87, 92 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.676.coref0", "entity_ids": [ "1.0alpha7.train.676.ent0_0" ] }, { "id": "1.0alpha7.train.676.coref1", "entity_ids": [ "1.0alpha7.train.676.ent1_0" ] }, { "id": "1.0alpha7.train.676.coref2", "entity_ids": [ "1.0alpha7.train.676.ent2_0", "1.0alpha7.train.676.ent3_1" ] }, { "id": "1.0alpha7.train.676.coref3", "entity_ids": [ "1.0alpha7.train.676.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.676.rel0s1.0alpha7.train.676.ent1_0.o1.0alpha7.train.676.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.676.ent1_0", "arg2_id": "1.0alpha7.train.676.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.676.rel1s1.0alpha7.train.676.ent0_0.o1.0alpha7.train.676.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.676.ent0_0", "arg2_id": "1.0alpha7.train.676.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.676.rel1s1.0alpha7.train.676.ent0_0.o1.0alpha7.train.676.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.676.ent0_0", "arg2_id": "1.0alpha7.train.676.ent3_1", "normalized": [] } ]
1.0alpha7.train.677
4626021
[ { "id": "1.0alpha7.train.677.sent", "type": "sentence", "text": [ "A similar effect of Mg2+ was observed for the binding of FKBP12 to the RyR1 ( 18)." ], "offsets": [ [ 0, 84 ] ] } ]
[ { "id": "1.0alpha7.train.677.ent0_0", "type": "protein", "text": [ "RyR1" ], "offsets": [ [ 73, 77 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6261" }, { "db_name": "hgnc", "db_id": "RYR1" }, { "db_name": "uniprot", "db_id": "P21817" } ] }, { "id": "1.0alpha7.train.677.ent1_0", "type": "chemical", "text": [ "Mg2+" ], "offsets": [ [ 20, 24 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5462224" } ] }, { "id": "1.0alpha7.train.677.ent2_0", "type": "protein", "text": [ "FKBP12" ], "offsets": [ [ 58, 64 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2280" }, { "db_name": "hgnc", "db_id": "FKBP1A" }, { "db_name": "uniprot", "db_id": "P62942" } ] } ]
[]
[ { "id": "1.0alpha7.train.677.coref0", "entity_ids": [ "1.0alpha7.train.677.ent0_0" ] }, { "id": "1.0alpha7.train.677.coref1", "entity_ids": [ "1.0alpha7.train.677.ent1_0" ] }, { "id": "1.0alpha7.train.677.coref2", "entity_ids": [ "1.0alpha7.train.677.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.677.rel0s1.0alpha7.train.677.ent0_0.o1.0alpha7.train.677.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.677.ent0_0", "arg2_id": "1.0alpha7.train.677.ent2_0", "normalized": [] } ]
1.0alpha7.train.678
11491303
[ { "id": "1.0alpha7.train.678.sent", "type": "sentence", "text": [ "Specific association of p140mDia with the GTP-bound form of RhoA in vitro" ], "offsets": [ [ 0, 73 ] ] } ]
[ { "id": "1.0alpha7.train.678.ent0_0", "type": "chemical", "text": [ "GTP" ], "offsets": [ [ 42, 45 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "135398633" } ] }, { "id": "1.0alpha7.train.678.ent1_0", "type": "protein", "text": [ "RhoA" ], "offsets": [ [ 60, 64 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "387" }, { "db_name": "hgnc", "db_id": "RHOA" }, { "db_name": "uniprot", "db_id": "P61586" } ] }, { "id": "1.0alpha7.train.678.ent2_0", "type": "protein", "text": [ "p140mDia" ], "offsets": [ [ 24, 32 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "O08808" } ] } ]
[]
[ { "id": "1.0alpha7.train.678.coref0", "entity_ids": [ "1.0alpha7.train.678.ent0_0" ] }, { "id": "1.0alpha7.train.678.coref1", "entity_ids": [ "1.0alpha7.train.678.ent1_0" ] }, { "id": "1.0alpha7.train.678.coref2", "entity_ids": [ "1.0alpha7.train.678.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.678.rel0s1.0alpha7.train.678.ent1_0.o1.0alpha7.train.678.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.678.ent1_0", "arg2_id": "1.0alpha7.train.678.ent2_0", "normalized": [] } ]
1.0alpha7.train.679
11491303
[ { "id": "1.0alpha7.train.679.sent", "type": "sentence", "text": [ "The polypeptide encoded by the cDNA isolated above was expressed in Escherichia coli either as a His-tagged protein (His6-cl.50) or as a GST fusion protein (GST-cl.50). " ], "offsets": [ [ 0, 169 ] ] } ]
[ { "id": "1.0alpha7.train.679.ent0_0", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 137, 140 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent1_1", "type": "experiment-tag", "text": [ "GST" ], "offsets": [ [ 157, 160 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent2_0", "type": "experimental-construct", "text": [ "GST-cl.50" ], "offsets": [ [ 157, 166 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent3_0", "type": "experiment-tag", "text": [ "His6" ], "offsets": [ [ 117, 121 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent4_0", "type": "protein", "text": [ "cl.50" ], "offsets": [ [ 122, 127 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent5_1", "type": "protein", "text": [ "cl.50" ], "offsets": [ [ 161, 166 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent6_0", "type": "experimental-construct", "text": [ "His6-cl.50" ], "offsets": [ [ 117, 127 ] ], "normalized": [] }, { "id": "1.0alpha7.train.679.ent7_0", "type": "DNA", "text": [ "cDNA" ], "offsets": [ [ 31, 35 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.679.coref0", "entity_ids": [ "1.0alpha7.train.679.ent0_0", "1.0alpha7.train.679.ent1_1" ] }, { "id": "1.0alpha7.train.679.coref1", "entity_ids": [ "1.0alpha7.train.679.ent2_0" ] }, { "id": "1.0alpha7.train.679.coref2", "entity_ids": [ "1.0alpha7.train.679.ent3_0" ] }, { "id": "1.0alpha7.train.679.coref3", "entity_ids": [ "1.0alpha7.train.679.ent4_0", "1.0alpha7.train.679.ent5_1" ] }, { "id": "1.0alpha7.train.679.coref4", "entity_ids": [ "1.0alpha7.train.679.ent6_0" ] }, { "id": "1.0alpha7.train.679.coref5", "entity_ids": [ "1.0alpha7.train.679.ent7_0" ] } ]
[]
1.0alpha7.train.680
23643695
[ { "id": "1.0alpha7.train.680.sent", "type": "sentence", "text": [ " After incubating dSlo and PKAc cotransfected cells with a membrane-permeable form of PKI, much less PKAc was detected in anti-dSlo immunoprecipitates, indicating that PKI inhibits binding between dSlo and PKAc (Fig. 7 B). " ], "offsets": [ [ 0, 233 ] ] } ]
[ { "id": "1.0alpha7.train.680.ent0_0", "type": "protein", "text": [ "dSlo" ], "offsets": [ [ 19, 23 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q03720" } ] }, { "id": "1.0alpha7.train.680.ent1_1", "type": "protein", "text": [ "dSlo" ], "offsets": [ [ 132, 136 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q03720" } ] }, { "id": "1.0alpha7.train.680.ent2_2", "type": "protein", "text": [ "dSlo" ], "offsets": [ [ 204, 208 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q03720" } ] }, { "id": "1.0alpha7.train.680.ent3_0", "type": "protein-family", "text": [ "PKI" ], "offsets": [ [ 89, 92 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR004171" } ] }, { "id": "1.0alpha7.train.680.ent4_1", "type": "protein-family", "text": [ "PKI" ], "offsets": [ [ 174, 177 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR004171" } ] }, { "id": "1.0alpha7.train.680.ent5_0", "type": "protein", "text": [ "PKAc" ], "offsets": [ [ 29, 33 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5566" }, { "db_name": "hgnc", "db_id": "PRKACA" }, { "db_name": "uniprot", "db_id": "P17612" } ] }, { "id": "1.0alpha7.train.680.ent6_1", "type": "protein", "text": [ "PKAc" ], "offsets": [ [ 105, 109 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5566" }, { "db_name": "hgnc", "db_id": "PRKACA" }, { "db_name": "uniprot", "db_id": "P17612" } ] }, { "id": "1.0alpha7.train.680.ent7_2", "type": "protein", "text": [ "PKAc" ], "offsets": [ [ 214, 218 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5566" }, { "db_name": "hgnc", "db_id": "PRKACA" }, { "db_name": "uniprot", "db_id": "P17612" } ] } ]
[]
[ { "id": "1.0alpha7.train.680.coref0", "entity_ids": [ "1.0alpha7.train.680.ent0_0", "1.0alpha7.train.680.ent1_1", "1.0alpha7.train.680.ent2_2" ] }, { "id": "1.0alpha7.train.680.coref1", "entity_ids": [ "1.0alpha7.train.680.ent3_0", "1.0alpha7.train.680.ent4_1" ] }, { "id": "1.0alpha7.train.680.coref2", "entity_ids": [ "1.0alpha7.train.680.ent5_0", "1.0alpha7.train.680.ent6_1", "1.0alpha7.train.680.ent7_2" ] } ]
[ { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent0_0.o1.0alpha7.train.680.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent0_0", "arg2_id": "1.0alpha7.train.680.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent0_0.o1.0alpha7.train.680.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent0_0", "arg2_id": "1.0alpha7.train.680.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent0_0.o1.0alpha7.train.680.ent7_2", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent0_0", "arg2_id": "1.0alpha7.train.680.ent7_2", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent1_1.o1.0alpha7.train.680.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent1_1", "arg2_id": "1.0alpha7.train.680.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent1_1.o1.0alpha7.train.680.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent1_1", "arg2_id": "1.0alpha7.train.680.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent1_1.o1.0alpha7.train.680.ent7_2", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent1_1", "arg2_id": "1.0alpha7.train.680.ent7_2", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent2_2.o1.0alpha7.train.680.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent2_2", "arg2_id": "1.0alpha7.train.680.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent2_2.o1.0alpha7.train.680.ent6_1", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent2_2", "arg2_id": "1.0alpha7.train.680.ent6_1", "normalized": [] }, { "id": "1.0alpha7.train.680.rel0s1.0alpha7.train.680.ent2_2.o1.0alpha7.train.680.ent7_2", "type": "bind", "arg1_id": "1.0alpha7.train.680.ent2_2", "arg2_id": "1.0alpha7.train.680.ent7_2", "normalized": [] } ]
1.0alpha7.train.681
2068047
[ { "id": "1.0alpha7.train.681.sent", "type": "sentence", "text": [ "To characterize the GroEL-coat protein ternary complex, we calculated the percent of the total coat protein initially bound to GroEL at each temperature from co-immunoprecipitation experiments." ], "offsets": [ [ 0, 193 ] ] } ]
[ { "id": "1.0alpha7.train.681.ent0_0", "type": "protein-complex", "text": [ "GroEL" ], "offsets": [ [ 20, 25 ] ], "normalized": [] }, { "id": "1.0alpha7.train.681.ent1_1", "type": "protein-complex", "text": [ "GroEL" ], "offsets": [ [ 127, 132 ] ], "normalized": [] }, { "id": "1.0alpha7.train.681.ent2_0", "type": "protein-complex", "text": [ "GroEL-coat protein ternary complex" ], "offsets": [ [ 20, 54 ] ], "normalized": [] }, { "id": "1.0alpha7.train.681.ent3_0", "type": "protein-family", "text": [ "coat protein" ], "offsets": [ [ 26, 38 ] ], "normalized": [] }, { "id": "1.0alpha7.train.681.ent4_1", "type": "protein-family", "text": [ "coat protein" ], "offsets": [ [ 95, 107 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.681.coref0", "entity_ids": [ "1.0alpha7.train.681.ent0_0", "1.0alpha7.train.681.ent1_1" ] }, { "id": "1.0alpha7.train.681.coref1", "entity_ids": [ "1.0alpha7.train.681.ent2_0" ] }, { "id": "1.0alpha7.train.681.coref2", "entity_ids": [ "1.0alpha7.train.681.ent3_0", "1.0alpha7.train.681.ent4_1" ] } ]
[ { "id": "1.0alpha7.train.681.rel0s1.0alpha7.train.681.ent0_0.o1.0alpha7.train.681.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.681.ent0_0", "arg2_id": "1.0alpha7.train.681.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.681.rel0s1.0alpha7.train.681.ent0_0.o1.0alpha7.train.681.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.681.ent0_0", "arg2_id": "1.0alpha7.train.681.ent4_1", "normalized": [] }, { "id": "1.0alpha7.train.681.rel0s1.0alpha7.train.681.ent1_1.o1.0alpha7.train.681.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.681.ent1_1", "arg2_id": "1.0alpha7.train.681.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.681.rel0s1.0alpha7.train.681.ent1_1.o1.0alpha7.train.681.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.681.ent1_1", "arg2_id": "1.0alpha7.train.681.ent4_1", "normalized": [] } ]
1.0alpha7.train.682
9270316
[ { "id": "1.0alpha7.train.682.sent", "type": "sentence", "text": [ " Similarly, N-terminal Iip35 and KCNK3 peptides bind beta-COP (Figures 6A and 6C) while C-terminal KCNK3 peptides do not (not shown). " ], "offsets": [ [ 0, 142 ] ] } ]
[ { "id": "1.0alpha7.train.682.ent0_0", "type": "protein", "text": [ "Iip35" ], "offsets": [ [ 23, 28 ] ], "normalized": [] }, { "id": "1.0alpha7.train.682.ent1_0", "type": "protein", "text": [ "beta-COP" ], "offsets": [ [ 55, 63 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1315" }, { "db_name": "hgnc", "db_id": "COPB1" }, { "db_name": "uniprot", "db_id": "P53618" } ] }, { "id": "1.0alpha7.train.682.ent2_0", "type": "protein", "text": [ "KCNK3" ], "offsets": [ [ 34, 39 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3777" }, { "db_name": "hgnc", "db_id": "KCNK3" } ] }, { "id": "1.0alpha7.train.682.ent3_1", "type": "protein", "text": [ "KCNK3" ], "offsets": [ [ 106, 111 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3777" }, { "db_name": "hgnc", "db_id": "KCNK3" } ] } ]
[]
[ { "id": "1.0alpha7.train.682.coref0", "entity_ids": [ "1.0alpha7.train.682.ent0_0" ] }, { "id": "1.0alpha7.train.682.coref1", "entity_ids": [ "1.0alpha7.train.682.ent1_0" ] }, { "id": "1.0alpha7.train.682.coref2", "entity_ids": [ "1.0alpha7.train.682.ent2_0", "1.0alpha7.train.682.ent3_1" ] } ]
[ { "id": "1.0alpha7.train.682.rel0s1.0alpha7.train.682.ent1_0.o1.0alpha7.train.682.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.682.ent1_0", "arg2_id": "1.0alpha7.train.682.ent2_0", "normalized": [] }, { "id": "1.0alpha7.train.682.rel0s1.0alpha7.train.682.ent1_0.o1.0alpha7.train.682.ent3_1", "type": "bind", "arg1_id": "1.0alpha7.train.682.ent1_0", "arg2_id": "1.0alpha7.train.682.ent3_1", "normalized": [] } ]
1.0alpha7.train.683
8465549
[ { "id": "1.0alpha7.train.683.sent", "type": "sentence", "text": [ " Lipoprotein retention in atherosclerosis-prone regions is thought to be caused by the binding of LDLs to proteoglycans ( PGs) of the extracellular matrix, which prevents their egress after crossing the endothelial barrier. " ], "offsets": [ [ 0, 230 ] ] } ]
[ { "id": "1.0alpha7.train.683.ent0_0", "type": "protein-complex", "text": [ "LDLs" ], "offsets": [ [ 103, 107 ] ], "normalized": [] }, { "id": "1.0alpha7.train.683.ent1_0", "type": "protein-complex", "text": [ "proteoglycans" ], "offsets": [ [ 111, 124 ] ], "normalized": [] }, { "id": "1.0alpha7.train.683.ent2_0", "type": "protein-complex", "text": [ "PGs" ], "offsets": [ [ 127, 130 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.683.coref0", "entity_ids": [ "1.0alpha7.train.683.ent0_0" ] }, { "id": "1.0alpha7.train.683.coref1", "entity_ids": [ "1.0alpha7.train.683.ent1_0", "1.0alpha7.train.683.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.683.rel0s1.0alpha7.train.683.ent0_0.o1.0alpha7.train.683.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.683.ent0_0", "arg2_id": "1.0alpha7.train.683.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.683.rel0s1.0alpha7.train.683.ent0_0.o1.0alpha7.train.683.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.683.ent0_0", "arg2_id": "1.0alpha7.train.683.ent2_0", "normalized": [] } ]
1.0alpha7.train.684
5090134
[ { "id": "1.0alpha7.train.684.sent", "type": "sentence", "text": [ " The two upper proteins were identified as GSK-3alpha and GSK-3beta from their size, their cross-reactivity with anti-GSK-3 antibodies (Fig. 2 B), and their depletion by axin beads (Fig. 3 A), a GSK-3 selective affinity binding matrix ( 34). " ], "offsets": [ [ 0, 250 ] ] } ]
[ { "id": "1.0alpha7.train.684.ent0_0", "type": "protein-family", "text": [ "axin" ], "offsets": [ [ 175, 179 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR029797" } ] }, { "id": "1.0alpha7.train.684.ent1_0", "type": "protein-complex", "text": [ "GSK-3" ], "offsets": [ [ 121, 126 ] ], "normalized": [] }, { "id": "1.0alpha7.train.684.ent2_1", "type": "protein-complex", "text": [ "GSK-3" ], "offsets": [ [ 202, 207 ] ], "normalized": [] }, { "id": "1.0alpha7.train.684.ent3_0", "type": "protein", "text": [ "GSK-3alpha" ], "offsets": [ [ 44, 54 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2931" }, { "db_name": "hgnc", "db_id": "GSK3A" }, { "db_name": "uniprot", "db_id": "P49840" } ] }, { "id": "1.0alpha7.train.684.ent4_0", "type": "reagent", "text": [ "anti-GSK-3 antibodies" ], "offsets": [ [ 116, 137 ] ], "normalized": [] }, { "id": "1.0alpha7.train.684.ent5_0", "type": "reagent", "text": [ "axin beads" ], "offsets": [ [ 175, 185 ] ], "normalized": [] }, { "id": "1.0alpha7.train.684.ent6_0", "type": "protein", "text": [ "GSK-3beta" ], "offsets": [ [ 60, 69 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "2932" }, { "db_name": "hgnc", "db_id": "GSK3B" }, { "db_name": "uniprot", "db_id": "P49841" } ] } ]
[]
[ { "id": "1.0alpha7.train.684.coref0", "entity_ids": [ "1.0alpha7.train.684.ent0_0" ] }, { "id": "1.0alpha7.train.684.coref1", "entity_ids": [ "1.0alpha7.train.684.ent1_0", "1.0alpha7.train.684.ent2_1" ] }, { "id": "1.0alpha7.train.684.coref2", "entity_ids": [ "1.0alpha7.train.684.ent3_0" ] }, { "id": "1.0alpha7.train.684.coref3", "entity_ids": [ "1.0alpha7.train.684.ent4_0" ] }, { "id": "1.0alpha7.train.684.coref4", "entity_ids": [ "1.0alpha7.train.684.ent5_0" ] }, { "id": "1.0alpha7.train.684.coref5", "entity_ids": [ "1.0alpha7.train.684.ent6_0" ] } ]
[]
1.0alpha7.train.685
702062
[ { "id": "1.0alpha7.train.685.sent", "type": "sentence", "text": [ "Consistently, computational and experimental studies on the receptor for bradykinin, a peptide bioregulator that competes successfully with NT in binding to rat mast cell receptors ( 51), also suggested the bradykinin binding site located in the third extracellular loop ( 22)." ], "offsets": [ [ 0, 280 ] ] } ]
[ { "id": "1.0alpha7.train.685.ent0_0", "type": "protein-family", "text": [ "rat mast cell receptors" ], "offsets": [ [ 159, 182 ] ], "normalized": [] }, { "id": "1.0alpha7.train.685.ent1_0", "type": "peptide", "text": [ "NT" ], "offsets": [ [ 142, 144 ] ], "normalized": [] }, { "id": "1.0alpha7.train.685.ent2_0", "type": "peptide", "text": [ "bradykinin" ], "offsets": [ [ 73, 83 ] ], "normalized": [] }, { "id": "1.0alpha7.train.685.ent3_1", "type": "peptide", "text": [ "bradykinin" ], "offsets": [ [ 210, 220 ] ], "normalized": [] }, { "id": "1.0alpha7.train.685.ent4_0", "type": "protein", "text": [ "receptor for bradykinin" ], "offsets": [ [ 60, 83 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "623" }, { "db_name": "hgnc", "db_id": "BDKRB1" }, { "db_name": "uniprot", "db_id": "P46663" } ] } ]
[]
[ { "id": "1.0alpha7.train.685.coref0", "entity_ids": [ "1.0alpha7.train.685.ent0_0" ] }, { "id": "1.0alpha7.train.685.coref1", "entity_ids": [ "1.0alpha7.train.685.ent1_0" ] }, { "id": "1.0alpha7.train.685.coref2", "entity_ids": [ "1.0alpha7.train.685.ent2_0", "1.0alpha7.train.685.ent3_1" ] }, { "id": "1.0alpha7.train.685.coref3", "entity_ids": [ "1.0alpha7.train.685.ent4_0" ] } ]
[ { "id": "1.0alpha7.train.685.rel0s1.0alpha7.train.685.ent0_0.o1.0alpha7.train.685.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.685.ent0_0", "arg2_id": "1.0alpha7.train.685.ent1_0", "normalized": [] } ]
1.0alpha7.train.686
20544220
[ { "id": "1.0alpha7.train.686.sent", "type": "sentence", "text": [ "The subtle conformational changes of the side chains of MeBm2t1 and the positional displacement of Ala103 of CyPA imply that MeBm2t1-CsA does not naturally fit the binding site and may thus account for the 100-fold weaker binding of MeBm2t1-CsA relative to native CsA." ], "offsets": [ [ 0, 268 ] ] } ]
[ { "id": "1.0alpha7.train.686.ent0_0", "type": "chemical", "text": [ "MeBm2t1-CsA" ], "offsets": [ [ 125, 136 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6436251" } ] }, { "id": "1.0alpha7.train.686.ent1_1", "type": "chemical", "text": [ "MeBm2t1-CsA" ], "offsets": [ [ 233, 244 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6436251" } ] }, { "id": "1.0alpha7.train.686.ent2_0", "type": "chemical", "text": [ "MeBm2t1" ], "offsets": [ [ 56, 63 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6436251" } ] }, { "id": "1.0alpha7.train.686.ent3_1", "type": "chemical", "text": [ "MeBm2t1" ], "offsets": [ [ 125, 132 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6436251" } ] }, { "id": "1.0alpha7.train.686.ent4_2", "type": "chemical", "text": [ "MeBm2t1" ], "offsets": [ [ 233, 240 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "6436251" } ] }, { "id": "1.0alpha7.train.686.ent5_0", "type": "chemical", "text": [ "CsA" ], "offsets": [ [ 133, 136 ] ], "normalized": [] }, { "id": "1.0alpha7.train.686.ent6_1", "type": "chemical", "text": [ "CsA" ], "offsets": [ [ 241, 244 ] ], "normalized": [] }, { "id": "1.0alpha7.train.686.ent7_2", "type": "chemical", "text": [ "CsA" ], "offsets": [ [ 264, 267 ] ], "normalized": [] }, { "id": "1.0alpha7.train.686.ent8_0", "type": "protein", "text": [ "CyPA" ], "offsets": [ [ 109, 113 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5478" }, { "db_name": "hgnc", "db_id": "PPIA" }, { "db_name": "uniprot", "db_id": "P62937" } ] } ]
[]
[ { "id": "1.0alpha7.train.686.coref0", "entity_ids": [ "1.0alpha7.train.686.ent0_0", "1.0alpha7.train.686.ent1_1" ] }, { "id": "1.0alpha7.train.686.coref1", "entity_ids": [ "1.0alpha7.train.686.ent2_0", "1.0alpha7.train.686.ent3_1", "1.0alpha7.train.686.ent4_2" ] }, { "id": "1.0alpha7.train.686.coref2", "entity_ids": [ "1.0alpha7.train.686.ent5_0", "1.0alpha7.train.686.ent6_1", "1.0alpha7.train.686.ent7_2" ] }, { "id": "1.0alpha7.train.686.coref3", "entity_ids": [ "1.0alpha7.train.686.ent8_0" ] } ]
[ { "id": "1.0alpha7.train.686.rel0s1.0alpha7.train.686.ent0_0.o1.0alpha7.train.686.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.686.ent0_0", "arg2_id": "1.0alpha7.train.686.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.686.rel0s1.0alpha7.train.686.ent1_1.o1.0alpha7.train.686.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.686.ent1_1", "arg2_id": "1.0alpha7.train.686.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.686.rel1s1.0alpha7.train.686.ent5_0.o1.0alpha7.train.686.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.686.ent5_0", "arg2_id": "1.0alpha7.train.686.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.686.rel1s1.0alpha7.train.686.ent6_1.o1.0alpha7.train.686.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.686.ent6_1", "arg2_id": "1.0alpha7.train.686.ent8_0", "normalized": [] }, { "id": "1.0alpha7.train.686.rel1s1.0alpha7.train.686.ent7_2.o1.0alpha7.train.686.ent8_0", "type": "bind", "arg1_id": "1.0alpha7.train.686.ent7_2", "arg2_id": "1.0alpha7.train.686.ent8_0", "normalized": [] } ]
1.0alpha7.train.687
1757169
[ { "id": "1.0alpha7.train.687.sent", "type": "sentence", "text": [ "Conversely, insertion of this region from HRG into EGF greatly diminishes binding to the EGF receptor ( 15, 31)." ], "offsets": [ [ 0, 116 ] ] } ]
[ { "id": "1.0alpha7.train.687.ent0_0", "type": "protein", "text": [ "HRG" ], "offsets": [ [ 43, 46 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "3273" }, { "db_name": "hgnc", "db_id": "HRG" }, { "db_name": "uniprot", "db_id": "P04196" } ] }, { "id": "1.0alpha7.train.687.ent1_0", "type": "protein", "text": [ "EGF" ], "offsets": [ [ 53, 56 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1950" }, { "db_name": "hgnc", "db_id": "EGF" }, { "db_name": "uniprot", "db_id": "P01133" } ] }, { "id": "1.0alpha7.train.687.ent2_1", "type": "protein", "text": [ "EGF" ], "offsets": [ [ 92, 95 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1950" }, { "db_name": "hgnc", "db_id": "EGF" }, { "db_name": "uniprot", "db_id": "P01133" } ] }, { "id": "1.0alpha7.train.687.ent3_0", "type": "protein", "text": [ "EGF receptor" ], "offsets": [ [ 92, 104 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1956" }, { "db_name": "hgnc", "db_id": "EGFR" }, { "db_name": "uniprot", "db_id": "P00533" } ] } ]
[]
[ { "id": "1.0alpha7.train.687.coref0", "entity_ids": [ "1.0alpha7.train.687.ent0_0" ] }, { "id": "1.0alpha7.train.687.coref1", "entity_ids": [ "1.0alpha7.train.687.ent1_0", "1.0alpha7.train.687.ent2_1" ] }, { "id": "1.0alpha7.train.687.coref2", "entity_ids": [ "1.0alpha7.train.687.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.687.rel0s1.0alpha7.train.687.ent1_0.o1.0alpha7.train.687.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.687.ent1_0", "arg2_id": "1.0alpha7.train.687.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.687.rel0s1.0alpha7.train.687.ent2_1.o1.0alpha7.train.687.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.687.ent2_1", "arg2_id": "1.0alpha7.train.687.ent3_0", "normalized": [] } ]
1.0alpha7.train.688
8969261
[ { "id": "1.0alpha7.train.688.sent", "type": "sentence", "text": [ "Binding of PC and GAGA Factor at Fab-7 in Drosophila Embryos" ], "offsets": [ [ 0, 60 ] ] } ]
[ { "id": "1.0alpha7.train.688.ent0_0", "type": "protein", "text": [ "PC" ], "offsets": [ [ 11, 13 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5091" }, { "db_name": "hgnc", "db_id": "PC" } ] }, { "id": "1.0alpha7.train.688.ent1_0", "type": "protein", "text": [ "GAGA Factor" ], "offsets": [ [ 18, 29 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q08605" } ] }, { "id": "1.0alpha7.train.688.ent2_0", "type": "DNA", "text": [ "Fab-7" ], "offsets": [ [ 33, 38 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.688.coref0", "entity_ids": [ "1.0alpha7.train.688.ent0_0" ] }, { "id": "1.0alpha7.train.688.coref1", "entity_ids": [ "1.0alpha7.train.688.ent1_0" ] }, { "id": "1.0alpha7.train.688.coref2", "entity_ids": [ "1.0alpha7.train.688.ent2_0" ] } ]
[]
1.0alpha7.train.689
5001926
[ { "id": "1.0alpha7.train.689.sent", "type": "sentence", "text": [ "To test whether Bet v 1 can bind amphiphilic molecules in general, we also examined binding of bis-ANS and SDS." ], "offsets": [ [ 0, 113 ] ] } ]
[ { "id": "1.0alpha7.train.689.ent0_0", "type": "reagent", "text": [ "bis-ANS" ], "offsets": [ [ 96, 103 ] ], "normalized": [] }, { "id": "1.0alpha7.train.689.ent1_0", "type": "protein", "text": [ "Bet v 1" ], "offsets": [ [ 16, 23 ] ], "normalized": [] }, { "id": "1.0alpha7.train.689.ent2_0", "type": "reagent", "text": [ "SDS" ], "offsets": [ [ 109, 112 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.689.coref0", "entity_ids": [ "1.0alpha7.train.689.ent0_0" ] }, { "id": "1.0alpha7.train.689.coref1", "entity_ids": [ "1.0alpha7.train.689.ent1_0" ] }, { "id": "1.0alpha7.train.689.coref2", "entity_ids": [ "1.0alpha7.train.689.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.689.rel0s1.0alpha7.train.689.ent0_0.o1.0alpha7.train.689.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.689.ent0_0", "arg2_id": "1.0alpha7.train.689.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.689.rel1s1.0alpha7.train.689.ent1_0.o1.0alpha7.train.689.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.689.ent1_0", "arg2_id": "1.0alpha7.train.689.ent2_0", "normalized": [] } ]
1.0alpha7.train.690
15475546
[ { "id": "1.0alpha7.train.690.sent", "type": "sentence", "text": [ "It is intriguing to speculate that the PDZ domain is necessary for maintaining the conformation of the DIX domain of Dvl to bind to Axin and that Idax causes a conformational change in Dvl, thereby preventing the binding of Dvl to Axin indirectly." ], "offsets": [ [ 0, 255 ] ] } ]
[ { "id": "1.0alpha7.train.690.ent0_0", "type": "protein", "text": [ "Idax" ], "offsets": [ [ 151, 155 ] ], "normalized": [] }, { "id": "1.0alpha7.train.690.ent1_0", "type": "protein", "text": [ "Dvl" ], "offsets": [ [ 120, 123 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1855" }, { "db_name": "hgnc", "db_id": "DVL1" }, { "db_name": "uniprot", "db_id": "O14640" } ] }, { "id": "1.0alpha7.train.690.ent2_1", "type": "protein", "text": [ "Dvl" ], "offsets": [ [ 191, 194 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1855" }, { "db_name": "hgnc", "db_id": "DVL1" }, { "db_name": "uniprot", "db_id": "O14640" } ] }, { "id": "1.0alpha7.train.690.ent3_2", "type": "protein", "text": [ "Dvl" ], "offsets": [ [ 231, 234 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1855" }, { "db_name": "hgnc", "db_id": "DVL1" }, { "db_name": "uniprot", "db_id": "O14640" } ] }, { "id": "1.0alpha7.train.690.ent4_0", "type": "protein", "text": [ "Axin" ], "offsets": [ [ 136, 140 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8312" }, { "db_name": "hgnc", "db_id": "AXIN1" }, { "db_name": "uniprot", "db_id": "O15169" } ] }, { "id": "1.0alpha7.train.690.ent5_1", "type": "protein", "text": [ "Axin" ], "offsets": [ [ 239, 243 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "8312" }, { "db_name": "hgnc", "db_id": "AXIN1" }, { "db_name": "uniprot", "db_id": "O15169" } ] }, { "id": "1.0alpha7.train.690.ent6_0", "type": "protein-domain", "text": [ "DIX" ], "offsets": [ [ 105, 108 ] ], "normalized": [] }, { "id": "1.0alpha7.train.690.ent7_0", "type": "protein-domain", "text": [ "PDZ" ], "offsets": [ [ 40, 43 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR001478" } ] } ]
[]
[ { "id": "1.0alpha7.train.690.coref0", "entity_ids": [ "1.0alpha7.train.690.ent0_0" ] }, { "id": "1.0alpha7.train.690.coref1", "entity_ids": [ "1.0alpha7.train.690.ent1_0", "1.0alpha7.train.690.ent2_1", "1.0alpha7.train.690.ent3_2" ] }, { "id": "1.0alpha7.train.690.coref2", "entity_ids": [ "1.0alpha7.train.690.ent4_0", "1.0alpha7.train.690.ent5_1" ] }, { "id": "1.0alpha7.train.690.coref3", "entity_ids": [ "1.0alpha7.train.690.ent6_0" ] }, { "id": "1.0alpha7.train.690.coref4", "entity_ids": [ "1.0alpha7.train.690.ent7_0" ] } ]
[ { "id": "1.0alpha7.train.690.rel0s1.0alpha7.train.690.ent1_0.o1.0alpha7.train.690.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent1_0", "arg2_id": "1.0alpha7.train.690.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.690.rel0s1.0alpha7.train.690.ent1_0.o1.0alpha7.train.690.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent1_0", "arg2_id": "1.0alpha7.train.690.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.690.rel0s1.0alpha7.train.690.ent2_1.o1.0alpha7.train.690.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent2_1", "arg2_id": "1.0alpha7.train.690.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.690.rel0s1.0alpha7.train.690.ent2_1.o1.0alpha7.train.690.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent2_1", "arg2_id": "1.0alpha7.train.690.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.690.rel0s1.0alpha7.train.690.ent3_2.o1.0alpha7.train.690.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent3_2", "arg2_id": "1.0alpha7.train.690.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.690.rel0s1.0alpha7.train.690.ent3_2.o1.0alpha7.train.690.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent3_2", "arg2_id": "1.0alpha7.train.690.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.690.rel1s1.0alpha7.train.690.ent0_0.o1.0alpha7.train.690.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent0_0", "arg2_id": "1.0alpha7.train.690.ent1_0", "normalized": [] }, { "id": "1.0alpha7.train.690.rel1s1.0alpha7.train.690.ent0_0.o1.0alpha7.train.690.ent2_1", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent0_0", "arg2_id": "1.0alpha7.train.690.ent2_1", "normalized": [] }, { "id": "1.0alpha7.train.690.rel1s1.0alpha7.train.690.ent0_0.o1.0alpha7.train.690.ent3_2", "type": "bind", "arg1_id": "1.0alpha7.train.690.ent0_0", "arg2_id": "1.0alpha7.train.690.ent3_2", "normalized": [] } ]
1.0alpha7.train.691
24681740
[ { "id": "1.0alpha7.train.691.sent", "type": "sentence", "text": [ "The dissolution of this complex may result in the binding of eIF-4E to eIF-4G and the translational activation of CPE-containing mRNAs." ], "offsets": [ [ 0, 138 ] ] } ]
[ { "id": "1.0alpha7.train.691.ent0_0", "type": "RNA", "text": [ "CPE-containing mRNAs" ], "offsets": [ [ 117, 137 ] ], "normalized": [] }, { "id": "1.0alpha7.train.691.ent1_0", "type": "protein", "text": [ "eIF-4G" ], "offsets": [ [ 73, 79 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1981" }, { "db_name": "hgnc", "db_id": "EIF4G1" }, { "db_name": "uniprot", "db_id": "Q04637" } ] }, { "id": "1.0alpha7.train.691.ent2_0", "type": "RNA", "text": [ "CPE" ], "offsets": [ [ 117, 120 ] ], "normalized": [] }, { "id": "1.0alpha7.train.691.ent3_0", "type": "protein", "text": [ "eIF-4E" ], "offsets": [ [ 62, 68 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "1977" }, { "db_name": "hgnc", "db_id": "EIF4E" }, { "db_name": "uniprot", "db_id": "P06730" } ] } ]
[]
[ { "id": "1.0alpha7.train.691.coref0", "entity_ids": [ "1.0alpha7.train.691.ent0_0" ] }, { "id": "1.0alpha7.train.691.coref1", "entity_ids": [ "1.0alpha7.train.691.ent1_0" ] }, { "id": "1.0alpha7.train.691.coref2", "entity_ids": [ "1.0alpha7.train.691.ent2_0" ] }, { "id": "1.0alpha7.train.691.coref3", "entity_ids": [ "1.0alpha7.train.691.ent3_0" ] } ]
[ { "id": "1.0alpha7.train.691.rel0s1.0alpha7.train.691.ent1_0.o1.0alpha7.train.691.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.691.ent1_0", "arg2_id": "1.0alpha7.train.691.ent3_0", "normalized": [] } ]
1.0alpha7.train.692
6656146
[ { "id": "1.0alpha7.train.692.sent", "type": "sentence", "text": [ "Our results strongly suggest that ATP bound mainly to the CI domain (Fig. 2) and that P loop 1 was a main active site for ATP-binding of KaiC." ], "offsets": [ [ 0, 147 ] ] } ]
[ { "id": "1.0alpha7.train.692.ent0_0", "type": "protein-domain", "text": [ "CI" ], "offsets": [ [ 60, 62 ] ], "normalized": [] }, { "id": "1.0alpha7.train.692.ent1_0", "type": "protein-motif", "text": [ "P loop 1" ], "offsets": [ [ 89, 97 ] ], "normalized": [] }, { "id": "1.0alpha7.train.692.ent2_0", "type": "protein", "text": [ "KaiC" ], "offsets": [ [ 142, 146 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q79PF4" } ] }, { "id": "1.0alpha7.train.692.ent3_0", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 35, 38 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] }, { "id": "1.0alpha7.train.692.ent4_1", "type": "chemical", "text": [ "ATP" ], "offsets": [ [ 126, 129 ] ], "normalized": [ { "db_name": "pubchem:compound", "db_id": "5957" } ] } ]
[]
[ { "id": "1.0alpha7.train.692.coref0", "entity_ids": [ "1.0alpha7.train.692.ent0_0" ] }, { "id": "1.0alpha7.train.692.coref1", "entity_ids": [ "1.0alpha7.train.692.ent1_0" ] }, { "id": "1.0alpha7.train.692.coref2", "entity_ids": [ "1.0alpha7.train.692.ent2_0" ] }, { "id": "1.0alpha7.train.692.coref3", "entity_ids": [ "1.0alpha7.train.692.ent3_0", "1.0alpha7.train.692.ent4_1" ] } ]
[ { "id": "1.0alpha7.train.692.rel0s1.0alpha7.train.692.ent2_0.o1.0alpha7.train.692.ent3_0", "type": "bind", "arg1_id": "1.0alpha7.train.692.ent2_0", "arg2_id": "1.0alpha7.train.692.ent3_0", "normalized": [] }, { "id": "1.0alpha7.train.692.rel0s1.0alpha7.train.692.ent2_0.o1.0alpha7.train.692.ent4_1", "type": "bind", "arg1_id": "1.0alpha7.train.692.ent2_0", "arg2_id": "1.0alpha7.train.692.ent4_1", "normalized": [] } ]
1.0alpha7.train.693
18145790
[ { "id": "1.0alpha7.train.693.sent", "type": "sentence", "text": [ "Interestingly, however, Shs1 can bind to Gin4 and induce Gin4 oligomerization under conditions in which the Cdc11 septin does not bind to Gin4, suggesting that Shs1 can function independently of the other septins. " ], "offsets": [ [ 0, 214 ] ] } ]
[ { "id": "1.0alpha7.train.693.ent0_0", "type": "protein-family", "text": [ "septins" ], "offsets": [ [ 205, 212 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR016491" } ] }, { "id": "1.0alpha7.train.693.ent1_0", "type": "protein", "text": [ "Cdc11 septin" ], "offsets": [ [ 108, 120 ] ], "normalized": [] }, { "id": "1.0alpha7.train.693.ent2_0", "type": "protein", "text": [ "Shs1" ], "offsets": [ [ 24, 28 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q07657" } ] }, { "id": "1.0alpha7.train.693.ent3_1", "type": "protein", "text": [ "Shs1" ], "offsets": [ [ 160, 164 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q07657" } ] }, { "id": "1.0alpha7.train.693.ent4_0", "type": "protein", "text": [ "Gin4" ], "offsets": [ [ 41, 45 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q12263" } ] }, { "id": "1.0alpha7.train.693.ent5_1", "type": "protein", "text": [ "Gin4" ], "offsets": [ [ 57, 61 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q12263" } ] }, { "id": "1.0alpha7.train.693.ent6_2", "type": "protein", "text": [ "Gin4" ], "offsets": [ [ 138, 142 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "Q12263" } ] } ]
[]
[ { "id": "1.0alpha7.train.693.coref0", "entity_ids": [ "1.0alpha7.train.693.ent0_0" ] }, { "id": "1.0alpha7.train.693.coref1", "entity_ids": [ "1.0alpha7.train.693.ent1_0" ] }, { "id": "1.0alpha7.train.693.coref2", "entity_ids": [ "1.0alpha7.train.693.ent2_0", "1.0alpha7.train.693.ent3_1" ] }, { "id": "1.0alpha7.train.693.coref3", "entity_ids": [ "1.0alpha7.train.693.ent4_0", "1.0alpha7.train.693.ent5_1", "1.0alpha7.train.693.ent6_2" ] } ]
[ { "id": "1.0alpha7.train.693.rel0s1.0alpha7.train.693.ent2_0.o1.0alpha7.train.693.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent2_0", "arg2_id": "1.0alpha7.train.693.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.693.rel0s1.0alpha7.train.693.ent2_0.o1.0alpha7.train.693.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent2_0", "arg2_id": "1.0alpha7.train.693.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.693.rel0s1.0alpha7.train.693.ent2_0.o1.0alpha7.train.693.ent6_2", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent2_0", "arg2_id": "1.0alpha7.train.693.ent6_2", "normalized": [] }, { "id": "1.0alpha7.train.693.rel0s1.0alpha7.train.693.ent3_1.o1.0alpha7.train.693.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent3_1", "arg2_id": "1.0alpha7.train.693.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.693.rel0s1.0alpha7.train.693.ent3_1.o1.0alpha7.train.693.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent3_1", "arg2_id": "1.0alpha7.train.693.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.693.rel0s1.0alpha7.train.693.ent3_1.o1.0alpha7.train.693.ent6_2", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent3_1", "arg2_id": "1.0alpha7.train.693.ent6_2", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent4_0.o1.0alpha7.train.693.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent4_0", "arg2_id": "1.0alpha7.train.693.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent4_0.o1.0alpha7.train.693.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent4_0", "arg2_id": "1.0alpha7.train.693.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent4_0.o1.0alpha7.train.693.ent6_2", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent4_0", "arg2_id": "1.0alpha7.train.693.ent6_2", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent5_1.o1.0alpha7.train.693.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent5_1", "arg2_id": "1.0alpha7.train.693.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent5_1.o1.0alpha7.train.693.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent5_1", "arg2_id": "1.0alpha7.train.693.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent5_1.o1.0alpha7.train.693.ent6_2", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent5_1", "arg2_id": "1.0alpha7.train.693.ent6_2", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent6_2.o1.0alpha7.train.693.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent6_2", "arg2_id": "1.0alpha7.train.693.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent6_2.o1.0alpha7.train.693.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent6_2", "arg2_id": "1.0alpha7.train.693.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.693.rel1s1.0alpha7.train.693.ent6_2.o1.0alpha7.train.693.ent6_2", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent6_2", "arg2_id": "1.0alpha7.train.693.ent6_2", "normalized": [] }, { "id": "1.0alpha7.train.693.rel2s1.0alpha7.train.693.ent1_0.o1.0alpha7.train.693.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent1_0", "arg2_id": "1.0alpha7.train.693.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.693.rel2s1.0alpha7.train.693.ent1_0.o1.0alpha7.train.693.ent5_1", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent1_0", "arg2_id": "1.0alpha7.train.693.ent5_1", "normalized": [] }, { "id": "1.0alpha7.train.693.rel2s1.0alpha7.train.693.ent1_0.o1.0alpha7.train.693.ent6_2", "type": "bind", "arg1_id": "1.0alpha7.train.693.ent1_0", "arg2_id": "1.0alpha7.train.693.ent6_2", "normalized": [] } ]
1.0alpha7.train.694
1618474
[ { "id": "1.0alpha7.train.694.sent", "type": "sentence", "text": [ "Recently, several Sp1-related proteins, Sp2, Sp3, and Sp4, that bind to the GC box or GT motif were identified ( 33-35); however, their role in promoter regulation is less defined." ], "offsets": [ [ 0, 186 ] ] } ]
[ { "id": "1.0alpha7.train.694.ent0_0", "type": "protein", "text": [ "Sp1" ], "offsets": [ [ 19, 22 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6667" }, { "db_name": "hgnc", "db_id": "SP1" }, { "db_name": "uniprot", "db_id": "P08047" } ] }, { "id": "1.0alpha7.train.694.ent1_0", "type": "protein", "text": [ "Sp2" ], "offsets": [ [ 42, 45 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6668" }, { "db_name": "hgnc", "db_id": "SP2" }, { "db_name": "uniprot", "db_id": "Q02086" } ] }, { "id": "1.0alpha7.train.694.ent2_0", "type": "protein", "text": [ "Sp3" ], "offsets": [ [ 48, 51 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6670" }, { "db_name": "hgnc", "db_id": "SP3" }, { "db_name": "uniprot", "db_id": "Q02447" } ] }, { "id": "1.0alpha7.train.694.ent3_0", "type": "protein", "text": [ "Sp4" ], "offsets": [ [ 58, 61 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "6671" }, { "db_name": "hgnc", "db_id": "SP4" }, { "db_name": "uniprot", "db_id": "Q02446" } ] }, { "id": "1.0alpha7.train.694.ent4_0", "type": "DNA", "text": [ "GT motif" ], "offsets": [ [ 92, 100 ] ], "normalized": [] }, { "id": "1.0alpha7.train.694.ent5_0", "type": "DNA", "text": [ "GC box" ], "offsets": [ [ 81, 87 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.694.coref0", "entity_ids": [ "1.0alpha7.train.694.ent0_0" ] }, { "id": "1.0alpha7.train.694.coref1", "entity_ids": [ "1.0alpha7.train.694.ent1_0" ] }, { "id": "1.0alpha7.train.694.coref2", "entity_ids": [ "1.0alpha7.train.694.ent2_0" ] }, { "id": "1.0alpha7.train.694.coref3", "entity_ids": [ "1.0alpha7.train.694.ent3_0" ] }, { "id": "1.0alpha7.train.694.coref4", "entity_ids": [ "1.0alpha7.train.694.ent4_0" ] }, { "id": "1.0alpha7.train.694.coref5", "entity_ids": [ "1.0alpha7.train.694.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.694.rel0s1.0alpha7.train.694.ent0_0.o1.0alpha7.train.694.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent0_0", "arg2_id": "1.0alpha7.train.694.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel1s1.0alpha7.train.694.ent1_0.o1.0alpha7.train.694.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent1_0", "arg2_id": "1.0alpha7.train.694.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel2s1.0alpha7.train.694.ent2_0.o1.0alpha7.train.694.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent2_0", "arg2_id": "1.0alpha7.train.694.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel3s1.0alpha7.train.694.ent3_0.o1.0alpha7.train.694.ent5_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent3_0", "arg2_id": "1.0alpha7.train.694.ent5_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel4s1.0alpha7.train.694.ent0_0.o1.0alpha7.train.694.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent0_0", "arg2_id": "1.0alpha7.train.694.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel5s1.0alpha7.train.694.ent1_0.o1.0alpha7.train.694.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent1_0", "arg2_id": "1.0alpha7.train.694.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel6s1.0alpha7.train.694.ent2_0.o1.0alpha7.train.694.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent2_0", "arg2_id": "1.0alpha7.train.694.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.694.rel7s1.0alpha7.train.694.ent3_0.o1.0alpha7.train.694.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.694.ent3_0", "arg2_id": "1.0alpha7.train.694.ent4_0", "normalized": [] } ]
1.0alpha7.train.695
12799747
[ { "id": "1.0alpha7.train.695.sent", "type": "sentence", "text": [ "To further show the specificity of Lef-1 binding to the siamois promoter we performed DNase I footprinting assays by use of Lef-1 HMG domain and the S1234 restriction fragment used in the band shift assays described above." ], "offsets": [ [ 0, 227 ] ] } ]
[ { "id": "1.0alpha7.train.695.ent0_0", "type": "assay", "text": [ "DNase I footprinting" ], "offsets": [ [ 90, 110 ] ], "normalized": [] }, { "id": "1.0alpha7.train.695.ent1_0", "type": "protein", "text": [ "Lef-1" ], "offsets": [ [ 36, 41 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "51176" }, { "db_name": "hgnc", "db_id": "LEF1" }, { "db_name": "uniprot", "db_id": "Q9UJU2" } ] }, { "id": "1.0alpha7.train.695.ent2_1", "type": "protein", "text": [ "Lef-1" ], "offsets": [ [ 129, 134 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "51176" }, { "db_name": "hgnc", "db_id": "LEF1" }, { "db_name": "uniprot", "db_id": "Q9UJU2" } ] }, { "id": "1.0alpha7.train.695.ent3_0", "type": "protein-domain", "text": [ "HMG" ], "offsets": [ [ 135, 138 ] ], "normalized": [] }, { "id": "1.0alpha7.train.695.ent4_0", "type": "DNA", "text": [ "siamois promoter" ], "offsets": [ [ 59, 75 ] ], "normalized": [] }, { "id": "1.0alpha7.train.695.ent5_0", "type": "experiment-tag", "text": [ "S1234 restriction fragment" ], "offsets": [ [ 154, 180 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.695.coref0", "entity_ids": [ "1.0alpha7.train.695.ent0_0" ] }, { "id": "1.0alpha7.train.695.coref1", "entity_ids": [ "1.0alpha7.train.695.ent1_0", "1.0alpha7.train.695.ent2_1" ] }, { "id": "1.0alpha7.train.695.coref2", "entity_ids": [ "1.0alpha7.train.695.ent3_0" ] }, { "id": "1.0alpha7.train.695.coref3", "entity_ids": [ "1.0alpha7.train.695.ent4_0" ] }, { "id": "1.0alpha7.train.695.coref4", "entity_ids": [ "1.0alpha7.train.695.ent5_0" ] } ]
[ { "id": "1.0alpha7.train.695.rel0s1.0alpha7.train.695.ent1_0.o1.0alpha7.train.695.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.695.ent1_0", "arg2_id": "1.0alpha7.train.695.ent4_0", "normalized": [] }, { "id": "1.0alpha7.train.695.rel0s1.0alpha7.train.695.ent2_1.o1.0alpha7.train.695.ent4_0", "type": "bind", "arg1_id": "1.0alpha7.train.695.ent2_1", "arg2_id": "1.0alpha7.train.695.ent4_0", "normalized": [] } ]
1.0alpha7.train.696
16327158
[ { "id": "1.0alpha7.train.696.sent", "type": "sentence", "text": [ "To examine whether dcp-1 mutants were defective in the cytoskeletal reorganization in nurse cells, we stained egg chambers with rhodamine-phalloidin, which binds to filamentous actin (Fig. 4) ( 24)." ], "offsets": [ [ 0, 204 ] ] } ]
[ { "id": "1.0alpha7.train.696.ent0_0", "type": "reagent", "text": [ "rhodamine-phalloidin" ], "offsets": [ [ 132, 152 ] ], "normalized": [] }, { "id": "1.0alpha7.train.696.ent1_0", "type": "protein", "text": [ "dcp-1" ], "offsets": [ [ 21, 26 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "O02002" } ] }, { "id": "1.0alpha7.train.696.ent2_0", "type": "protein", "text": [ "actin" ], "offsets": [ [ 182, 187 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "58" }, { "db_name": "hgnc", "db_id": "ACTA1" }, { "db_name": "uniprot", "db_id": "P68133" } ] } ]
[]
[ { "id": "1.0alpha7.train.696.coref0", "entity_ids": [ "1.0alpha7.train.696.ent0_0" ] }, { "id": "1.0alpha7.train.696.coref1", "entity_ids": [ "1.0alpha7.train.696.ent1_0" ] }, { "id": "1.0alpha7.train.696.coref2", "entity_ids": [ "1.0alpha7.train.696.ent2_0" ] } ]
[ { "id": "1.0alpha7.train.696.rel0s1.0alpha7.train.696.ent0_0.o1.0alpha7.train.696.ent2_0", "type": "bind", "arg1_id": "1.0alpha7.train.696.ent0_0", "arg2_id": "1.0alpha7.train.696.ent2_0", "normalized": [] } ]
1.0alpha7.train.697
13071194
[ { "id": "1.0alpha7.train.697.sent", "type": "sentence", "text": [ "GORLICH, D., P. HENKELIN, R. A. LASKEY, and E. HARTMANN, 1996 A 41 amino acid motif in importin-alpha confers binding to importin-beta and hence transit into the nucleus." ], "offsets": [ [ 0, 173 ] ] } ]
[ { "id": "1.0alpha7.train.697.ent0_0", "type": "protein-family", "text": [ "importin-alpha" ], "offsets": [ [ 89, 103 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR024931" } ] }, { "id": "1.0alpha7.train.697.ent1_0", "type": "protein-family", "text": [ "importin-beta" ], "offsets": [ [ 124, 137 ] ], "normalized": [ { "db_name": "interpro", "db_id": "IPR040122" } ] } ]
[]
[ { "id": "1.0alpha7.train.697.coref0", "entity_ids": [ "1.0alpha7.train.697.ent0_0" ] }, { "id": "1.0alpha7.train.697.coref1", "entity_ids": [ "1.0alpha7.train.697.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.697.rel0s1.0alpha7.train.697.ent0_0.o1.0alpha7.train.697.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.697.ent0_0", "arg2_id": "1.0alpha7.train.697.ent1_0", "normalized": [] } ]
1.0alpha7.train.698
15793083
[ { "id": "1.0alpha7.train.698.sent", "type": "sentence", "text": [ "Rap1 binds to the HIS4 promoter and stimulates both Bas1/Bas2- and Gcn4-dependent HIS4 transcription two- to threefold, especially under uninduced conditions ( 6)." ], "offsets": [ [ 0, 168 ] ] } ]
[ { "id": "1.0alpha7.train.698.ent0_0", "type": "protein", "text": [ "Bas2" ], "offsets": [ [ 60, 64 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "P90925" } ] }, { "id": "1.0alpha7.train.698.ent1_0", "type": "protein", "text": [ "Bas1" ], "offsets": [ [ 55, 59 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "O45137" } ] }, { "id": "1.0alpha7.train.698.ent2_0", "type": "protein", "text": [ "Rap1" ], "offsets": [ [ 0, 4 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5906" }, { "db_name": "hgnc", "db_id": "RAP1A" }, { "db_name": "uniprot", "db_id": "P62834" } ] }, { "id": "1.0alpha7.train.698.ent3_0", "type": "gene", "text": [ "HIS4" ], "offsets": [ [ 20, 24 ] ], "normalized": [] }, { "id": "1.0alpha7.train.698.ent4_1", "type": "gene", "text": [ "HIS4" ], "offsets": [ [ 87, 91 ] ], "normalized": [] }, { "id": "1.0alpha7.train.698.ent5_0", "type": "protein", "text": [ "Gcn4" ], "offsets": [ [ 71, 75 ] ], "normalized": [ { "db_name": "uniprot", "db_id": "P03069" } ] }, { "id": "1.0alpha7.train.698.ent6_0", "type": "DNA", "text": [ "HIS4 promoter" ], "offsets": [ [ 20, 33 ] ], "normalized": [] } ]
[]
[ { "id": "1.0alpha7.train.698.coref0", "entity_ids": [ "1.0alpha7.train.698.ent0_0" ] }, { "id": "1.0alpha7.train.698.coref1", "entity_ids": [ "1.0alpha7.train.698.ent1_0" ] }, { "id": "1.0alpha7.train.698.coref2", "entity_ids": [ "1.0alpha7.train.698.ent2_0" ] }, { "id": "1.0alpha7.train.698.coref3", "entity_ids": [ "1.0alpha7.train.698.ent3_0", "1.0alpha7.train.698.ent4_1" ] }, { "id": "1.0alpha7.train.698.coref4", "entity_ids": [ "1.0alpha7.train.698.ent5_0" ] }, { "id": "1.0alpha7.train.698.coref5", "entity_ids": [ "1.0alpha7.train.698.ent6_0" ] } ]
[ { "id": "1.0alpha7.train.698.rel0s1.0alpha7.train.698.ent2_0.o1.0alpha7.train.698.ent6_0", "type": "bind", "arg1_id": "1.0alpha7.train.698.ent2_0", "arg2_id": "1.0alpha7.train.698.ent6_0", "normalized": [] } ]
1.0alpha7.train.699
5673641
[ { "id": "1.0alpha7.train.699.sent", "type": "sentence", "text": [ "Binding of p110C with PAK1 in Vivo" ], "offsets": [ [ 0, 34 ] ] } ]
[ { "id": "1.0alpha7.train.699.ent0_0", "type": "protein-region", "text": [ "p110C" ], "offsets": [ [ 11, 16 ] ], "normalized": [] }, { "id": "1.0alpha7.train.699.ent1_0", "type": "protein", "text": [ "PAK1" ], "offsets": [ [ 22, 26 ] ], "normalized": [ { "db_name": "NCBI gene", "db_id": "5058" }, { "db_name": "hgnc", "db_id": "PAK1" } ] } ]
[]
[ { "id": "1.0alpha7.train.699.coref0", "entity_ids": [ "1.0alpha7.train.699.ent0_0" ] }, { "id": "1.0alpha7.train.699.coref1", "entity_ids": [ "1.0alpha7.train.699.ent1_0" ] } ]
[ { "id": "1.0alpha7.train.699.rel0s1.0alpha7.train.699.ent0_0.o1.0alpha7.train.699.ent1_0", "type": "bind", "arg1_id": "1.0alpha7.train.699.ent0_0", "arg2_id": "1.0alpha7.train.699.ent1_0", "normalized": [] } ]