id
stringlengths 17
20
| document_id
stringlengths 5
8
| passages
list | entities
list | events
list | coreferences
list | relations
list |
|---|---|---|---|---|---|---|
1.0alpha7.train.900 | 19761891 | [
{
"id": "1.0alpha7.train.900.sent",
"type": "sentence",
"text": [
"(H) Direct binding of Dlt to Par-6, but not to aPKC or Baz."
],
"offsets": [
[
0,
63
]
]
}
] | [
{
"id": "1.0alpha7.train.900.ent0_0",
"type": "protein",
"text": [
"aPKC"
],
"offsets": [
[
50,
54
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5578"
},
{
"db_name": "hgnc",
"db_id": "PRKCA"
},
{
"db_name": "uniprot",
"db_id": "P17252"
}
]
},
{
"id": "1.0alpha7.train.900.ent1_0",
"type": "protein",
"text": [
"Par-6"
],
"offsets": [
[
31,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "50855"
},
{
"db_name": "hgnc",
"db_id": "PARD6A"
},
{
"db_name": "uniprot",
"db_id": "Q9NPB6"
}
]
},
{
"id": "1.0alpha7.train.900.ent2_0",
"type": "protein",
"text": [
"Baz"
],
"offsets": [
[
59,
62
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q9VX75"
}
]
},
{
"id": "1.0alpha7.train.900.ent3_0",
"type": "protein",
"text": [
"Dlt"
],
"offsets": [
[
23,
26
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q8T626"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.900.coref0",
"entity_ids": [
"1.0alpha7.train.900.ent0_0"
]
},
{
"id": "1.0alpha7.train.900.coref1",
"entity_ids": [
"1.0alpha7.train.900.ent1_0"
]
},
{
"id": "1.0alpha7.train.900.coref2",
"entity_ids": [
"1.0alpha7.train.900.ent2_0"
]
},
{
"id": "1.0alpha7.train.900.coref3",
"entity_ids": [
"1.0alpha7.train.900.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.900.rel0s1.0alpha7.train.900.ent1_0.o1.0alpha7.train.900.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.900.ent1_0",
"arg2_id": "1.0alpha7.train.900.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.900.rel1s1.0alpha7.train.900.ent2_0.o1.0alpha7.train.900.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.900.ent2_0",
"arg2_id": "1.0alpha7.train.900.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.900.rel2s1.0alpha7.train.900.ent0_0.o1.0alpha7.train.900.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.900.ent0_0",
"arg2_id": "1.0alpha7.train.900.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.901 | 4891793 | [
{
"id": "1.0alpha7.train.901.sent",
"type": "sentence",
"text": [
"Myristoylated alanine-rich protein kinase C substrate (MARCKS) is a primary and prominent protein substrate for PKC, which binds calmodulin in a calcium-dependent manner and also binds to phospholipid membrane ( 17-22)."
],
"offsets": [
[
0,
222
]
]
}
] | [
{
"id": "1.0alpha7.train.901.ent0_0",
"type": "protein",
"text": [
"Myristoylated alanine-rich protein kinase C substrate"
],
"offsets": [
[
0,
54
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4082"
},
{
"db_name": "hgnc",
"db_id": "MARCKS"
},
{
"db_name": "uniprot",
"db_id": "P29966"
}
]
},
{
"id": "1.0alpha7.train.901.ent1_0",
"type": "protein",
"text": [
"MARCKS"
],
"offsets": [
[
56,
62
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4082"
},
{
"db_name": "hgnc",
"db_id": "MARCKS"
},
{
"db_name": "uniprot",
"db_id": "P29966"
}
]
},
{
"id": "1.0alpha7.train.901.ent2_0",
"type": "amino-acid",
"text": [
"alanine"
],
"offsets": [
[
15,
22
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5950"
}
]
},
{
"id": "1.0alpha7.train.901.ent3_0",
"type": "protein-family",
"text": [
"calmodulin"
],
"offsets": [
[
132,
142
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039030"
}
]
},
{
"id": "1.0alpha7.train.901.ent4_0",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
114,
117
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014375"
}
]
},
{
"id": "1.0alpha7.train.901.ent5_0",
"type": "organelle",
"text": [
"phospholipid membrane"
],
"offsets": [
[
191,
212
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.901.ent6_0",
"type": "chemical",
"text": [
"calcium"
],
"offsets": [
[
148,
155
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.901.coref0",
"entity_ids": [
"1.0alpha7.train.901.ent0_0",
"1.0alpha7.train.901.ent1_0"
]
},
{
"id": "1.0alpha7.train.901.coref1",
"entity_ids": [
"1.0alpha7.train.901.ent2_0"
]
},
{
"id": "1.0alpha7.train.901.coref2",
"entity_ids": [
"1.0alpha7.train.901.ent3_0"
]
},
{
"id": "1.0alpha7.train.901.coref3",
"entity_ids": [
"1.0alpha7.train.901.ent4_0"
]
},
{
"id": "1.0alpha7.train.901.coref4",
"entity_ids": [
"1.0alpha7.train.901.ent5_0"
]
},
{
"id": "1.0alpha7.train.901.coref5",
"entity_ids": [
"1.0alpha7.train.901.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.901.rel0s1.0alpha7.train.901.ent0_0.o1.0alpha7.train.901.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.901.ent0_0",
"arg2_id": "1.0alpha7.train.901.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.901.rel0s1.0alpha7.train.901.ent1_0.o1.0alpha7.train.901.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.901.ent1_0",
"arg2_id": "1.0alpha7.train.901.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.901.rel1s1.0alpha7.train.901.ent0_0.o1.0alpha7.train.901.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.901.ent0_0",
"arg2_id": "1.0alpha7.train.901.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.901.rel1s1.0alpha7.train.901.ent1_0.o1.0alpha7.train.901.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.901.ent1_0",
"arg2_id": "1.0alpha7.train.901.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.901.rel2s1.0alpha7.train.901.ent0_0.o1.0alpha7.train.901.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.901.ent0_0",
"arg2_id": "1.0alpha7.train.901.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.901.rel2s1.0alpha7.train.901.ent1_0.o1.0alpha7.train.901.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.901.ent1_0",
"arg2_id": "1.0alpha7.train.901.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.902 | 7485356 | [
{
"id": "1.0alpha7.train.902.sent",
"type": "sentence",
"text": [
"These subunits bind at high-affinity polyubiquitin chains, in particular those that contain more than four moieties, but they also bind ubiquitin markers."
],
"offsets": [
[
0,
158
]
]
}
] | [] | [] | [] | [] |
1.0alpha7.train.903 | 12787394 | [
{
"id": "1.0alpha7.train.903.sent",
"type": "sentence",
"text": [
"A more likely explanation is that other components of the in vitro transcription reactions (e.g., topoisomerase I) may modify the DNA-binding properties of TFIID and TFIIA, leading to enhanced interactions despite the reduced TATA-Inr spacing."
],
"offsets": [
[
0,
247
]
]
}
] | [
{
"id": "1.0alpha7.train.903.ent0_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
131,
134
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.903.ent1_0",
"type": "DNA",
"text": [
"TATA"
],
"offsets": [
[
230,
234
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.903.ent2_0",
"type": "DNA",
"text": [
"Inr"
],
"offsets": [
[
235,
238
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.903.ent3_0",
"type": "protein-complex",
"text": [
"TFIIA"
],
"offsets": [
[
169,
174
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.903.ent4_0",
"type": "protein",
"text": [
"TFIID"
],
"offsets": [
[
158,
163
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.903.ent5_0",
"type": "DNA",
"text": [
"TATA-Inr spacing"
],
"offsets": [
[
230,
246
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.903.ent6_0",
"type": "protein",
"text": [
"topoisomerase I"
],
"offsets": [
[
99,
114
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7150"
},
{
"db_name": "hgnc",
"db_id": "TOP1"
},
{
"db_name": "uniprot",
"db_id": "P11387"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.903.coref0",
"entity_ids": [
"1.0alpha7.train.903.ent0_0"
]
},
{
"id": "1.0alpha7.train.903.coref1",
"entity_ids": [
"1.0alpha7.train.903.ent1_0"
]
},
{
"id": "1.0alpha7.train.903.coref2",
"entity_ids": [
"1.0alpha7.train.903.ent2_0"
]
},
{
"id": "1.0alpha7.train.903.coref3",
"entity_ids": [
"1.0alpha7.train.903.ent3_0"
]
},
{
"id": "1.0alpha7.train.903.coref4",
"entity_ids": [
"1.0alpha7.train.903.ent4_0"
]
},
{
"id": "1.0alpha7.train.903.coref5",
"entity_ids": [
"1.0alpha7.train.903.ent5_0"
]
},
{
"id": "1.0alpha7.train.903.coref6",
"entity_ids": [
"1.0alpha7.train.903.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.903.rel0s1.0alpha7.train.903.ent0_0.o1.0alpha7.train.903.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.903.ent0_0",
"arg2_id": "1.0alpha7.train.903.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.903.rel1s1.0alpha7.train.903.ent0_0.o1.0alpha7.train.903.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.903.ent0_0",
"arg2_id": "1.0alpha7.train.903.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.904 | 11626324 | [
{
"id": "1.0alpha7.train.904.sent",
"type": "sentence",
"text": [
"APC binds to beta-catenin using series of three 15 amino acid repeat sequences, designated repeats A, B and C, and seven 20 amino acid repeats, designated repeats 1 - 7 (Figure 1A)."
],
"offsets": [
[
0,
183
]
]
}
] | [
{
"id": "1.0alpha7.train.904.ent0_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
0,
3
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.904.ent1_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
14,
26
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.904.coref0",
"entity_ids": [
"1.0alpha7.train.904.ent0_0"
]
},
{
"id": "1.0alpha7.train.904.coref1",
"entity_ids": [
"1.0alpha7.train.904.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.904.rel0s1.0alpha7.train.904.ent0_0.o1.0alpha7.train.904.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.904.ent0_0",
"arg2_id": "1.0alpha7.train.904.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.905 | 725299 | [
{
"id": "1.0alpha7.train.905.sent",
"type": "sentence",
"text": [
"Rac was immunoprecipitated, and following extensive washing the amount of GTP bound to Rac was estimated by scintillation counting. "
],
"offsets": [
[
0,
132
]
]
}
] | [
{
"id": "1.0alpha7.train.905.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
74,
77
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.905.ent1_0",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
0,
3
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
},
{
"id": "1.0alpha7.train.905.ent2_1",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
87,
90
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.905.coref0",
"entity_ids": [
"1.0alpha7.train.905.ent0_0"
]
},
{
"id": "1.0alpha7.train.905.coref1",
"entity_ids": [
"1.0alpha7.train.905.ent1_0",
"1.0alpha7.train.905.ent2_1"
]
}
] | [
{
"id": "1.0alpha7.train.905.rel0s1.0alpha7.train.905.ent0_0.o1.0alpha7.train.905.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.905.ent0_0",
"arg2_id": "1.0alpha7.train.905.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.905.rel0s1.0alpha7.train.905.ent0_0.o1.0alpha7.train.905.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.905.ent0_0",
"arg2_id": "1.0alpha7.train.905.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.906 | 24668209 | [
{
"id": "1.0alpha7.train.906.sent",
"type": "sentence",
"text": [
"The question that arises from these studies is the mechanism by which GTP bound Rheb stimulates the mTOR/S6K/4E-BP signal transduction pathway."
],
"offsets": [
[
0,
143
]
]
}
] | [
{
"id": "1.0alpha7.train.906.ent0_0",
"type": "protein",
"text": [
"GTP bound Rheb"
],
"offsets": [
[
70,
84
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.906.ent1_0",
"type": "protein",
"text": [
"S6K"
],
"offsets": [
[
105,
108
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q94533"
}
]
},
{
"id": "1.0alpha7.train.906.ent2_0",
"type": "process",
"text": [
"mTOR/S6K/4E-BP signal transduction pathway"
],
"offsets": [
[
100,
142
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.906.ent3_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
70,
73
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.906.ent4_0",
"type": "protein",
"text": [
"mTOR"
],
"offsets": [
[
100,
104
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2475"
},
{
"db_name": "hgnc",
"db_id": "MTOR"
},
{
"db_name": "uniprot",
"db_id": "P42345"
}
]
},
{
"id": "1.0alpha7.train.906.ent5_0",
"type": "protein",
"text": [
"Rheb"
],
"offsets": [
[
80,
84
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6009"
},
{
"db_name": "hgnc",
"db_id": "RHEB"
},
{
"db_name": "uniprot",
"db_id": "Q15382"
}
]
},
{
"id": "1.0alpha7.train.906.ent6_0",
"type": "protein",
"text": [
"4E-BP"
],
"offsets": [
[
109,
114
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1978"
},
{
"db_name": "hgnc",
"db_id": "EIF4EBP1"
},
{
"db_name": "uniprot",
"db_id": "Q13541"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.906.coref0",
"entity_ids": [
"1.0alpha7.train.906.ent0_0"
]
},
{
"id": "1.0alpha7.train.906.coref1",
"entity_ids": [
"1.0alpha7.train.906.ent1_0"
]
},
{
"id": "1.0alpha7.train.906.coref2",
"entity_ids": [
"1.0alpha7.train.906.ent2_0"
]
},
{
"id": "1.0alpha7.train.906.coref3",
"entity_ids": [
"1.0alpha7.train.906.ent3_0"
]
},
{
"id": "1.0alpha7.train.906.coref4",
"entity_ids": [
"1.0alpha7.train.906.ent4_0"
]
},
{
"id": "1.0alpha7.train.906.coref5",
"entity_ids": [
"1.0alpha7.train.906.ent5_0"
]
},
{
"id": "1.0alpha7.train.906.coref6",
"entity_ids": [
"1.0alpha7.train.906.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.906.rel0s1.0alpha7.train.906.ent3_0.o1.0alpha7.train.906.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.906.ent3_0",
"arg2_id": "1.0alpha7.train.906.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.907 | 11787552 | [
{
"id": "1.0alpha7.train.907.sent",
"type": "sentence",
"text": [
"Taken together, these findings support a model in which binding of Hsp90 with Apaf-1: (i) induces a potential conformational change in Apaf-1 and (ii) inhibits cyt c/dATP-mediated oligomerization of Apaf-1, and thereby exerts a dominant-negative effect on the function of Apaf-1 to activate procaspase-9. "
],
"offsets": [
[
0,
305
]
]
}
] | [
{
"id": "1.0alpha7.train.907.ent0_0",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
78,
84
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.907.ent1_1",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
135,
141
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.907.ent2_2",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
199,
205
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.907.ent3_3",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
272,
278
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.907.ent4_0",
"type": "protein-family",
"text": [
"Hsp90"
],
"offsets": [
[
67,
72
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001404"
}
]
},
{
"id": "1.0alpha7.train.907.ent5_0",
"type": "protein",
"text": [
"procaspase-9"
],
"offsets": [
[
291,
303
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "842"
},
{
"db_name": "hgnc",
"db_id": "CASP9"
},
{
"db_name": "uniprot",
"db_id": "P55211"
}
]
},
{
"id": "1.0alpha7.train.907.ent6_0",
"type": "protein-family",
"text": [
"cyt c"
],
"offsets": [
[
160,
165
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002327"
}
]
},
{
"id": "1.0alpha7.train.907.ent7_0",
"type": "chemical",
"text": [
"dATP"
],
"offsets": [
[
166,
170
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "15993"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.907.coref0",
"entity_ids": [
"1.0alpha7.train.907.ent0_0",
"1.0alpha7.train.907.ent1_1",
"1.0alpha7.train.907.ent2_2",
"1.0alpha7.train.907.ent3_3"
]
},
{
"id": "1.0alpha7.train.907.coref1",
"entity_ids": [
"1.0alpha7.train.907.ent4_0"
]
},
{
"id": "1.0alpha7.train.907.coref2",
"entity_ids": [
"1.0alpha7.train.907.ent5_0"
]
},
{
"id": "1.0alpha7.train.907.coref3",
"entity_ids": [
"1.0alpha7.train.907.ent6_0"
]
},
{
"id": "1.0alpha7.train.907.coref4",
"entity_ids": [
"1.0alpha7.train.907.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.907.rel0s1.0alpha7.train.907.ent0_0.o1.0alpha7.train.907.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent0_0",
"arg2_id": "1.0alpha7.train.907.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel0s1.0alpha7.train.907.ent1_1.o1.0alpha7.train.907.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent1_1",
"arg2_id": "1.0alpha7.train.907.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel0s1.0alpha7.train.907.ent2_2.o1.0alpha7.train.907.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent2_2",
"arg2_id": "1.0alpha7.train.907.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel0s1.0alpha7.train.907.ent3_3.o1.0alpha7.train.907.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent3_3",
"arg2_id": "1.0alpha7.train.907.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent0_0.o1.0alpha7.train.907.ent0_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent0_0",
"arg2_id": "1.0alpha7.train.907.ent0_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent0_0.o1.0alpha7.train.907.ent1_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent0_0",
"arg2_id": "1.0alpha7.train.907.ent1_1",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent0_0.o1.0alpha7.train.907.ent2_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent0_0",
"arg2_id": "1.0alpha7.train.907.ent2_2",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent0_0.o1.0alpha7.train.907.ent3_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent0_0",
"arg2_id": "1.0alpha7.train.907.ent3_3",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent1_1.o1.0alpha7.train.907.ent0_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent1_1",
"arg2_id": "1.0alpha7.train.907.ent0_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent1_1.o1.0alpha7.train.907.ent1_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent1_1",
"arg2_id": "1.0alpha7.train.907.ent1_1",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent1_1.o1.0alpha7.train.907.ent2_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent1_1",
"arg2_id": "1.0alpha7.train.907.ent2_2",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent1_1.o1.0alpha7.train.907.ent3_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent1_1",
"arg2_id": "1.0alpha7.train.907.ent3_3",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent2_2.o1.0alpha7.train.907.ent0_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent2_2",
"arg2_id": "1.0alpha7.train.907.ent0_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent2_2.o1.0alpha7.train.907.ent1_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent2_2",
"arg2_id": "1.0alpha7.train.907.ent1_1",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent2_2.o1.0alpha7.train.907.ent2_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent2_2",
"arg2_id": "1.0alpha7.train.907.ent2_2",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent2_2.o1.0alpha7.train.907.ent3_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent2_2",
"arg2_id": "1.0alpha7.train.907.ent3_3",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent3_3.o1.0alpha7.train.907.ent0_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent3_3",
"arg2_id": "1.0alpha7.train.907.ent0_0",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent3_3.o1.0alpha7.train.907.ent1_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent3_3",
"arg2_id": "1.0alpha7.train.907.ent1_1",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent3_3.o1.0alpha7.train.907.ent2_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent3_3",
"arg2_id": "1.0alpha7.train.907.ent2_2",
"normalized": []
},
{
"id": "1.0alpha7.train.907.rel1s1.0alpha7.train.907.ent3_3.o1.0alpha7.train.907.ent3_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.907.ent3_3",
"arg2_id": "1.0alpha7.train.907.ent3_3",
"normalized": []
}
] |
1.0alpha7.train.908 | 4585125 | [
{
"id": "1.0alpha7.train.908.sent",
"type": "sentence",
"text": [
"Fig. 1 shows that maximum pNPP hydrolysis is reached at an MKP3 to ERK2 ratio of 1:1, indicating a 1:1 binding stoichiometry between MKP3 and ERK2."
],
"offsets": [
[
0,
147
]
]
}
] | [
{
"id": "1.0alpha7.train.908.ent0_0",
"type": "chemical",
"text": [
"pNPP"
],
"offsets": [
[
26,
30
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "77949"
}
]
},
{
"id": "1.0alpha7.train.908.ent1_0",
"type": "protein",
"text": [
"MKP3"
],
"offsets": [
[
59,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1848"
},
{
"db_name": "hgnc",
"db_id": "DUSP6"
},
{
"db_name": "uniprot",
"db_id": "Q16828"
}
]
},
{
"id": "1.0alpha7.train.908.ent2_1",
"type": "protein",
"text": [
"MKP3"
],
"offsets": [
[
133,
137
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1848"
},
{
"db_name": "hgnc",
"db_id": "DUSP6"
},
{
"db_name": "uniprot",
"db_id": "Q16828"
}
]
},
{
"id": "1.0alpha7.train.908.ent3_0",
"type": "protein",
"text": [
"ERK2"
],
"offsets": [
[
67,
71
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5594"
},
{
"db_name": "hgnc",
"db_id": "MAPK1"
},
{
"db_name": "uniprot",
"db_id": "P28482"
}
]
},
{
"id": "1.0alpha7.train.908.ent4_1",
"type": "protein",
"text": [
"ERK2"
],
"offsets": [
[
142,
146
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5594"
},
{
"db_name": "hgnc",
"db_id": "MAPK1"
},
{
"db_name": "uniprot",
"db_id": "P28482"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.908.coref0",
"entity_ids": [
"1.0alpha7.train.908.ent0_0"
]
},
{
"id": "1.0alpha7.train.908.coref1",
"entity_ids": [
"1.0alpha7.train.908.ent1_0",
"1.0alpha7.train.908.ent2_1"
]
},
{
"id": "1.0alpha7.train.908.coref2",
"entity_ids": [
"1.0alpha7.train.908.ent3_0",
"1.0alpha7.train.908.ent4_1"
]
}
] | [
{
"id": "1.0alpha7.train.908.rel0s1.0alpha7.train.908.ent1_0.o1.0alpha7.train.908.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.908.ent1_0",
"arg2_id": "1.0alpha7.train.908.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.908.rel0s1.0alpha7.train.908.ent1_0.o1.0alpha7.train.908.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.908.ent1_0",
"arg2_id": "1.0alpha7.train.908.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.908.rel0s1.0alpha7.train.908.ent2_1.o1.0alpha7.train.908.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.908.ent2_1",
"arg2_id": "1.0alpha7.train.908.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.908.rel0s1.0alpha7.train.908.ent2_1.o1.0alpha7.train.908.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.908.ent2_1",
"arg2_id": "1.0alpha7.train.908.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.909 | 9737383 | [
{
"id": "1.0alpha7.train.909.sent",
"type": "sentence",
"text": [
"The regions responsible for the in vitro binding of CD43 and CD44 to moesin were narrowed down to their juxta-membrane 20-30-amino acid sequences in the cytoplasmic domain."
],
"offsets": [
[
0,
178
]
]
}
] | [
{
"id": "1.0alpha7.train.909.ent0_0",
"type": "protein",
"text": [
"CD44"
],
"offsets": [
[
64,
68
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "960"
},
{
"db_name": "hgnc",
"db_id": "CD44"
},
{
"db_name": "uniprot",
"db_id": "P16070"
}
]
},
{
"id": "1.0alpha7.train.909.ent1_0",
"type": "protein",
"text": [
"CD43"
],
"offsets": [
[
54,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6693"
},
{
"db_name": "hgnc",
"db_id": "SPN"
},
{
"db_name": "uniprot",
"db_id": "P16150"
}
]
},
{
"id": "1.0alpha7.train.909.ent2_0",
"type": "protein",
"text": [
"moesin"
],
"offsets": [
[
73,
79
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4478"
},
{
"db_name": "hgnc",
"db_id": "MSN"
},
{
"db_name": "uniprot",
"db_id": "P26038"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.909.coref0",
"entity_ids": [
"1.0alpha7.train.909.ent0_0"
]
},
{
"id": "1.0alpha7.train.909.coref1",
"entity_ids": [
"1.0alpha7.train.909.ent1_0"
]
},
{
"id": "1.0alpha7.train.909.coref2",
"entity_ids": [
"1.0alpha7.train.909.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.909.rel0s1.0alpha7.train.909.ent1_0.o1.0alpha7.train.909.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.909.ent1_0",
"arg2_id": "1.0alpha7.train.909.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.909.rel1s1.0alpha7.train.909.ent0_0.o1.0alpha7.train.909.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.909.ent0_0",
"arg2_id": "1.0alpha7.train.909.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.910 | 1091622 | [
{
"id": "1.0alpha7.train.910.sent",
"type": "sentence",
"text": [
"As shown, FLICE2 bound both death receptors, and a substantial increase in binding was observed when FADD was included in the transfections (Fig. 2, panels D and E, lanes 1 and 2)."
],
"offsets": [
[
0,
188
]
]
}
] | [
{
"id": "1.0alpha7.train.910.ent0_0",
"type": "protein",
"text": [
"FLICE2"
],
"offsets": [
[
11,
17
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "843"
},
{
"db_name": "hgnc",
"db_id": "CASP10"
},
{
"db_name": "uniprot",
"db_id": "Q92851"
}
]
},
{
"id": "1.0alpha7.train.910.ent1_0",
"type": "protein-family",
"text": [
"death receptors"
],
"offsets": [
[
30,
45
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.910.ent2_0",
"type": "protein",
"text": [
"FADD"
],
"offsets": [
[
104,
108
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8772"
},
{
"db_name": "hgnc",
"db_id": "FADD"
},
{
"db_name": "uniprot",
"db_id": "Q13158"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.910.coref0",
"entity_ids": [
"1.0alpha7.train.910.ent0_0"
]
},
{
"id": "1.0alpha7.train.910.coref1",
"entity_ids": [
"1.0alpha7.train.910.ent1_0"
]
},
{
"id": "1.0alpha7.train.910.coref2",
"entity_ids": [
"1.0alpha7.train.910.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.910.rel0s1.0alpha7.train.910.ent0_0.o1.0alpha7.train.910.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.910.ent0_0",
"arg2_id": "1.0alpha7.train.910.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.911 | 20472378 | [
{
"id": "1.0alpha7.train.911.sent",
"type": "sentence",
"text": [
"Using equal amounts of DNA probes containing combinations of double mutations which leave only one Sp1 site available for binding, we found that the - 60 site has the highest affinity for Sp1 binding, based on the intensity of the shifted complex (Fig."
],
"offsets": [
[
0,
255
]
]
}
] | [
{
"id": "1.0alpha7.train.911.ent0_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
100,
103
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.911.ent1_1",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
191,
194
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.911.ent2_0",
"type": "experiment-tag",
"text": [
"DNA probes"
],
"offsets": [
[
23,
33
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.911.ent3_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
23,
26
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.911.coref0",
"entity_ids": [
"1.0alpha7.train.911.ent0_0",
"1.0alpha7.train.911.ent1_1"
]
},
{
"id": "1.0alpha7.train.911.coref1",
"entity_ids": [
"1.0alpha7.train.911.ent2_0"
]
},
{
"id": "1.0alpha7.train.911.coref2",
"entity_ids": [
"1.0alpha7.train.911.ent3_0"
]
}
] | [] |
1.0alpha7.train.912 | 2841332 | [
{
"id": "1.0alpha7.train.912.sent",
"type": "sentence",
"text": [
"U2AF-65 kDa binds to the dsx pre-mRNA equally in the presence and absence of the ESE ."
],
"offsets": [
[
0,
88
]
]
}
] | [
{
"id": "1.0alpha7.train.912.ent0_0",
"type": "protein-complex",
"text": [
"U2AF"
],
"offsets": [
[
0,
4
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.912.ent1_0",
"type": "RNA",
"text": [
"dsx pre-mRNA"
],
"offsets": [
[
26,
38
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.912.ent2_0",
"type": "DNA",
"text": [
"ESE"
],
"offsets": [
[
83,
86
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.912.ent3_0",
"type": "protein",
"text": [
"U2AF-65 kDa"
],
"offsets": [
[
0,
11
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "11338"
},
{
"db_name": "hgnc",
"db_id": "U2AF2"
},
{
"db_name": "uniprot",
"db_id": "P26368"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.912.coref0",
"entity_ids": [
"1.0alpha7.train.912.ent0_0"
]
},
{
"id": "1.0alpha7.train.912.coref1",
"entity_ids": [
"1.0alpha7.train.912.ent1_0"
]
},
{
"id": "1.0alpha7.train.912.coref2",
"entity_ids": [
"1.0alpha7.train.912.ent2_0"
]
},
{
"id": "1.0alpha7.train.912.coref3",
"entity_ids": [
"1.0alpha7.train.912.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.912.rel0s1.0alpha7.train.912.ent1_0.o1.0alpha7.train.912.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.912.ent1_0",
"arg2_id": "1.0alpha7.train.912.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.913 | 25196706 | [
{
"id": "1.0alpha7.train.913.sent",
"type": "sentence",
"text": [
"These results indicate that tomosyn binds to syntaxin-1a in a manner competitive with Munc18."
],
"offsets": [
[
0,
95
]
]
}
] | [
{
"id": "1.0alpha7.train.913.ent0_0",
"type": "protein",
"text": [
"syntaxin-1a"
],
"offsets": [
[
47,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.913.ent1_0",
"type": "protein",
"text": [
"tomosyn"
],
"offsets": [
[
29,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "134957"
},
{
"db_name": "hgnc",
"db_id": "STXBP5"
},
{
"db_name": "uniprot",
"db_id": "Q5T5C0"
}
]
},
{
"id": "1.0alpha7.train.913.ent2_0",
"type": "protein",
"text": [
"Munc18"
],
"offsets": [
[
88,
94
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6812"
},
{
"db_name": "hgnc",
"db_id": "STXBP1"
},
{
"db_name": "uniprot",
"db_id": "P61764"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.913.coref0",
"entity_ids": [
"1.0alpha7.train.913.ent0_0"
]
},
{
"id": "1.0alpha7.train.913.coref1",
"entity_ids": [
"1.0alpha7.train.913.ent1_0"
]
},
{
"id": "1.0alpha7.train.913.coref2",
"entity_ids": [
"1.0alpha7.train.913.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.913.rel0s1.0alpha7.train.913.ent0_0.o1.0alpha7.train.913.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.913.ent0_0",
"arg2_id": "1.0alpha7.train.913.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.913.rel1s1.0alpha7.train.913.ent0_0.o1.0alpha7.train.913.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.913.ent0_0",
"arg2_id": "1.0alpha7.train.913.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.914 | 77487 | [
{
"id": "1.0alpha7.train.914.sent",
"type": "sentence",
"text": [
"Heparin can modulate laminin polymerization and the heparan sulfates of perlecan can bind to laminin, likely stabilizing the network (reviewed in Yurchenco and O'Rear, 1993)."
],
"offsets": [
[
0,
174
]
]
}
] | [
{
"id": "1.0alpha7.train.914.ent0_0",
"type": "chemical",
"text": [
"Heparin"
],
"offsets": [
[
0,
7
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "772"
}
]
},
{
"id": "1.0alpha7.train.914.ent1_0",
"type": "protein-family",
"text": [
"laminin"
],
"offsets": [
[
21,
28
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.914.ent2_1",
"type": "protein-family",
"text": [
"laminin"
],
"offsets": [
[
93,
100
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.914.ent3_0",
"type": "protein",
"text": [
"perlecan"
],
"offsets": [
[
72,
80
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3339"
},
{
"db_name": "hgnc",
"db_id": "HSPG2"
},
{
"db_name": "uniprot",
"db_id": "P98160"
}
]
},
{
"id": "1.0alpha7.train.914.ent4_0",
"type": "chemical",
"text": [
"heparan sulfates"
],
"offsets": [
[
52,
68
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "53477714"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.914.coref0",
"entity_ids": [
"1.0alpha7.train.914.ent0_0"
]
},
{
"id": "1.0alpha7.train.914.coref1",
"entity_ids": [
"1.0alpha7.train.914.ent1_0",
"1.0alpha7.train.914.ent2_1"
]
},
{
"id": "1.0alpha7.train.914.coref2",
"entity_ids": [
"1.0alpha7.train.914.ent3_0"
]
},
{
"id": "1.0alpha7.train.914.coref3",
"entity_ids": [
"1.0alpha7.train.914.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.914.rel0s1.0alpha7.train.914.ent1_0.o1.0alpha7.train.914.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.914.ent1_0",
"arg2_id": "1.0alpha7.train.914.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.914.rel0s1.0alpha7.train.914.ent2_1.o1.0alpha7.train.914.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.914.ent2_1",
"arg2_id": "1.0alpha7.train.914.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.914.rel1s1.0alpha7.train.914.ent1_0.o1.0alpha7.train.914.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.914.ent1_0",
"arg2_id": "1.0alpha7.train.914.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.914.rel1s1.0alpha7.train.914.ent2_1.o1.0alpha7.train.914.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.914.ent2_1",
"arg2_id": "1.0alpha7.train.914.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.915 | 12497201 | [
{
"id": "1.0alpha7.train.915.sent",
"type": "sentence",
"text": [
"Therefore, the binding of Sir2 and Sir3 at 70 bp, 0.5 kb, and 2.4 kb from the telomeric C1-3A repeats is dependent on the presence of the entire Sir complex."
],
"offsets": [
[
0,
163
]
]
}
] | [
{
"id": "1.0alpha7.train.915.ent0_0",
"type": "protein",
"text": [
"Sir2"
],
"offsets": [
[
27,
31
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P06700"
}
]
},
{
"id": "1.0alpha7.train.915.ent1_0",
"type": "protein",
"text": [
"Sir3"
],
"offsets": [
[
37,
41
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P06701"
}
]
},
{
"id": "1.0alpha7.train.915.ent2_0",
"type": "protein-complex",
"text": [
"Sir complex"
],
"offsets": [
[
151,
162
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.915.ent3_0",
"type": "DNA",
"text": [
"telomeric C1-3A repeats"
],
"offsets": [
[
83,
107
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.915.coref0",
"entity_ids": [
"1.0alpha7.train.915.ent0_0"
]
},
{
"id": "1.0alpha7.train.915.coref1",
"entity_ids": [
"1.0alpha7.train.915.ent1_0"
]
},
{
"id": "1.0alpha7.train.915.coref2",
"entity_ids": [
"1.0alpha7.train.915.ent2_0"
]
},
{
"id": "1.0alpha7.train.915.coref3",
"entity_ids": [
"1.0alpha7.train.915.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.915.rel0s1.0alpha7.train.915.ent0_0.o1.0alpha7.train.915.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.915.ent0_0",
"arg2_id": "1.0alpha7.train.915.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.915.rel1s1.0alpha7.train.915.ent1_0.o1.0alpha7.train.915.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.915.ent1_0",
"arg2_id": "1.0alpha7.train.915.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.916 | 3472845 | [
{
"id": "1.0alpha7.train.916.sent",
"type": "sentence",
"text": [
"Moreover, as shown in Fig. 2 B, when procaspase-9 was present, dATP binding to Apaf-1 was stimulated further."
],
"offsets": [
[
0,
113
]
]
}
] | [
{
"id": "1.0alpha7.train.916.ent0_0",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
83,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.916.ent1_0",
"type": "protein",
"text": [
"procaspase-9"
],
"offsets": [
[
39,
51
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "842"
},
{
"db_name": "hgnc",
"db_id": "CASP9"
},
{
"db_name": "uniprot",
"db_id": "P55211"
}
]
},
{
"id": "1.0alpha7.train.916.ent2_0",
"type": "chemical",
"text": [
"dATP"
],
"offsets": [
[
66,
70
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "15993"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.916.coref0",
"entity_ids": [
"1.0alpha7.train.916.ent0_0"
]
},
{
"id": "1.0alpha7.train.916.coref1",
"entity_ids": [
"1.0alpha7.train.916.ent1_0"
]
},
{
"id": "1.0alpha7.train.916.coref2",
"entity_ids": [
"1.0alpha7.train.916.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.916.rel0s1.0alpha7.train.916.ent0_0.o1.0alpha7.train.916.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.916.ent0_0",
"arg2_id": "1.0alpha7.train.916.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.917 | 15179566 | [
{
"id": "1.0alpha7.train.917.sent",
"type": "sentence",
"text": [
"NFATp and Sp1 bind overlapping TNF-alpha promoter sequences."
],
"offsets": [
[
0,
62
]
]
}
] | [
{
"id": "1.0alpha7.train.917.ent0_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
11,
14
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.917.ent1_0",
"type": "protein",
"text": [
"NFATp"
],
"offsets": [
[
0,
5
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4773"
},
{
"db_name": "hgnc",
"db_id": "NFATC2"
},
{
"db_name": "uniprot",
"db_id": "Q13469"
}
]
},
{
"id": "1.0alpha7.train.917.ent2_0",
"type": "DNA",
"text": [
"TNF-alpha promoter"
],
"offsets": [
[
33,
51
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.917.coref0",
"entity_ids": [
"1.0alpha7.train.917.ent0_0"
]
},
{
"id": "1.0alpha7.train.917.coref1",
"entity_ids": [
"1.0alpha7.train.917.ent1_0"
]
},
{
"id": "1.0alpha7.train.917.coref2",
"entity_ids": [
"1.0alpha7.train.917.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.917.rel0s1.0alpha7.train.917.ent1_0.o1.0alpha7.train.917.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.917.ent1_0",
"arg2_id": "1.0alpha7.train.917.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.917.rel1s1.0alpha7.train.917.ent0_0.o1.0alpha7.train.917.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.917.ent0_0",
"arg2_id": "1.0alpha7.train.917.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.918 | 9724459 | [
{
"id": "1.0alpha7.train.918.sent",
"type": "sentence",
"text": [
"Affinity analyses indicate that ZO-1 binds to occludin ( 15) and the Ras target AF-6 ( 47)."
],
"offsets": [
[
0,
96
]
]
}
] | [
{
"id": "1.0alpha7.train.918.ent0_0",
"type": "protein",
"text": [
"occludin"
],
"offsets": [
[
49,
57
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "100506658"
},
{
"db_name": "hgnc",
"db_id": "OCLN"
},
{
"db_name": "uniprot",
"db_id": "Q16625"
}
]
},
{
"id": "1.0alpha7.train.918.ent1_0",
"type": "protein-family",
"text": [
"Ras target"
],
"offsets": [
[
73,
83
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.918.ent2_0",
"type": "protein",
"text": [
"AF-6"
],
"offsets": [
[
84,
88
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4301"
},
{
"db_name": "hgnc",
"db_id": "AFDN"
},
{
"db_name": "uniprot",
"db_id": "P55196"
}
]
},
{
"id": "1.0alpha7.train.918.ent3_0",
"type": "protein",
"text": [
"ZO-1"
],
"offsets": [
[
34,
38
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7082"
},
{
"db_name": "hgnc",
"db_id": "TJP1"
},
{
"db_name": "uniprot",
"db_id": "Q07157"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.918.coref0",
"entity_ids": [
"1.0alpha7.train.918.ent0_0"
]
},
{
"id": "1.0alpha7.train.918.coref1",
"entity_ids": [
"1.0alpha7.train.918.ent1_0"
]
},
{
"id": "1.0alpha7.train.918.coref2",
"entity_ids": [
"1.0alpha7.train.918.ent2_0"
]
},
{
"id": "1.0alpha7.train.918.coref3",
"entity_ids": [
"1.0alpha7.train.918.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.918.rel0s1.0alpha7.train.918.ent0_0.o1.0alpha7.train.918.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.918.ent0_0",
"arg2_id": "1.0alpha7.train.918.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.918.rel1s1.0alpha7.train.918.ent2_0.o1.0alpha7.train.918.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.918.ent2_0",
"arg2_id": "1.0alpha7.train.918.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.919 | 25359760 | [
{
"id": "1.0alpha7.train.919.sent",
"type": "sentence",
"text": [
"DNedd4 binds to Comm through two of its three WW domains, which recognize either of two PY motifs (PPCY or LPSY) in the intracellular domain of Comm."
],
"offsets": [
[
0,
153
]
]
}
] | [
{
"id": "1.0alpha7.train.919.ent0_0",
"type": "protein-motif",
"text": [
"LPSY"
],
"offsets": [
[
110,
114
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.919.ent1_0",
"type": "protein-motif",
"text": [
"PPCY"
],
"offsets": [
[
102,
106
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.919.ent2_0",
"type": "protein-motif",
"text": [
"PY motifs"
],
"offsets": [
[
91,
100
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.919.ent3_0",
"type": "protein",
"text": [
"Comm"
],
"offsets": [
[
17,
21
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q24139"
}
]
},
{
"id": "1.0alpha7.train.919.ent4_1",
"type": "protein",
"text": [
"Comm"
],
"offsets": [
[
148,
152
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q24139"
}
]
},
{
"id": "1.0alpha7.train.919.ent5_0",
"type": "protein",
"text": [
"DNedd4"
],
"offsets": [
[
0,
6
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q9VVI3"
}
]
},
{
"id": "1.0alpha7.train.919.ent6_0",
"type": "protein-domain",
"text": [
"WW domains"
],
"offsets": [
[
48,
58
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.919.coref0",
"entity_ids": [
"1.0alpha7.train.919.ent0_0",
"1.0alpha7.train.919.ent1_0",
"1.0alpha7.train.919.ent2_0"
]
},
{
"id": "1.0alpha7.train.919.coref1",
"entity_ids": [
"1.0alpha7.train.919.ent3_0",
"1.0alpha7.train.919.ent4_1"
]
},
{
"id": "1.0alpha7.train.919.coref2",
"entity_ids": [
"1.0alpha7.train.919.ent5_0"
]
},
{
"id": "1.0alpha7.train.919.coref3",
"entity_ids": [
"1.0alpha7.train.919.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.919.rel0s1.0alpha7.train.919.ent3_0.o1.0alpha7.train.919.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.919.ent3_0",
"arg2_id": "1.0alpha7.train.919.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.919.rel0s1.0alpha7.train.919.ent4_1.o1.0alpha7.train.919.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.919.ent4_1",
"arg2_id": "1.0alpha7.train.919.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.920 | 11266951 | [
{
"id": "1.0alpha7.train.920.sent",
"type": "sentence",
"text": [
"Furthermore, it has been shown that GSK-3beta phosphorylates APC and that the phosphorylation enhances the binding of APC to beta-catenin (Rubinfeld et al., 1996 )."
],
"offsets": [
[
0,
170
]
]
}
] | [
{
"id": "1.0alpha7.train.920.ent0_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
63,
66
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.920.ent1_1",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
121,
124
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.920.ent2_0",
"type": "protein",
"text": [
"GSK-3beta"
],
"offsets": [
[
37,
46
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
},
{
"id": "1.0alpha7.train.920.ent3_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
129,
141
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.920.coref0",
"entity_ids": [
"1.0alpha7.train.920.ent0_0",
"1.0alpha7.train.920.ent1_1"
]
},
{
"id": "1.0alpha7.train.920.coref1",
"entity_ids": [
"1.0alpha7.train.920.ent2_0"
]
},
{
"id": "1.0alpha7.train.920.coref2",
"entity_ids": [
"1.0alpha7.train.920.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.920.rel0s1.0alpha7.train.920.ent0_0.o1.0alpha7.train.920.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.920.ent0_0",
"arg2_id": "1.0alpha7.train.920.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.920.rel0s1.0alpha7.train.920.ent1_1.o1.0alpha7.train.920.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.920.ent1_1",
"arg2_id": "1.0alpha7.train.920.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.920.rel1s1.0alpha7.train.920.ent0_0.o1.0alpha7.train.920.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.920.ent0_0",
"arg2_id": "1.0alpha7.train.920.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.920.rel1s1.0alpha7.train.920.ent1_1.o1.0alpha7.train.920.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.920.ent1_1",
"arg2_id": "1.0alpha7.train.920.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.921 | 18099345 | [
{
"id": "1.0alpha7.train.921.sent",
"type": "sentence",
"text": [
"Smad3 Binds the p300 C-Terminal Fragment"
],
"offsets": [
[
0,
40
]
]
}
] | [
{
"id": "1.0alpha7.train.921.ent0_0",
"type": "protein",
"text": [
"p300"
],
"offsets": [
[
16,
20
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2033"
},
{
"db_name": "hgnc",
"db_id": "EP300"
},
{
"db_name": "uniprot",
"db_id": "Q09472"
}
]
},
{
"id": "1.0alpha7.train.921.ent1_0",
"type": "protein",
"text": [
"Smad3"
],
"offsets": [
[
0,
5
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4088"
},
{
"db_name": "hgnc",
"db_id": "SMAD3"
},
{
"db_name": "uniprot",
"db_id": "P84022"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.921.coref0",
"entity_ids": [
"1.0alpha7.train.921.ent0_0"
]
},
{
"id": "1.0alpha7.train.921.coref1",
"entity_ids": [
"1.0alpha7.train.921.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.921.rel0s1.0alpha7.train.921.ent0_0.o1.0alpha7.train.921.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.921.ent0_0",
"arg2_id": "1.0alpha7.train.921.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.922 | 4281876 | [
{
"id": "1.0alpha7.train.922.sent",
"type": "sentence",
"text": [
"As a control, competition with unlabeled oligonucleotide markedly diminished the binding of both Smad3 and Sp1 to the biotinylated oligonucleotide (Fig. 2 D)."
],
"offsets": [
[
0,
161
]
]
}
] | [
{
"id": "1.0alpha7.train.922.ent0_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
109,
112
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.922.ent1_0",
"type": "reagent",
"text": [
"unlabeled oligonucleotide"
],
"offsets": [
[
31,
56
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.922.ent2_0",
"type": "reagent",
"text": [
"biotinylated oligonucleotide"
],
"offsets": [
[
120,
148
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.922.ent3_0",
"type": "protein",
"text": [
"Smad3"
],
"offsets": [
[
98,
103
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4088"
},
{
"db_name": "hgnc",
"db_id": "SMAD3"
},
{
"db_name": "uniprot",
"db_id": "P84022"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.922.coref0",
"entity_ids": [
"1.0alpha7.train.922.ent0_0"
]
},
{
"id": "1.0alpha7.train.922.coref1",
"entity_ids": [
"1.0alpha7.train.922.ent1_0"
]
},
{
"id": "1.0alpha7.train.922.coref2",
"entity_ids": [
"1.0alpha7.train.922.ent2_0"
]
},
{
"id": "1.0alpha7.train.922.coref3",
"entity_ids": [
"1.0alpha7.train.922.ent3_0"
]
}
] | [] |
1.0alpha7.train.923 | 21966818 | [
{
"id": "1.0alpha7.train.923.sent",
"type": "sentence",
"text": [
"In the water-mediated S1 binding mode of APC-10950, the ether oxygen does not make hydrogen bonds ( Fig. 6b), whereas in the direct amidine-Asp189 hydrogen-bonded mode of APC-11092, this oxygen receives a hydrogen bond from N 2His57 ( Fig. 6a)."
],
"offsets": [
[
0,
249
]
]
}
] | [
{
"id": "1.0alpha7.train.923.ent0_0",
"type": "amino-acid",
"text": [
"N 2His57"
],
"offsets": [
[
228,
236
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.923.ent1_0",
"type": "protein-region",
"text": [
"S1"
],
"offsets": [
[
23,
25
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.923.ent2_0",
"type": "chemical",
"text": [
"APC-10950"
],
"offsets": [
[
43,
52
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.923.ent3_0",
"type": "amino-acid",
"text": [
"amidine-Asp189"
],
"offsets": [
[
135,
149
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.923.ent4_0",
"type": "chemical",
"text": [
"APC-11092"
],
"offsets": [
[
175,
184
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.923.coref0",
"entity_ids": [
"1.0alpha7.train.923.ent0_0"
]
},
{
"id": "1.0alpha7.train.923.coref1",
"entity_ids": [
"1.0alpha7.train.923.ent1_0"
]
},
{
"id": "1.0alpha7.train.923.coref2",
"entity_ids": [
"1.0alpha7.train.923.ent2_0"
]
},
{
"id": "1.0alpha7.train.923.coref3",
"entity_ids": [
"1.0alpha7.train.923.ent3_0"
]
},
{
"id": "1.0alpha7.train.923.coref4",
"entity_ids": [
"1.0alpha7.train.923.ent4_0"
]
}
] | [] |
1.0alpha7.train.924 | 6906292 | [
{
"id": "1.0alpha7.train.924.sent",
"type": "sentence",
"text": [
"These include interactions involving the RS domains of specific SR family proteins, such as ASF/ SF2, which binds to purine-rich ESEs, and of U2AF-35kDa, which binds to the polypyrimidine tract through U2AF-65kDa ( 37)."
],
"offsets": [
[
0,
225
]
]
}
] | [
{
"id": "1.0alpha7.train.924.ent0_0",
"type": "protein-domain",
"text": [
"RS domains"
],
"offsets": [
[
42,
52
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent1_0",
"type": "protein-complex",
"text": [
"U2AF"
],
"offsets": [
[
147,
151
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent2_1",
"type": "protein-complex",
"text": [
"U2AF"
],
"offsets": [
[
208,
212
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent3_0",
"type": "protein",
"text": [
"U2AF-35kDa"
],
"offsets": [
[
147,
157
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent4_0",
"type": "protein",
"text": [
"ASF/ SF2"
],
"offsets": [
[
95,
103
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6426"
},
{
"db_name": "hgnc",
"db_id": "SRSF1"
},
{
"db_name": "uniprot",
"db_id": "Q07955"
}
]
},
{
"id": "1.0alpha7.train.924.ent5_0",
"type": "protein",
"text": [
"U2AF-65kDa"
],
"offsets": [
[
208,
218
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent6_0",
"type": "DNA",
"text": [
"purine-rich ESEs"
],
"offsets": [
[
121,
137
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent7_0",
"type": "protein-family",
"text": [
"SR family proteins"
],
"offsets": [
[
66,
84
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.924.ent8_0",
"type": "DNA",
"text": [
"polypyrimidine tract"
],
"offsets": [
[
178,
198
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.924.coref0",
"entity_ids": [
"1.0alpha7.train.924.ent0_0"
]
},
{
"id": "1.0alpha7.train.924.coref1",
"entity_ids": [
"1.0alpha7.train.924.ent1_0",
"1.0alpha7.train.924.ent2_1"
]
},
{
"id": "1.0alpha7.train.924.coref2",
"entity_ids": [
"1.0alpha7.train.924.ent3_0"
]
},
{
"id": "1.0alpha7.train.924.coref3",
"entity_ids": [
"1.0alpha7.train.924.ent4_0"
]
},
{
"id": "1.0alpha7.train.924.coref4",
"entity_ids": [
"1.0alpha7.train.924.ent5_0"
]
},
{
"id": "1.0alpha7.train.924.coref5",
"entity_ids": [
"1.0alpha7.train.924.ent6_0"
]
},
{
"id": "1.0alpha7.train.924.coref6",
"entity_ids": [
"1.0alpha7.train.924.ent7_0"
]
},
{
"id": "1.0alpha7.train.924.coref7",
"entity_ids": [
"1.0alpha7.train.924.ent8_0"
]
}
] | [
{
"id": "1.0alpha7.train.924.rel0s1.0alpha7.train.924.ent4_0.o1.0alpha7.train.924.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.924.ent4_0",
"arg2_id": "1.0alpha7.train.924.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.924.rel1s1.0alpha7.train.924.ent3_0.o1.0alpha7.train.924.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.924.ent3_0",
"arg2_id": "1.0alpha7.train.924.ent8_0",
"normalized": []
}
] |
1.0alpha7.train.925 | 15691010 | [
{
"id": "1.0alpha7.train.925.sent",
"type": "sentence",
"text": [
"This idea arose from the finding that DREF binds to the DRE sequence as a homodimer of the 80-kDa polypeptide."
],
"offsets": [
[
0,
112
]
]
}
] | [
{
"id": "1.0alpha7.train.925.ent0_0",
"type": "DNA",
"text": [
"DRE sequence"
],
"offsets": [
[
58,
70
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.925.ent1_0",
"type": "protein",
"text": [
"DREF"
],
"offsets": [
[
39,
43
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9189"
},
{
"db_name": "hgnc",
"db_id": "ZBED1"
},
{
"db_name": "uniprot",
"db_id": "O96006"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.925.coref0",
"entity_ids": [
"1.0alpha7.train.925.ent0_0"
]
},
{
"id": "1.0alpha7.train.925.coref1",
"entity_ids": [
"1.0alpha7.train.925.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.925.rel0s1.0alpha7.train.925.ent0_0.o1.0alpha7.train.925.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.925.ent0_0",
"arg2_id": "1.0alpha7.train.925.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.926 | 3950112 | [
{
"id": "1.0alpha7.train.926.sent",
"type": "sentence",
"text": [
"Immunodetection revealed that immobilized PTN binds the ALK ECD (Fig. 1 b)."
],
"offsets": [
[
0,
78
]
]
}
] | [
{
"id": "1.0alpha7.train.926.ent0_0",
"type": "protein",
"text": [
"PTN"
],
"offsets": [
[
43,
46
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5764"
},
{
"db_name": "hgnc",
"db_id": "PTN"
},
{
"db_name": "uniprot",
"db_id": "P21246"
}
]
},
{
"id": "1.0alpha7.train.926.ent1_0",
"type": "protein-domain",
"text": [
"ALK ECD"
],
"offsets": [
[
58,
65
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.926.ent2_0",
"type": "protein",
"text": [
"ALK"
],
"offsets": [
[
58,
61
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "238"
},
{
"db_name": "hgnc",
"db_id": "ALK"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.926.coref0",
"entity_ids": [
"1.0alpha7.train.926.ent0_0"
]
},
{
"id": "1.0alpha7.train.926.coref1",
"entity_ids": [
"1.0alpha7.train.926.ent1_0"
]
},
{
"id": "1.0alpha7.train.926.coref2",
"entity_ids": [
"1.0alpha7.train.926.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.926.rel0s1.0alpha7.train.926.ent0_0.o1.0alpha7.train.926.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.926.ent0_0",
"arg2_id": "1.0alpha7.train.926.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.926.rel1s1.0alpha7.train.926.ent0_0.o1.0alpha7.train.926.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.926.ent0_0",
"arg2_id": "1.0alpha7.train.926.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.927 | 1854433 | [
{
"id": "1.0alpha7.train.927.sent",
"type": "sentence",
"text": [
"Panel B, binding of the nuclear proteins to Sp1 oligonucleotides."
],
"offsets": [
[
0,
67
]
]
}
] | [
{
"id": "1.0alpha7.train.927.ent0_0",
"type": "DNA",
"text": [
"Sp1 oligonucleotides"
],
"offsets": [
[
46,
66
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.927.ent1_0",
"type": "protein-family",
"text": [
"nuclear proteins"
],
"offsets": [
[
25,
41
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.927.coref0",
"entity_ids": [
"1.0alpha7.train.927.ent0_0"
]
},
{
"id": "1.0alpha7.train.927.coref1",
"entity_ids": [
"1.0alpha7.train.927.ent1_0"
]
}
] | [] |
1.0alpha7.train.928 | 15275396 | [
{
"id": "1.0alpha7.train.928.sent",
"type": "sentence",
"text": [
"Where might Phyl bind to the Ttk POZ domain with such specificity?"
],
"offsets": [
[
0,
68
]
]
}
] | [
{
"id": "1.0alpha7.train.928.ent0_0",
"type": "protein-domain",
"text": [
"POZ domain"
],
"offsets": [
[
35,
45
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.928.ent1_0",
"type": "protein",
"text": [
"Ttk"
],
"offsets": [
[
31,
34
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7272"
},
{
"db_name": "hgnc",
"db_id": "TTK"
},
{
"db_name": "uniprot",
"db_id": "P33981"
}
]
},
{
"id": "1.0alpha7.train.928.ent2_0",
"type": "protein",
"text": [
"Phyl"
],
"offsets": [
[
13,
17
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q27934"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.928.coref0",
"entity_ids": [
"1.0alpha7.train.928.ent0_0"
]
},
{
"id": "1.0alpha7.train.928.coref1",
"entity_ids": [
"1.0alpha7.train.928.ent1_0"
]
},
{
"id": "1.0alpha7.train.928.coref2",
"entity_ids": [
"1.0alpha7.train.928.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.928.rel0s1.0alpha7.train.928.ent1_0.o1.0alpha7.train.928.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.928.ent1_0",
"arg2_id": "1.0alpha7.train.928.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.928.rel1s1.0alpha7.train.928.ent0_0.o1.0alpha7.train.928.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.928.ent0_0",
"arg2_id": "1.0alpha7.train.928.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.929 | 1464861 | [
{
"id": "1.0alpha7.train.929.sent",
"type": "sentence",
"text": [
"Therefore, the amount of nuclear proteins binding to the Sp1 oligonucleotide was about 2-fold higher in nuclear extracts isolated from chondrocytes dedifferentiated into fibroblast-like cells as compared with that of nuclear extracts isolated from chondrocytes."
],
"offsets": [
[
0,
261
]
]
}
] | [
{
"id": "1.0alpha7.train.929.ent0_0",
"type": "protein-family",
"text": [
"nuclear proteins"
],
"offsets": [
[
25,
41
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.929.ent1_0",
"type": "DNA",
"text": [
"Sp1 oligonucleotide"
],
"offsets": [
[
57,
76
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.929.coref0",
"entity_ids": [
"1.0alpha7.train.929.ent0_0"
]
},
{
"id": "1.0alpha7.train.929.coref1",
"entity_ids": [
"1.0alpha7.train.929.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.929.rel0s1.0alpha7.train.929.ent0_0.o1.0alpha7.train.929.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.929.ent0_0",
"arg2_id": "1.0alpha7.train.929.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.930 | 11971885 | [
{
"id": "1.0alpha7.train.930.sent",
"type": "sentence",
"text": [
"However, in a pho 1 /pho 1 mutant background, PHO no longer binds to the six PHO binding sites in the PRE and repression is lost, resulting in LacZ expression ( Fritsch et al., 1999)."
],
"offsets": [
[
0,
191
]
]
}
] | [
{
"id": "1.0alpha7.train.930.ent0_0",
"type": "DNA",
"text": [
"PRE"
],
"offsets": [
[
108,
111
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.930.ent1_0",
"type": "DNA",
"text": [
"PHO binding sites"
],
"offsets": [
[
81,
98
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.930.ent2_0",
"type": "gene",
"text": [
"LacZ"
],
"offsets": [
[
150,
154
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.930.ent3_0",
"type": "protein",
"text": [
"PHO"
],
"offsets": [
[
49,
52
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.930.ent4_1",
"type": "protein",
"text": [
"PHO"
],
"offsets": [
[
81,
84
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.930.ent5_0",
"type": "cell",
"text": [
"pho 1 /pho 1 mutant"
],
"offsets": [
[
16,
35
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.930.coref0",
"entity_ids": [
"1.0alpha7.train.930.ent0_0"
]
},
{
"id": "1.0alpha7.train.930.coref1",
"entity_ids": [
"1.0alpha7.train.930.ent1_0"
]
},
{
"id": "1.0alpha7.train.930.coref2",
"entity_ids": [
"1.0alpha7.train.930.ent2_0"
]
},
{
"id": "1.0alpha7.train.930.coref3",
"entity_ids": [
"1.0alpha7.train.930.ent3_0",
"1.0alpha7.train.930.ent4_1"
]
},
{
"id": "1.0alpha7.train.930.coref4",
"entity_ids": [
"1.0alpha7.train.930.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.930.rel0s1.0alpha7.train.930.ent0_0.o1.0alpha7.train.930.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.930.ent0_0",
"arg2_id": "1.0alpha7.train.930.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.930.rel0s1.0alpha7.train.930.ent0_0.o1.0alpha7.train.930.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.930.ent0_0",
"arg2_id": "1.0alpha7.train.930.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.931 | 2821997 | [
{
"id": "1.0alpha7.train.931.sent",
"type": "sentence",
"text": [
"The binding of p300/CBP by E1A stimulates quiescent primary cardiac myocytes to undergo DNA synthesis ( 5, 6)."
],
"offsets": [
[
0,
113
]
]
}
] | [
{
"id": "1.0alpha7.train.931.ent0_0",
"type": "protein",
"text": [
"E1A"
],
"offsets": [
[
29,
32
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P03255"
}
]
},
{
"id": "1.0alpha7.train.931.ent1_0",
"type": "protein",
"text": [
"CBP"
],
"offsets": [
[
21,
24
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1387"
},
{
"db_name": "hgnc",
"db_id": "CREBBP"
},
{
"db_name": "uniprot",
"db_id": "Q92793"
}
]
},
{
"id": "1.0alpha7.train.931.ent2_0",
"type": "protein-family",
"text": [
"p300/CBP"
],
"offsets": [
[
16,
24
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR038547"
}
]
},
{
"id": "1.0alpha7.train.931.ent3_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
90,
93
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.931.ent4_0",
"type": "protein",
"text": [
"p300"
],
"offsets": [
[
16,
20
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2033"
},
{
"db_name": "hgnc",
"db_id": "EP300"
},
{
"db_name": "uniprot",
"db_id": "Q09472"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.931.coref0",
"entity_ids": [
"1.0alpha7.train.931.ent0_0"
]
},
{
"id": "1.0alpha7.train.931.coref1",
"entity_ids": [
"1.0alpha7.train.931.ent1_0"
]
},
{
"id": "1.0alpha7.train.931.coref2",
"entity_ids": [
"1.0alpha7.train.931.ent2_0"
]
},
{
"id": "1.0alpha7.train.931.coref3",
"entity_ids": [
"1.0alpha7.train.931.ent3_0"
]
},
{
"id": "1.0alpha7.train.931.coref4",
"entity_ids": [
"1.0alpha7.train.931.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.931.rel0s1.0alpha7.train.931.ent0_0.o1.0alpha7.train.931.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.931.ent0_0",
"arg2_id": "1.0alpha7.train.931.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.932 | 15990064 | [
{
"id": "1.0alpha7.train.932.sent",
"type": "sentence",
"text": [
"In contrast, mutations M3 and M4 had minimal effects on Elk-1 binding and phosphorylation by ERK2 (Fig. 7B, lanes 4 and 5; Fig. 7C, lanes 5 and 6)."
],
"offsets": [
[
0,
154
]
]
}
] | [
{
"id": "1.0alpha7.train.932.ent0_0",
"type": "mutation",
"text": [
"M4"
],
"offsets": [
[
32,
34
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.932.ent1_0",
"type": "protein",
"text": [
"ERK2"
],
"offsets": [
[
97,
101
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5594"
},
{
"db_name": "hgnc",
"db_id": "MAPK1"
},
{
"db_name": "uniprot",
"db_id": "P28482"
}
]
},
{
"id": "1.0alpha7.train.932.ent2_0",
"type": "protein",
"text": [
"Elk-1"
],
"offsets": [
[
59,
64
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2002"
},
{
"db_name": "hgnc",
"db_id": "ELK1"
},
{
"db_name": "uniprot",
"db_id": "P19419"
}
]
},
{
"id": "1.0alpha7.train.932.ent3_0",
"type": "mutation",
"text": [
"M3"
],
"offsets": [
[
24,
26
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.932.coref0",
"entity_ids": [
"1.0alpha7.train.932.ent0_0"
]
},
{
"id": "1.0alpha7.train.932.coref1",
"entity_ids": [
"1.0alpha7.train.932.ent1_0"
]
},
{
"id": "1.0alpha7.train.932.coref2",
"entity_ids": [
"1.0alpha7.train.932.ent2_0"
]
},
{
"id": "1.0alpha7.train.932.coref3",
"entity_ids": [
"1.0alpha7.train.932.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.932.rel0s1.0alpha7.train.932.ent1_0.o1.0alpha7.train.932.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.932.ent1_0",
"arg2_id": "1.0alpha7.train.932.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.933 | 1992074 | [
{
"id": "1.0alpha7.train.933.sent",
"type": "sentence",
"text": [
"Second, Bcl-xS binds to Bcl-xL but not Bax in yeast ( 24, 25, 27)."
],
"offsets": [
[
0,
72
]
]
}
] | [
{
"id": "1.0alpha7.train.933.ent0_0",
"type": "protein",
"text": [
"Bcl-xS"
],
"offsets": [
[
9,
15
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "598"
},
{
"db_name": "hgnc",
"db_id": "BCL2L1"
},
{
"db_name": "uniprot",
"db_id": "Q07817"
}
]
},
{
"id": "1.0alpha7.train.933.ent1_0",
"type": "protein",
"text": [
"Bax"
],
"offsets": [
[
42,
45
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "581"
},
{
"db_name": "hgnc",
"db_id": "BAX"
},
{
"db_name": "uniprot",
"db_id": "I6LPK7"
}
]
},
{
"id": "1.0alpha7.train.933.ent2_0",
"type": "protein",
"text": [
"Bcl-xL"
],
"offsets": [
[
26,
32
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "598"
},
{
"db_name": "hgnc",
"db_id": "BCL2L1"
},
{
"db_name": "uniprot",
"db_id": "Q07817"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.933.coref0",
"entity_ids": [
"1.0alpha7.train.933.ent0_0"
]
},
{
"id": "1.0alpha7.train.933.coref1",
"entity_ids": [
"1.0alpha7.train.933.ent1_0"
]
},
{
"id": "1.0alpha7.train.933.coref2",
"entity_ids": [
"1.0alpha7.train.933.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.933.rel0s1.0alpha7.train.933.ent0_0.o1.0alpha7.train.933.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.933.ent0_0",
"arg2_id": "1.0alpha7.train.933.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.933.rel1s1.0alpha7.train.933.ent0_0.o1.0alpha7.train.933.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.933.ent0_0",
"arg2_id": "1.0alpha7.train.933.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.934 | 6656104 | [
{
"id": "1.0alpha7.train.934.sent",
"type": "sentence",
"text": [
"ATP Binds Mainly to the CI Domain."
],
"offsets": [
[
0,
35
]
]
}
] | [
{
"id": "1.0alpha7.train.934.ent0_0",
"type": "protein-domain",
"text": [
"CI Domain"
],
"offsets": [
[
25,
34
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.934.ent1_0",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
0,
3
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.934.coref0",
"entity_ids": [
"1.0alpha7.train.934.ent0_0"
]
},
{
"id": "1.0alpha7.train.934.coref1",
"entity_ids": [
"1.0alpha7.train.934.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.934.rel0s1.0alpha7.train.934.ent0_0.o1.0alpha7.train.934.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.934.ent0_0",
"arg2_id": "1.0alpha7.train.934.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.935 | 11949492 | [
{
"id": "1.0alpha7.train.935.sent",
"type": "sentence",
"text": [
"Binding of Dfd and Dfd-VP16 to the 2 ϫ D site (see Figure 4 for sequence) in EMSAs."
],
"offsets": [
[
0,
83
]
]
}
] | [
{
"id": "1.0alpha7.train.935.ent0_0",
"type": "DNA",
"text": [
"2 ϫ D site"
],
"offsets": [
[
35,
45
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.935.ent1_0",
"type": "protein",
"text": [
"Dfd"
],
"offsets": [
[
11,
14
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P07548"
}
]
},
{
"id": "1.0alpha7.train.935.ent2_1",
"type": "protein",
"text": [
"Dfd"
],
"offsets": [
[
19,
22
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P07548"
}
]
},
{
"id": "1.0alpha7.train.935.ent3_0",
"type": "fusion-protein",
"text": [
"Dfd-VP16"
],
"offsets": [
[
19,
27
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.935.ent4_0",
"type": "assay",
"text": [
"EMSAs"
],
"offsets": [
[
77,
82
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.935.coref0",
"entity_ids": [
"1.0alpha7.train.935.ent0_0"
]
},
{
"id": "1.0alpha7.train.935.coref1",
"entity_ids": [
"1.0alpha7.train.935.ent1_0",
"1.0alpha7.train.935.ent2_1"
]
},
{
"id": "1.0alpha7.train.935.coref2",
"entity_ids": [
"1.0alpha7.train.935.ent3_0"
]
},
{
"id": "1.0alpha7.train.935.coref3",
"entity_ids": [
"1.0alpha7.train.935.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.935.rel0s1.0alpha7.train.935.ent0_0.o1.0alpha7.train.935.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.935.ent0_0",
"arg2_id": "1.0alpha7.train.935.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.935.rel0s1.0alpha7.train.935.ent0_0.o1.0alpha7.train.935.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.935.ent0_0",
"arg2_id": "1.0alpha7.train.935.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.935.rel1s1.0alpha7.train.935.ent0_0.o1.0alpha7.train.935.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.935.ent0_0",
"arg2_id": "1.0alpha7.train.935.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.936 | 15213592 | [
{
"id": "1.0alpha7.train.936.sent",
"type": "sentence",
"text": [
"PU.1 binds to the CH3 domain of CBP ( 82) (Fig. 5D)."
],
"offsets": [
[
0,
55
]
]
}
] | [
{
"id": "1.0alpha7.train.936.ent0_0",
"type": "protein",
"text": [
"CBP"
],
"offsets": [
[
34,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1387"
},
{
"db_name": "hgnc",
"db_id": "CREBBP"
},
{
"db_name": "uniprot",
"db_id": "Q92793"
}
]
},
{
"id": "1.0alpha7.train.936.ent1_0",
"type": "protein-domain",
"text": [
"CH3 domain"
],
"offsets": [
[
19,
29
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.936.ent2_0",
"type": "protein",
"text": [
"PU.1"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6688"
},
{
"db_name": "hgnc",
"db_id": "SPI1"
},
{
"db_name": "uniprot",
"db_id": "P17947"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.936.coref0",
"entity_ids": [
"1.0alpha7.train.936.ent0_0"
]
},
{
"id": "1.0alpha7.train.936.coref1",
"entity_ids": [
"1.0alpha7.train.936.ent1_0"
]
},
{
"id": "1.0alpha7.train.936.coref2",
"entity_ids": [
"1.0alpha7.train.936.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.936.rel0s1.0alpha7.train.936.ent1_0.o1.0alpha7.train.936.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.936.ent1_0",
"arg2_id": "1.0alpha7.train.936.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.936.rel1s1.0alpha7.train.936.ent0_0.o1.0alpha7.train.936.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.936.ent0_0",
"arg2_id": "1.0alpha7.train.936.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.937 | 9413816 | [
{
"id": "1.0alpha7.train.937.sent",
"type": "sentence",
"text": [
"The activated GTP-bound form of Cdc42 interacts with several proteins that are presumed to be effectors that transduce its signal to bring about polarization of the actin cytoskeleton (Cvrcková et al., 1995; Brown et al., 1997; Chen et al., 1997; Evangelista et al., 1997; Bi et al., 2000)."
],
"offsets": [
[
0,
290
]
]
}
] | [
{
"id": "1.0alpha7.train.937.ent0_0",
"type": "protein",
"text": [
"GTP-bound form of Cdc42"
],
"offsets": [
[
14,
37
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.937.ent1_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
14,
17
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.937.ent2_0",
"type": "organelle",
"text": [
"actin cytoskeleton"
],
"offsets": [
[
165,
183
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.937.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
165,
170
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.937.ent4_0",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
32,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.937.coref0",
"entity_ids": [
"1.0alpha7.train.937.ent0_0"
]
},
{
"id": "1.0alpha7.train.937.coref1",
"entity_ids": [
"1.0alpha7.train.937.ent1_0"
]
},
{
"id": "1.0alpha7.train.937.coref2",
"entity_ids": [
"1.0alpha7.train.937.ent2_0"
]
},
{
"id": "1.0alpha7.train.937.coref3",
"entity_ids": [
"1.0alpha7.train.937.ent3_0"
]
},
{
"id": "1.0alpha7.train.937.coref4",
"entity_ids": [
"1.0alpha7.train.937.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.937.rel0s1.0alpha7.train.937.ent1_0.o1.0alpha7.train.937.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.937.ent1_0",
"arg2_id": "1.0alpha7.train.937.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.938 | 419582 | [
{
"id": "1.0alpha7.train.938.sent",
"type": "sentence",
"text": [
"A truncated p65-beta construct, GST-p65-beta-delta3, continued to show strong Cdc42 binding, although binding to Rac was reduced ( Fig. 1)."
],
"offsets": [
[
0,
144
]
]
}
] | [
{
"id": "1.0alpha7.train.938.ent0_0",
"type": "experimental-construct",
"text": [
"GST-p65-beta-delta3"
],
"offsets": [
[
34,
53
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.938.ent1_0",
"type": "experimental-construct",
"text": [
"p65-beta construct"
],
"offsets": [
[
14,
32
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.938.ent2_0",
"type": "protein",
"text": [
"p65"
],
"offsets": [
[
14,
17
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.938.ent3_1",
"type": "protein",
"text": [
"p65"
],
"offsets": [
[
38,
41
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.938.ent4_0",
"type": "protein-family",
"text": [
"Rac"
],
"offsets": [
[
118,
121
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039027"
}
]
},
{
"id": "1.0alpha7.train.938.ent5_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
34,
37
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.938.ent6_0",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
81,
86
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.938.coref0",
"entity_ids": [
"1.0alpha7.train.938.ent0_0",
"1.0alpha7.train.938.ent1_0"
]
},
{
"id": "1.0alpha7.train.938.coref1",
"entity_ids": [
"1.0alpha7.train.938.ent2_0",
"1.0alpha7.train.938.ent3_1"
]
},
{
"id": "1.0alpha7.train.938.coref2",
"entity_ids": [
"1.0alpha7.train.938.ent4_0"
]
},
{
"id": "1.0alpha7.train.938.coref3",
"entity_ids": [
"1.0alpha7.train.938.ent5_0"
]
},
{
"id": "1.0alpha7.train.938.coref4",
"entity_ids": [
"1.0alpha7.train.938.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.938.rel0s1.0alpha7.train.938.ent0_0.o1.0alpha7.train.938.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.938.ent0_0",
"arg2_id": "1.0alpha7.train.938.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.938.rel0s1.0alpha7.train.938.ent1_0.o1.0alpha7.train.938.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.938.ent1_0",
"arg2_id": "1.0alpha7.train.938.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.938.rel1s1.0alpha7.train.938.ent0_0.o1.0alpha7.train.938.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.938.ent0_0",
"arg2_id": "1.0alpha7.train.938.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.938.rel1s1.0alpha7.train.938.ent1_0.o1.0alpha7.train.938.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.938.ent1_0",
"arg2_id": "1.0alpha7.train.938.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.939 | 24680584 | [
{
"id": "1.0alpha7.train.939.sent",
"type": "sentence",
"text": [
"Evidently, the peptide only slightly affected binding of c-Cbl to EGFR, but it almost completely abolished the interaction with the shorter viral form of Cbl."
],
"offsets": [
[
0,
160
]
]
}
] | [
{
"id": "1.0alpha7.train.939.ent0_0",
"type": "protein",
"text": [
"EGFR"
],
"offsets": [
[
68,
72
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1956"
},
{
"db_name": "hgnc",
"db_id": "EGFR"
},
{
"db_name": "uniprot",
"db_id": "P00533"
}
]
},
{
"id": "1.0alpha7.train.939.ent1_0",
"type": "protein",
"text": [
"c-Cbl"
],
"offsets": [
[
58,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "867"
},
{
"db_name": "hgnc",
"db_id": "CBL"
},
{
"db_name": "uniprot",
"db_id": "P22681"
}
]
},
{
"id": "1.0alpha7.train.939.ent2_0",
"type": "protein",
"text": [
"viral form of Cbl"
],
"offsets": [
[
142,
159
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.939.coref0",
"entity_ids": [
"1.0alpha7.train.939.ent0_0"
]
},
{
"id": "1.0alpha7.train.939.coref1",
"entity_ids": [
"1.0alpha7.train.939.ent1_0"
]
},
{
"id": "1.0alpha7.train.939.coref2",
"entity_ids": [
"1.0alpha7.train.939.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.939.rel0s1.0alpha7.train.939.ent0_0.o1.0alpha7.train.939.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.939.ent0_0",
"arg2_id": "1.0alpha7.train.939.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.939.rel1s1.0alpha7.train.939.ent0_0.o1.0alpha7.train.939.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.939.ent0_0",
"arg2_id": "1.0alpha7.train.939.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.940 | 11663600 | [
{
"id": "1.0alpha7.train.940.sent",
"type": "sentence",
"text": [
"The notable absence of a prominent new HBP1 binding species further supports the model that HBP1 DNA binding is not necessary for the transcriptional repression and inhibition of TCF DNA binding through these specific LEF/ TCF DNA elements."
],
"offsets": [
[
0,
244
]
]
}
] | [
{
"id": "1.0alpha7.train.940.ent0_0",
"type": "protein-family",
"text": [
"TCF"
],
"offsets": [
[
182,
185
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.940.ent1_1",
"type": "protein-family",
"text": [
"TCF"
],
"offsets": [
[
227,
230
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.940.ent2_0",
"type": "protein-family",
"text": [
"LEF/ TCF"
],
"offsets": [
[
222,
230
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.940.ent3_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
99,
102
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.940.ent4_1",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
186,
189
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.940.ent5_2",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
231,
234
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.940.ent6_0",
"type": "DNA",
"text": [
"LEF/ TCF DNA elements"
],
"offsets": [
[
222,
243
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.940.ent7_0",
"type": "protein",
"text": [
"HBP1"
],
"offsets": [
[
40,
44
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "26959"
},
{
"db_name": "hgnc",
"db_id": "HBP1"
},
{
"db_name": "uniprot",
"db_id": "C9JPK6"
}
]
},
{
"id": "1.0alpha7.train.940.ent8_1",
"type": "protein",
"text": [
"HBP1"
],
"offsets": [
[
94,
98
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "26959"
},
{
"db_name": "hgnc",
"db_id": "HBP1"
},
{
"db_name": "uniprot",
"db_id": "C9JPK6"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.940.coref0",
"entity_ids": [
"1.0alpha7.train.940.ent0_0",
"1.0alpha7.train.940.ent1_1",
"1.0alpha7.train.940.ent2_0"
]
},
{
"id": "1.0alpha7.train.940.coref1",
"entity_ids": [
"1.0alpha7.train.940.ent3_0",
"1.0alpha7.train.940.ent4_1",
"1.0alpha7.train.940.ent5_2"
]
},
{
"id": "1.0alpha7.train.940.coref2",
"entity_ids": [
"1.0alpha7.train.940.ent6_0"
]
},
{
"id": "1.0alpha7.train.940.coref3",
"entity_ids": [
"1.0alpha7.train.940.ent7_0",
"1.0alpha7.train.940.ent8_1"
]
}
] | [
{
"id": "1.0alpha7.train.940.rel0s1.0alpha7.train.940.ent3_0.o1.0alpha7.train.940.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent3_0",
"arg2_id": "1.0alpha7.train.940.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel0s1.0alpha7.train.940.ent3_0.o1.0alpha7.train.940.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent3_0",
"arg2_id": "1.0alpha7.train.940.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel0s1.0alpha7.train.940.ent4_1.o1.0alpha7.train.940.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent4_1",
"arg2_id": "1.0alpha7.train.940.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel0s1.0alpha7.train.940.ent4_1.o1.0alpha7.train.940.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent4_1",
"arg2_id": "1.0alpha7.train.940.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel0s1.0alpha7.train.940.ent5_2.o1.0alpha7.train.940.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent5_2",
"arg2_id": "1.0alpha7.train.940.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel0s1.0alpha7.train.940.ent5_2.o1.0alpha7.train.940.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent5_2",
"arg2_id": "1.0alpha7.train.940.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent0_0.o1.0alpha7.train.940.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent0_0",
"arg2_id": "1.0alpha7.train.940.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent0_0.o1.0alpha7.train.940.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent0_0",
"arg2_id": "1.0alpha7.train.940.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent0_0.o1.0alpha7.train.940.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent0_0",
"arg2_id": "1.0alpha7.train.940.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent1_1.o1.0alpha7.train.940.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent1_1",
"arg2_id": "1.0alpha7.train.940.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent1_1.o1.0alpha7.train.940.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent1_1",
"arg2_id": "1.0alpha7.train.940.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent1_1.o1.0alpha7.train.940.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent1_1",
"arg2_id": "1.0alpha7.train.940.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent2_0.o1.0alpha7.train.940.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent2_0",
"arg2_id": "1.0alpha7.train.940.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent2_0.o1.0alpha7.train.940.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent2_0",
"arg2_id": "1.0alpha7.train.940.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel1s1.0alpha7.train.940.ent2_0.o1.0alpha7.train.940.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent2_0",
"arg2_id": "1.0alpha7.train.940.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel2s1.0alpha7.train.940.ent0_0.o1.0alpha7.train.940.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent0_0",
"arg2_id": "1.0alpha7.train.940.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel2s1.0alpha7.train.940.ent1_1.o1.0alpha7.train.940.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent1_1",
"arg2_id": "1.0alpha7.train.940.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.940.rel2s1.0alpha7.train.940.ent2_0.o1.0alpha7.train.940.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.940.ent2_0",
"arg2_id": "1.0alpha7.train.940.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.941 | 20187444 | [
{
"id": "1.0alpha7.train.941.sent",
"type": "sentence",
"text": [
"However, HTH showed cooperative DNA binding with EXD ( Fig. 6B, lane 8) or PBX1 (data not shown) in an electrophoretic mobility shift assay in which the DNA (TGATTGAC) contained the binding site for both EXD (TGAT) and HTH (TGAC)."
],
"offsets": [
[
0,
237
]
]
}
] | [
{
"id": "1.0alpha7.train.941.ent0_0",
"type": "DNA",
"text": [
"TGAT"
],
"offsets": [
[
215,
219
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.941.ent1_0",
"type": "protein",
"text": [
"EXD"
],
"offsets": [
[
51,
54
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P40427"
}
]
},
{
"id": "1.0alpha7.train.941.ent2_1",
"type": "protein",
"text": [
"EXD"
],
"offsets": [
[
210,
213
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P40427"
}
]
},
{
"id": "1.0alpha7.train.941.ent3_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
33,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.941.ent4_1",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
158,
161
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.941.ent5_0",
"type": "DNA",
"text": [
"TGATTGAC"
],
"offsets": [
[
163,
171
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.941.ent6_0",
"type": "DNA",
"text": [
"TGAC"
],
"offsets": [
[
231,
235
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.941.ent7_0",
"type": "protein-motif",
"text": [
"HTH"
],
"offsets": [
[
10,
13
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.941.ent8_1",
"type": "protein-motif",
"text": [
"HTH"
],
"offsets": [
[
226,
229
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.941.ent9_0",
"type": "protein",
"text": [
"PBX1"
],
"offsets": [
[
79,
83
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5087"
},
{
"db_name": "hgnc",
"db_id": "PBX1"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.941.coref0",
"entity_ids": [
"1.0alpha7.train.941.ent0_0"
]
},
{
"id": "1.0alpha7.train.941.coref1",
"entity_ids": [
"1.0alpha7.train.941.ent1_0",
"1.0alpha7.train.941.ent2_1"
]
},
{
"id": "1.0alpha7.train.941.coref2",
"entity_ids": [
"1.0alpha7.train.941.ent3_0",
"1.0alpha7.train.941.ent4_1"
]
},
{
"id": "1.0alpha7.train.941.coref3",
"entity_ids": [
"1.0alpha7.train.941.ent5_0"
]
},
{
"id": "1.0alpha7.train.941.coref4",
"entity_ids": [
"1.0alpha7.train.941.ent6_0"
]
},
{
"id": "1.0alpha7.train.941.coref5",
"entity_ids": [
"1.0alpha7.train.941.ent7_0",
"1.0alpha7.train.941.ent8_1"
]
},
{
"id": "1.0alpha7.train.941.coref6",
"entity_ids": [
"1.0alpha7.train.941.ent9_0"
]
}
] | [
{
"id": "1.0alpha7.train.941.rel0s1.0alpha7.train.941.ent3_0.o1.0alpha7.train.941.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent3_0",
"arg2_id": "1.0alpha7.train.941.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel0s1.0alpha7.train.941.ent3_0.o1.0alpha7.train.941.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent3_0",
"arg2_id": "1.0alpha7.train.941.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel0s1.0alpha7.train.941.ent4_1.o1.0alpha7.train.941.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent4_1",
"arg2_id": "1.0alpha7.train.941.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel0s1.0alpha7.train.941.ent4_1.o1.0alpha7.train.941.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent4_1",
"arg2_id": "1.0alpha7.train.941.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel1s1.0alpha7.train.941.ent1_0.o1.0alpha7.train.941.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent1_0",
"arg2_id": "1.0alpha7.train.941.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel1s1.0alpha7.train.941.ent1_0.o1.0alpha7.train.941.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent1_0",
"arg2_id": "1.0alpha7.train.941.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel1s1.0alpha7.train.941.ent2_1.o1.0alpha7.train.941.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent2_1",
"arg2_id": "1.0alpha7.train.941.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel1s1.0alpha7.train.941.ent2_1.o1.0alpha7.train.941.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent2_1",
"arg2_id": "1.0alpha7.train.941.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel2s1.0alpha7.train.941.ent3_0.o1.0alpha7.train.941.ent9_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent3_0",
"arg2_id": "1.0alpha7.train.941.ent9_0",
"normalized": []
},
{
"id": "1.0alpha7.train.941.rel2s1.0alpha7.train.941.ent4_1.o1.0alpha7.train.941.ent9_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.941.ent4_1",
"arg2_id": "1.0alpha7.train.941.ent9_0",
"normalized": []
}
] |
1.0alpha7.train.942 | 9348550 | [
{
"id": "1.0alpha7.train.942.sent",
"type": "sentence",
"text": [
"Thus, the putative NES sequences in APC-25 also appear to be required for binding of APC-25 to beta-cat, and the ability of APC-25 to modulate beta-cat signaling may be defined by the ability to bind and retain beta-cat in the cytoplasm."
],
"offsets": [
[
0,
244
]
]
}
] | [
{
"id": "1.0alpha7.train.942.ent0_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
38,
41
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
},
{
"db_name": "uniprot",
"db_id": "P25054"
}
]
},
{
"id": "1.0alpha7.train.942.ent1_1",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
88,
91
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
},
{
"db_name": "uniprot",
"db_id": "P25054"
}
]
},
{
"id": "1.0alpha7.train.942.ent2_2",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
129,
132
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
},
{
"db_name": "uniprot",
"db_id": "P25054"
}
]
},
{
"id": "1.0alpha7.train.942.ent3_0",
"type": "protein-region",
"text": [
"APC-25"
],
"offsets": [
[
38,
44
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.942.ent4_1",
"type": "protein-region",
"text": [
"APC-25"
],
"offsets": [
[
88,
94
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.942.ent5_2",
"type": "protein-region",
"text": [
"APC-25"
],
"offsets": [
[
129,
135
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.942.ent6_0",
"type": "protein-motif",
"text": [
"NES"
],
"offsets": [
[
20,
23
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.942.ent7_0",
"type": "protein",
"text": [
"beta-cat"
],
"offsets": [
[
99,
107
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.942.ent8_1",
"type": "protein",
"text": [
"beta-cat"
],
"offsets": [
[
149,
157
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.942.ent9_2",
"type": "protein",
"text": [
"beta-cat"
],
"offsets": [
[
218,
226
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.942.coref0",
"entity_ids": [
"1.0alpha7.train.942.ent0_0",
"1.0alpha7.train.942.ent1_1",
"1.0alpha7.train.942.ent2_2"
]
},
{
"id": "1.0alpha7.train.942.coref1",
"entity_ids": [
"1.0alpha7.train.942.ent3_0",
"1.0alpha7.train.942.ent4_1",
"1.0alpha7.train.942.ent5_2"
]
},
{
"id": "1.0alpha7.train.942.coref2",
"entity_ids": [
"1.0alpha7.train.942.ent6_0"
]
},
{
"id": "1.0alpha7.train.942.coref3",
"entity_ids": [
"1.0alpha7.train.942.ent7_0",
"1.0alpha7.train.942.ent8_1",
"1.0alpha7.train.942.ent9_2"
]
}
] | [
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent3_0.o1.0alpha7.train.942.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent3_0",
"arg2_id": "1.0alpha7.train.942.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent3_0.o1.0alpha7.train.942.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent3_0",
"arg2_id": "1.0alpha7.train.942.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent3_0.o1.0alpha7.train.942.ent9_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent3_0",
"arg2_id": "1.0alpha7.train.942.ent9_2",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent4_1.o1.0alpha7.train.942.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent4_1",
"arg2_id": "1.0alpha7.train.942.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent4_1.o1.0alpha7.train.942.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent4_1",
"arg2_id": "1.0alpha7.train.942.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent4_1.o1.0alpha7.train.942.ent9_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent4_1",
"arg2_id": "1.0alpha7.train.942.ent9_2",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent5_2.o1.0alpha7.train.942.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent5_2",
"arg2_id": "1.0alpha7.train.942.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent5_2.o1.0alpha7.train.942.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent5_2",
"arg2_id": "1.0alpha7.train.942.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel0s1.0alpha7.train.942.ent5_2.o1.0alpha7.train.942.ent9_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent5_2",
"arg2_id": "1.0alpha7.train.942.ent9_2",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent0_0.o1.0alpha7.train.942.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent0_0",
"arg2_id": "1.0alpha7.train.942.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent0_0.o1.0alpha7.train.942.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent0_0",
"arg2_id": "1.0alpha7.train.942.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent0_0.o1.0alpha7.train.942.ent9_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent0_0",
"arg2_id": "1.0alpha7.train.942.ent9_2",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent1_1.o1.0alpha7.train.942.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent1_1",
"arg2_id": "1.0alpha7.train.942.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent1_1.o1.0alpha7.train.942.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent1_1",
"arg2_id": "1.0alpha7.train.942.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent1_1.o1.0alpha7.train.942.ent9_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent1_1",
"arg2_id": "1.0alpha7.train.942.ent9_2",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent2_2.o1.0alpha7.train.942.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent2_2",
"arg2_id": "1.0alpha7.train.942.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent2_2.o1.0alpha7.train.942.ent8_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent2_2",
"arg2_id": "1.0alpha7.train.942.ent8_1",
"normalized": []
},
{
"id": "1.0alpha7.train.942.rel1s1.0alpha7.train.942.ent2_2.o1.0alpha7.train.942.ent9_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.942.ent2_2",
"arg2_id": "1.0alpha7.train.942.ent9_2",
"normalized": []
}
] |
1.0alpha7.train.943 | 30514 | [
{
"id": "1.0alpha7.train.943.sent",
"type": "sentence",
"text": [
"According to Chalovich et al.(1987), caldesmon acts as a competitive inhibitor of the binding of myosin to actin, because the COOH-terminal end of caldesmon that does not bind to myosin is able to inhibit ATP hydrolysis."
],
"offsets": [
[
0,
230
]
]
}
] | [
{
"id": "1.0alpha7.train.943.ent0_0",
"type": "protein",
"text": [
"caldesmon"
],
"offsets": [
[
39,
48
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "800"
},
{
"db_name": "hgnc",
"db_id": "CALD1"
},
{
"db_name": "uniprot",
"db_id": "E9PGZ1"
}
]
},
{
"id": "1.0alpha7.train.943.ent1_1",
"type": "protein",
"text": [
"caldesmon"
],
"offsets": [
[
154,
163
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "800"
},
{
"db_name": "hgnc",
"db_id": "CALD1"
},
{
"db_name": "uniprot",
"db_id": "E9PGZ1"
}
]
},
{
"id": "1.0alpha7.train.943.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
112,
117
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.943.ent3_0",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
215,
218
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
},
{
"id": "1.0alpha7.train.943.ent4_0",
"type": "protein-complex",
"text": [
"myosin"
],
"offsets": [
[
101,
107
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.943.ent5_1",
"type": "protein-complex",
"text": [
"myosin"
],
"offsets": [
[
188,
194
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.943.coref0",
"entity_ids": [
"1.0alpha7.train.943.ent0_0",
"1.0alpha7.train.943.ent1_1"
]
},
{
"id": "1.0alpha7.train.943.coref1",
"entity_ids": [
"1.0alpha7.train.943.ent2_0"
]
},
{
"id": "1.0alpha7.train.943.coref2",
"entity_ids": [
"1.0alpha7.train.943.ent3_0"
]
},
{
"id": "1.0alpha7.train.943.coref3",
"entity_ids": [
"1.0alpha7.train.943.ent4_0",
"1.0alpha7.train.943.ent5_1"
]
}
] | [
{
"id": "1.0alpha7.train.943.rel0s1.0alpha7.train.943.ent0_0.o1.0alpha7.train.943.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent0_0",
"arg2_id": "1.0alpha7.train.943.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel0s1.0alpha7.train.943.ent1_1.o1.0alpha7.train.943.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent1_1",
"arg2_id": "1.0alpha7.train.943.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel1s1.0alpha7.train.943.ent2_0.o1.0alpha7.train.943.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent2_0",
"arg2_id": "1.0alpha7.train.943.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel1s1.0alpha7.train.943.ent2_0.o1.0alpha7.train.943.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent2_0",
"arg2_id": "1.0alpha7.train.943.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel2s1.0alpha7.train.943.ent0_0.o1.0alpha7.train.943.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent0_0",
"arg2_id": "1.0alpha7.train.943.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel2s1.0alpha7.train.943.ent0_0.o1.0alpha7.train.943.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent0_0",
"arg2_id": "1.0alpha7.train.943.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel2s1.0alpha7.train.943.ent1_1.o1.0alpha7.train.943.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent1_1",
"arg2_id": "1.0alpha7.train.943.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.943.rel2s1.0alpha7.train.943.ent1_1.o1.0alpha7.train.943.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.943.ent1_1",
"arg2_id": "1.0alpha7.train.943.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.944 | 8441555 | [
{
"id": "1.0alpha7.train.944.sent",
"type": "sentence",
"text": [
"9 EMSA has demonstrated that expression of human Flk-1/KDR is mediated by Sp1 binding to a CT-rich recognition sequence within the -79 to -68 region of the Flk-1/KDR promoter."
],
"offsets": [
[
0,
179
]
]
}
] | [
{
"id": "1.0alpha7.train.944.ent0_0",
"type": "DNA",
"text": [
"CT-rich recognition sequence"
],
"offsets": [
[
94,
122
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.944.ent1_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
76,
79
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.944.ent2_0",
"type": "assay",
"text": [
"EMSA"
],
"offsets": [
[
2,
6
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.944.ent3_0",
"type": "DNA",
"text": [
"Flk-1/KDR promoter"
],
"offsets": [
[
160,
178
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.944.ent4_0",
"type": "protein",
"text": [
"Flk-1/KDR"
],
"offsets": [
[
50,
59
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3791"
},
{
"db_name": "hgnc",
"db_id": "KDR"
},
{
"db_name": "uniprot",
"db_id": "P35968"
}
]
},
{
"id": "1.0alpha7.train.944.ent5_1",
"type": "protein",
"text": [
"Flk-1/KDR"
],
"offsets": [
[
160,
169
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3791"
},
{
"db_name": "hgnc",
"db_id": "KDR"
},
{
"db_name": "uniprot",
"db_id": "P35968"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.944.coref0",
"entity_ids": [
"1.0alpha7.train.944.ent0_0"
]
},
{
"id": "1.0alpha7.train.944.coref1",
"entity_ids": [
"1.0alpha7.train.944.ent1_0"
]
},
{
"id": "1.0alpha7.train.944.coref2",
"entity_ids": [
"1.0alpha7.train.944.ent2_0"
]
},
{
"id": "1.0alpha7.train.944.coref3",
"entity_ids": [
"1.0alpha7.train.944.ent3_0"
]
},
{
"id": "1.0alpha7.train.944.coref4",
"entity_ids": [
"1.0alpha7.train.944.ent4_0",
"1.0alpha7.train.944.ent5_1"
]
}
] | [
{
"id": "1.0alpha7.train.944.rel0s1.0alpha7.train.944.ent0_0.o1.0alpha7.train.944.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.944.ent0_0",
"arg2_id": "1.0alpha7.train.944.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.944.rel1s1.0alpha7.train.944.ent1_0.o1.0alpha7.train.944.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.944.ent1_0",
"arg2_id": "1.0alpha7.train.944.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.945 | 11328411 | [
{
"id": "1.0alpha7.train.945.sent",
"type": "sentence",
"text": [
"For example, additional interactions between the β3-β4 loop and Ins(1,3,4,5)P4 also contribute to high‐affinity binding of PH domains to PI3K products; K53 in BTK is critical for the BTK‐PH domain to bind PtdIns(3,4,5)P3 (Hyvonen et al., 1995)."
],
"offsets": [
[
0,
244
]
]
}
] | [
{
"id": "1.0alpha7.train.945.ent0_0",
"type": "chemical",
"text": [
"Ins(1,3,4,5)P4"
],
"offsets": [
[
64,
78
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "107758"
}
]
},
{
"id": "1.0alpha7.train.945.ent1_0",
"type": "protein-family",
"text": [
"PI3K"
],
"offsets": [
[
137,
141
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000403"
}
]
},
{
"id": "1.0alpha7.train.945.ent2_0",
"type": "protein-region",
"text": [
"β3-β4 loop"
],
"offsets": [
[
49,
59
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.945.ent3_0",
"type": "protein-domain",
"text": [
"BTK‐PH domain"
],
"offsets": [
[
183,
196
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.945.ent4_0",
"type": "chemical",
"text": [
"PtdIns(3,4,5)P3"
],
"offsets": [
[
205,
220
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "101362114"
}
]
},
{
"id": "1.0alpha7.train.945.ent5_0",
"type": "amino-acid",
"text": [
"K53"
],
"offsets": [
[
152,
155
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.945.ent6_0",
"type": "chemical",
"text": [
"PI3K products"
],
"offsets": [
[
137,
150
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.945.ent7_0",
"type": "protein-domain",
"text": [
"PH domains"
],
"offsets": [
[
123,
133
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.945.ent8_0",
"type": "protein",
"text": [
"BTK"
],
"offsets": [
[
159,
162
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "695"
},
{
"db_name": "hgnc",
"db_id": "BTK"
}
]
},
{
"id": "1.0alpha7.train.945.ent9_1",
"type": "protein",
"text": [
"BTK"
],
"offsets": [
[
183,
186
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "695"
},
{
"db_name": "hgnc",
"db_id": "BTK"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.945.coref0",
"entity_ids": [
"1.0alpha7.train.945.ent0_0"
]
},
{
"id": "1.0alpha7.train.945.coref1",
"entity_ids": [
"1.0alpha7.train.945.ent1_0"
]
},
{
"id": "1.0alpha7.train.945.coref2",
"entity_ids": [
"1.0alpha7.train.945.ent2_0"
]
},
{
"id": "1.0alpha7.train.945.coref3",
"entity_ids": [
"1.0alpha7.train.945.ent3_0"
]
},
{
"id": "1.0alpha7.train.945.coref4",
"entity_ids": [
"1.0alpha7.train.945.ent4_0"
]
},
{
"id": "1.0alpha7.train.945.coref5",
"entity_ids": [
"1.0alpha7.train.945.ent5_0"
]
},
{
"id": "1.0alpha7.train.945.coref6",
"entity_ids": [
"1.0alpha7.train.945.ent6_0"
]
},
{
"id": "1.0alpha7.train.945.coref7",
"entity_ids": [
"1.0alpha7.train.945.ent7_0"
]
},
{
"id": "1.0alpha7.train.945.coref8",
"entity_ids": [
"1.0alpha7.train.945.ent8_0",
"1.0alpha7.train.945.ent9_1"
]
}
] | [] |
1.0alpha7.train.946 | 1650700 | [
{
"id": "1.0alpha7.train.946.sent",
"type": "sentence",
"text": [
"A densitometric analysis of the Coomassie Blue-stained proteins indicated that the beta1D construct bound 9 times more talin, and the beta7 construct bound 8.4 times more filamin than the beta1A model protein (Fig. 8)."
],
"offsets": [
[
0,
223
]
]
}
] | [
{
"id": "1.0alpha7.train.946.ent0_0",
"type": "reagent",
"text": [
"Coomassie Blue"
],
"offsets": [
[
32,
46
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.946.ent1_0",
"type": "protein-family",
"text": [
"filamin"
],
"offsets": [
[
174,
181
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR028559"
}
]
},
{
"id": "1.0alpha7.train.946.ent2_0",
"type": "experimental-construct",
"text": [
"beta7"
],
"offsets": [
[
136,
141
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.946.ent3_0",
"type": "protein-family",
"text": [
"talin"
],
"offsets": [
[
121,
126
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR015224"
}
]
},
{
"id": "1.0alpha7.train.946.ent4_0",
"type": "experimental-construct",
"text": [
"beta1D"
],
"offsets": [
[
84,
90
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.946.ent5_0",
"type": "protein",
"text": [
"beta1A"
],
"offsets": [
[
192,
198
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.946.coref0",
"entity_ids": [
"1.0alpha7.train.946.ent0_0"
]
},
{
"id": "1.0alpha7.train.946.coref1",
"entity_ids": [
"1.0alpha7.train.946.ent1_0"
]
},
{
"id": "1.0alpha7.train.946.coref2",
"entity_ids": [
"1.0alpha7.train.946.ent2_0"
]
},
{
"id": "1.0alpha7.train.946.coref3",
"entity_ids": [
"1.0alpha7.train.946.ent3_0"
]
},
{
"id": "1.0alpha7.train.946.coref4",
"entity_ids": [
"1.0alpha7.train.946.ent4_0"
]
},
{
"id": "1.0alpha7.train.946.coref5",
"entity_ids": [
"1.0alpha7.train.946.ent5_0"
]
}
] | [] |
1.0alpha7.train.947 | 3177174 | [
{
"id": "1.0alpha7.train.947.sent",
"type": "sentence",
"text": [
"B, comparison of holo-Tf binding to neo, TfR1, or TfR2-alpha cells."
],
"offsets": [
[
0,
71
]
]
}
] | [
{
"id": "1.0alpha7.train.947.ent0_0",
"type": "cell",
"text": [
"neo"
],
"offsets": [
[
38,
41
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.947.ent1_0",
"type": "cell",
"text": [
"TfR2-alpha cells"
],
"offsets": [
[
54,
70
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.947.ent2_0",
"type": "protein",
"text": [
"holo-Tf"
],
"offsets": [
[
18,
25
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.947.ent3_0",
"type": "cell",
"text": [
"TfR1"
],
"offsets": [
[
44,
48
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.947.coref0",
"entity_ids": [
"1.0alpha7.train.947.ent0_0"
]
},
{
"id": "1.0alpha7.train.947.coref1",
"entity_ids": [
"1.0alpha7.train.947.ent1_0"
]
},
{
"id": "1.0alpha7.train.947.coref2",
"entity_ids": [
"1.0alpha7.train.947.ent2_0"
]
},
{
"id": "1.0alpha7.train.947.coref3",
"entity_ids": [
"1.0alpha7.train.947.ent3_0"
]
}
] | [] |
1.0alpha7.train.948 | 2501532 | [
{
"id": "1.0alpha7.train.948.sent",
"type": "sentence",
"text": [
"In the absence of molybdate, ATP is not very effective in promoting p23 binding by wild type hsp90."
],
"offsets": [
[
0,
103
]
]
}
] | [
{
"id": "1.0alpha7.train.948.ent0_0",
"type": "chemical",
"text": [
"molybdate"
],
"offsets": [
[
19,
28
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "24621"
}
]
},
{
"id": "1.0alpha7.train.948.ent1_0",
"type": "protein-family",
"text": [
"hsp90"
],
"offsets": [
[
97,
102
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001404"
}
]
},
{
"id": "1.0alpha7.train.948.ent2_0",
"type": "protein",
"text": [
"p23"
],
"offsets": [
[
71,
74
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10728"
},
{
"db_name": "hgnc",
"db_id": "PTGES3"
},
{
"db_name": "uniprot",
"db_id": "Q15185"
}
]
},
{
"id": "1.0alpha7.train.948.ent3_0",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
31,
34
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.948.coref0",
"entity_ids": [
"1.0alpha7.train.948.ent0_0"
]
},
{
"id": "1.0alpha7.train.948.coref1",
"entity_ids": [
"1.0alpha7.train.948.ent1_0"
]
},
{
"id": "1.0alpha7.train.948.coref2",
"entity_ids": [
"1.0alpha7.train.948.ent2_0"
]
},
{
"id": "1.0alpha7.train.948.coref3",
"entity_ids": [
"1.0alpha7.train.948.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.948.rel0s1.0alpha7.train.948.ent1_0.o1.0alpha7.train.948.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.948.ent1_0",
"arg2_id": "1.0alpha7.train.948.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.949 | 19707035 | [
{
"id": "1.0alpha7.train.949.sent",
"type": "sentence",
"text": [
"Consistent with our finding that Mbt only binds to GTP-loaded Cdc42, expression of Cdc42T17N had only minor effects on Mbt localisation and the AJs morphology ( Fig. 8K,L)."
],
"offsets": [
[
0,
175
]
]
}
] | [
{
"id": "1.0alpha7.train.949.ent0_0",
"type": "organelle",
"text": [
"AJs"
],
"offsets": [
[
147,
150
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.949.ent1_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
53,
56
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.949.ent2_0",
"type": "protein",
"text": [
"GTP-loaded Cdc42"
],
"offsets": [
[
53,
69
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.949.ent3_0",
"type": "protein",
"text": [
"Mbt"
],
"offsets": [
[
34,
37
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q9VXE5"
}
]
},
{
"id": "1.0alpha7.train.949.ent4_1",
"type": "protein",
"text": [
"Mbt"
],
"offsets": [
[
122,
125
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q9VXE5"
}
]
},
{
"id": "1.0alpha7.train.949.ent5_0",
"type": "protein",
"text": [
"Cdc42T17N"
],
"offsets": [
[
85,
94
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.949.ent6_0",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
64,
69
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.949.coref0",
"entity_ids": [
"1.0alpha7.train.949.ent0_0"
]
},
{
"id": "1.0alpha7.train.949.coref1",
"entity_ids": [
"1.0alpha7.train.949.ent1_0"
]
},
{
"id": "1.0alpha7.train.949.coref2",
"entity_ids": [
"1.0alpha7.train.949.ent2_0"
]
},
{
"id": "1.0alpha7.train.949.coref3",
"entity_ids": [
"1.0alpha7.train.949.ent3_0",
"1.0alpha7.train.949.ent4_1"
]
},
{
"id": "1.0alpha7.train.949.coref4",
"entity_ids": [
"1.0alpha7.train.949.ent5_0"
]
},
{
"id": "1.0alpha7.train.949.coref5",
"entity_ids": [
"1.0alpha7.train.949.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.949.rel0s1.0alpha7.train.949.ent2_0.o1.0alpha7.train.949.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.949.ent2_0",
"arg2_id": "1.0alpha7.train.949.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.949.rel0s1.0alpha7.train.949.ent2_0.o1.0alpha7.train.949.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.949.ent2_0",
"arg2_id": "1.0alpha7.train.949.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.949.rel1s1.0alpha7.train.949.ent1_0.o1.0alpha7.train.949.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.949.ent1_0",
"arg2_id": "1.0alpha7.train.949.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.950 | 9766699 | [
{
"id": "1.0alpha7.train.950.sent",
"type": "sentence",
"text": [
"Recent studies have revealed that the PDZ domain binds to unique COOH-terminal motifs of target proteins (Saras and Heldin, 1996), which are found in a large number of transmembrane proteins, such as N-methyl-d-aspartate receptors and Shaker-type K+ channel (Kim et al., 1995; Kornau et al., 1995; Niethammer et al., 1996)."
],
"offsets": [
[
0,
323
]
]
}
] | [
{
"id": "1.0alpha7.train.950.ent0_0",
"type": "protein-motif",
"text": [
"COOH-terminal motifs"
],
"offsets": [
[
65,
85
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.950.ent1_0",
"type": "protein-complex",
"text": [
"Shaker-type K+ channel"
],
"offsets": [
[
235,
257
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.950.ent2_0",
"type": "protein-domain",
"text": [
"PDZ domain"
],
"offsets": [
[
38,
48
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.950.ent3_0",
"type": "protein-family",
"text": [
"N-methyl-d-aspartate receptors"
],
"offsets": [
[
200,
230
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.950.ent4_0",
"type": "protein-family",
"text": [
"transmembrane proteins"
],
"offsets": [
[
168,
190
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.950.coref0",
"entity_ids": [
"1.0alpha7.train.950.ent0_0"
]
},
{
"id": "1.0alpha7.train.950.coref1",
"entity_ids": [
"1.0alpha7.train.950.ent1_0"
]
},
{
"id": "1.0alpha7.train.950.coref2",
"entity_ids": [
"1.0alpha7.train.950.ent2_0"
]
},
{
"id": "1.0alpha7.train.950.coref3",
"entity_ids": [
"1.0alpha7.train.950.ent3_0"
]
},
{
"id": "1.0alpha7.train.950.coref4",
"entity_ids": [
"1.0alpha7.train.950.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.950.rel0s1.0alpha7.train.950.ent0_0.o1.0alpha7.train.950.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.950.ent0_0",
"arg2_id": "1.0alpha7.train.950.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.951 | 1155288 | [
{
"id": "1.0alpha7.train.951.sent",
"type": "sentence",
"text": [
"RID of RGL is known to interact with the GTP-bound form of Ras through its effector loop ( 5, 25, 26)."
],
"offsets": [
[
0,
107
]
]
}
] | [
{
"id": "1.0alpha7.train.951.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
43,
46
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.951.ent1_0",
"type": "protein-domain",
"text": [
"RID"
],
"offsets": [
[
0,
3
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.951.ent2_0",
"type": "protein",
"text": [
"RGL"
],
"offsets": [
[
8,
11
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "23179"
},
{
"db_name": "hgnc",
"db_id": "RGL1"
},
{
"db_name": "uniprot",
"db_id": "Q9NZL6"
}
]
},
{
"id": "1.0alpha7.train.951.ent3_0",
"type": "protein-family",
"text": [
"Ras"
],
"offsets": [
[
62,
65
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR020849"
}
]
},
{
"id": "1.0alpha7.train.951.ent4_0",
"type": "protein",
"text": [
"GTP-bound form of Ras"
],
"offsets": [
[
43,
65
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.951.coref0",
"entity_ids": [
"1.0alpha7.train.951.ent0_0"
]
},
{
"id": "1.0alpha7.train.951.coref1",
"entity_ids": [
"1.0alpha7.train.951.ent1_0"
]
},
{
"id": "1.0alpha7.train.951.coref2",
"entity_ids": [
"1.0alpha7.train.951.ent2_0"
]
},
{
"id": "1.0alpha7.train.951.coref3",
"entity_ids": [
"1.0alpha7.train.951.ent3_0"
]
},
{
"id": "1.0alpha7.train.951.coref4",
"entity_ids": [
"1.0alpha7.train.951.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.951.rel0s1.0alpha7.train.951.ent0_0.o1.0alpha7.train.951.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.951.ent0_0",
"arg2_id": "1.0alpha7.train.951.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.951.rel1s1.0alpha7.train.951.ent2_0.o1.0alpha7.train.951.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.951.ent2_0",
"arg2_id": "1.0alpha7.train.951.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.952 | 4598677 | [
{
"id": "1.0alpha7.train.952.sent",
"type": "sentence",
"text": [
"Interestingly, using a variety of different methods, we observed that 1 mol of TAF130p bound 4 mol of TBP."
],
"offsets": [
[
0,
108
]
]
}
] | [
{
"id": "1.0alpha7.train.952.ent0_0",
"type": "protein",
"text": [
"TBP"
],
"offsets": [
[
104,
107
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.952.ent1_0",
"type": "protein",
"text": [
"TAF130p"
],
"offsets": [
[
80,
87
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P46677"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.952.coref0",
"entity_ids": [
"1.0alpha7.train.952.ent0_0"
]
},
{
"id": "1.0alpha7.train.952.coref1",
"entity_ids": [
"1.0alpha7.train.952.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.952.rel0s1.0alpha7.train.952.ent0_0.o1.0alpha7.train.952.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.952.ent0_0",
"arg2_id": "1.0alpha7.train.952.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.953 | 9572790 | [
{
"id": "1.0alpha7.train.953.sent",
"type": "sentence",
"text": [
"In a similar fashion, binding of hnRNP A2 to the RTS might promote unwinding of secondary structure in the mRNA to reduce a kinetic barrier to formation of the translation initiation complex."
],
"offsets": [
[
0,
193
]
]
}
] | [
{
"id": "1.0alpha7.train.953.ent0_0",
"type": "protein",
"text": [
"hnRNP A2"
],
"offsets": [
[
34,
42
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3181"
},
{
"db_name": "hgnc",
"db_id": "HNRNPA2B1"
},
{
"db_name": "uniprot",
"db_id": "P22626"
}
]
},
{
"id": "1.0alpha7.train.953.ent1_0",
"type": "RNA",
"text": [
"mRNA"
],
"offsets": [
[
109,
113
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.953.ent2_0",
"type": "RNA",
"text": [
"RTS"
],
"offsets": [
[
51,
54
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.953.ent3_0",
"type": "protein-complex",
"text": [
"translation initiation complex"
],
"offsets": [
[
162,
192
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.953.coref0",
"entity_ids": [
"1.0alpha7.train.953.ent0_0"
]
},
{
"id": "1.0alpha7.train.953.coref1",
"entity_ids": [
"1.0alpha7.train.953.ent1_0"
]
},
{
"id": "1.0alpha7.train.953.coref2",
"entity_ids": [
"1.0alpha7.train.953.ent2_0"
]
},
{
"id": "1.0alpha7.train.953.coref3",
"entity_ids": [
"1.0alpha7.train.953.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.953.rel0s1.0alpha7.train.953.ent0_0.o1.0alpha7.train.953.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.953.ent0_0",
"arg2_id": "1.0alpha7.train.953.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.954 | 16345411 | [
{
"id": "1.0alpha7.train.954.sent",
"type": "sentence",
"text": [
"However, the cleaved gelsolin preferentially severed actin filaments even when briefly incubated with excess monomeric actin (Fig. 3A, bottom), suggesting that the cleaved gelsolin generated in cells during apoptosis may preferentially sever actin filaments rather than bind monomeric actin."
],
"offsets": [
[
0,
291
]
]
}
] | [
{
"id": "1.0alpha7.train.954.ent0_0",
"type": "protein",
"text": [
"monomeric actin"
],
"offsets": [
[
109,
124
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.954.ent1_1",
"type": "protein",
"text": [
"monomeric actin"
],
"offsets": [
[
275,
290
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.954.ent2_0",
"type": "protein",
"text": [
"actin filaments"
],
"offsets": [
[
53,
68
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.954.ent3_1",
"type": "protein",
"text": [
"actin filaments"
],
"offsets": [
[
242,
257
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.954.ent4_0",
"type": "protein",
"text": [
"gelsolin"
],
"offsets": [
[
21,
29
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2934"
},
{
"db_name": "hgnc",
"db_id": "GSN"
},
{
"db_name": "uniprot",
"db_id": "P06396"
}
]
},
{
"id": "1.0alpha7.train.954.ent5_1",
"type": "protein",
"text": [
"gelsolin"
],
"offsets": [
[
172,
180
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2934"
},
{
"db_name": "hgnc",
"db_id": "GSN"
},
{
"db_name": "uniprot",
"db_id": "P06396"
}
]
},
{
"id": "1.0alpha7.train.954.ent6_0",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
53,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
},
{
"id": "1.0alpha7.train.954.ent7_1",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
119,
124
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
},
{
"id": "1.0alpha7.train.954.ent8_2",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
242,
247
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
},
{
"id": "1.0alpha7.train.954.ent9_3",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
285,
290
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.954.coref0",
"entity_ids": [
"1.0alpha7.train.954.ent0_0",
"1.0alpha7.train.954.ent1_1"
]
},
{
"id": "1.0alpha7.train.954.coref1",
"entity_ids": [
"1.0alpha7.train.954.ent2_0",
"1.0alpha7.train.954.ent3_1"
]
},
{
"id": "1.0alpha7.train.954.coref2",
"entity_ids": [
"1.0alpha7.train.954.ent4_0",
"1.0alpha7.train.954.ent5_1"
]
},
{
"id": "1.0alpha7.train.954.coref3",
"entity_ids": [
"1.0alpha7.train.954.ent6_0",
"1.0alpha7.train.954.ent7_1",
"1.0alpha7.train.954.ent8_2",
"1.0alpha7.train.954.ent9_3"
]
}
] | [
{
"id": "1.0alpha7.train.954.rel0s1.0alpha7.train.954.ent2_0.o1.0alpha7.train.954.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent2_0",
"arg2_id": "1.0alpha7.train.954.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel0s1.0alpha7.train.954.ent2_0.o1.0alpha7.train.954.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent2_0",
"arg2_id": "1.0alpha7.train.954.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel0s1.0alpha7.train.954.ent3_1.o1.0alpha7.train.954.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent3_1",
"arg2_id": "1.0alpha7.train.954.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel0s1.0alpha7.train.954.ent3_1.o1.0alpha7.train.954.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent3_1",
"arg2_id": "1.0alpha7.train.954.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent4_0.o1.0alpha7.train.954.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent4_0",
"arg2_id": "1.0alpha7.train.954.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent4_0.o1.0alpha7.train.954.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent4_0",
"arg2_id": "1.0alpha7.train.954.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent4_0.o1.0alpha7.train.954.ent8_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent4_0",
"arg2_id": "1.0alpha7.train.954.ent8_2",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent4_0.o1.0alpha7.train.954.ent9_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent4_0",
"arg2_id": "1.0alpha7.train.954.ent9_3",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent5_1.o1.0alpha7.train.954.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent5_1",
"arg2_id": "1.0alpha7.train.954.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent5_1.o1.0alpha7.train.954.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent5_1",
"arg2_id": "1.0alpha7.train.954.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent5_1.o1.0alpha7.train.954.ent8_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent5_1",
"arg2_id": "1.0alpha7.train.954.ent8_2",
"normalized": []
},
{
"id": "1.0alpha7.train.954.rel1s1.0alpha7.train.954.ent5_1.o1.0alpha7.train.954.ent9_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.954.ent5_1",
"arg2_id": "1.0alpha7.train.954.ent9_3",
"normalized": []
}
] |
1.0alpha7.train.955 | 15909497 | [
{
"id": "1.0alpha7.train.955.sent",
"type": "sentence",
"text": [
"Indeed, two mutations in the HSP82 gene (A97I and G170D) that alter amino acids adjacent to those directly interacting with the nucleotide prevent binding of Sba1p to Hsp90 in vitro (Fig. 5C)."
],
"offsets": [
[
0,
198
]
]
}
] | [
{
"id": "1.0alpha7.train.955.ent0_0",
"type": "protein",
"text": [
"Sba1p"
],
"offsets": [
[
162,
167
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "C7GVJ6"
}
]
},
{
"id": "1.0alpha7.train.955.ent1_0",
"type": "gene",
"text": [
"G170D"
],
"offsets": [
[
53,
58
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.955.ent2_0",
"type": "protein-family",
"text": [
"Hsp90"
],
"offsets": [
[
172,
177
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001404"
}
]
},
{
"id": "1.0alpha7.train.955.ent3_0",
"type": "gene",
"text": [
"A97I"
],
"offsets": [
[
43,
47
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.955.ent4_0",
"type": "gene",
"text": [
"HSP82"
],
"offsets": [
[
31,
36
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.955.coref0",
"entity_ids": [
"1.0alpha7.train.955.ent0_0"
]
},
{
"id": "1.0alpha7.train.955.coref1",
"entity_ids": [
"1.0alpha7.train.955.ent1_0"
]
},
{
"id": "1.0alpha7.train.955.coref2",
"entity_ids": [
"1.0alpha7.train.955.ent2_0"
]
},
{
"id": "1.0alpha7.train.955.coref3",
"entity_ids": [
"1.0alpha7.train.955.ent3_0"
]
},
{
"id": "1.0alpha7.train.955.coref4",
"entity_ids": [
"1.0alpha7.train.955.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.955.rel0s1.0alpha7.train.955.ent0_0.o1.0alpha7.train.955.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.955.ent0_0",
"arg2_id": "1.0alpha7.train.955.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.956 | 25325742 | [
{
"id": "1.0alpha7.train.956.sent",
"type": "sentence",
"text": [
"While wild-type RDGC bound calmodulin in the presence or absence of Ca2+, the interaction between 73I12A and calmodulin was strictly Ca2+ dependent (Figure 2C)."
],
"offsets": [
[
0,
165
]
]
}
] | [
{
"id": "1.0alpha7.train.956.ent0_0",
"type": "chemical",
"text": [
"Ca2+"
],
"offsets": [
[
70,
74
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.956.ent1_1",
"type": "chemical",
"text": [
"Ca2+"
],
"offsets": [
[
136,
140
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.956.ent2_0",
"type": "protein",
"text": [
"RDGC"
],
"offsets": [
[
17,
21
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P40421"
}
]
},
{
"id": "1.0alpha7.train.956.ent3_0",
"type": "protein-family",
"text": [
"calmodulin"
],
"offsets": [
[
29,
39
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039030"
}
]
},
{
"id": "1.0alpha7.train.956.ent4_1",
"type": "protein-family",
"text": [
"calmodulin"
],
"offsets": [
[
112,
122
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR039030"
}
]
},
{
"id": "1.0alpha7.train.956.ent5_0",
"type": "protein",
"text": [
"73I12A"
],
"offsets": [
[
100,
106
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.956.coref0",
"entity_ids": [
"1.0alpha7.train.956.ent0_0",
"1.0alpha7.train.956.ent1_1"
]
},
{
"id": "1.0alpha7.train.956.coref1",
"entity_ids": [
"1.0alpha7.train.956.ent2_0"
]
},
{
"id": "1.0alpha7.train.956.coref2",
"entity_ids": [
"1.0alpha7.train.956.ent3_0",
"1.0alpha7.train.956.ent4_1"
]
},
{
"id": "1.0alpha7.train.956.coref3",
"entity_ids": [
"1.0alpha7.train.956.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.956.rel0s1.0alpha7.train.956.ent2_0.o1.0alpha7.train.956.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.956.ent2_0",
"arg2_id": "1.0alpha7.train.956.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.956.rel0s1.0alpha7.train.956.ent2_0.o1.0alpha7.train.956.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.956.ent2_0",
"arg2_id": "1.0alpha7.train.956.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.956.rel1s1.0alpha7.train.956.ent3_0.o1.0alpha7.train.956.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.956.ent3_0",
"arg2_id": "1.0alpha7.train.956.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.956.rel1s1.0alpha7.train.956.ent4_1.o1.0alpha7.train.956.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.956.ent4_1",
"arg2_id": "1.0alpha7.train.956.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.957 | 11664975 | [
{
"id": "1.0alpha7.train.957.sent",
"type": "sentence",
"text": [
"Footprinting experiments with EBV-positive cells have revealed that EBNA1 binds to the DS element throughout the cell cycle ( Hsieh et al., 1993; Niller et al., 1995)."
],
"offsets": [
[
0,
172
]
]
}
] | [
{
"id": "1.0alpha7.train.957.ent0_0",
"type": "DNA",
"text": [
"DS element"
],
"offsets": [
[
89,
99
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.957.ent1_0",
"type": "cell",
"text": [
"EBV"
],
"offsets": [
[
30,
33
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.957.ent2_0",
"type": "protein",
"text": [
"EBNA1"
],
"offsets": [
[
69,
74
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P03211"
}
]
},
{
"id": "1.0alpha7.train.957.ent3_0",
"type": "cell",
"text": [
"EBV-positive cells"
],
"offsets": [
[
30,
48
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.957.coref0",
"entity_ids": [
"1.0alpha7.train.957.ent0_0"
]
},
{
"id": "1.0alpha7.train.957.coref1",
"entity_ids": [
"1.0alpha7.train.957.ent1_0"
]
},
{
"id": "1.0alpha7.train.957.coref2",
"entity_ids": [
"1.0alpha7.train.957.ent2_0"
]
},
{
"id": "1.0alpha7.train.957.coref3",
"entity_ids": [
"1.0alpha7.train.957.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.957.rel0s1.0alpha7.train.957.ent0_0.o1.0alpha7.train.957.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.957.ent0_0",
"arg2_id": "1.0alpha7.train.957.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.958 | 9128590 | [
{
"id": "1.0alpha7.train.958.sent",
"type": "sentence",
"text": [
"srGAPs increase the intrinsic GTPase activity of Cdc42, which converts the GTP-bound form of Cdc42 into its GDP-bound form, therefore inactivating Cdc42."
],
"offsets": [
[
0,
162
]
]
}
] | [
{
"id": "1.0alpha7.train.958.ent0_0",
"type": "chemical",
"text": [
"GDP"
],
"offsets": [
[
116,
119
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398618"
}
]
},
{
"id": "1.0alpha7.train.958.ent1_0",
"type": "protein",
"text": [
"GTP-bound form of Cdc42"
],
"offsets": [
[
80,
104
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.958.ent2_0",
"type": "protein-family",
"text": [
"srGAPs"
],
"offsets": [
[
0,
6
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.958.ent3_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
80,
83
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.958.ent4_0",
"type": "protein-family",
"text": [
"GTPase"
],
"offsets": [
[
32,
38
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.958.ent5_0",
"type": "protein",
"text": [
"GDP-bound form"
],
"offsets": [
[
116,
130
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.958.ent6_0",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
52,
57
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
},
{
"id": "1.0alpha7.train.958.ent7_1",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
99,
104
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
},
{
"id": "1.0alpha7.train.958.ent8_2",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
156,
161
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.958.coref0",
"entity_ids": [
"1.0alpha7.train.958.ent0_0"
]
},
{
"id": "1.0alpha7.train.958.coref1",
"entity_ids": [
"1.0alpha7.train.958.ent1_0"
]
},
{
"id": "1.0alpha7.train.958.coref2",
"entity_ids": [
"1.0alpha7.train.958.ent2_0"
]
},
{
"id": "1.0alpha7.train.958.coref3",
"entity_ids": [
"1.0alpha7.train.958.ent3_0"
]
},
{
"id": "1.0alpha7.train.958.coref4",
"entity_ids": [
"1.0alpha7.train.958.ent4_0"
]
},
{
"id": "1.0alpha7.train.958.coref5",
"entity_ids": [
"1.0alpha7.train.958.ent5_0"
]
},
{
"id": "1.0alpha7.train.958.coref6",
"entity_ids": [
"1.0alpha7.train.958.ent6_0",
"1.0alpha7.train.958.ent7_1",
"1.0alpha7.train.958.ent8_2"
]
}
] | [
{
"id": "1.0alpha7.train.958.rel0s1.0alpha7.train.958.ent3_0.o1.0alpha7.train.958.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.958.ent3_0",
"arg2_id": "1.0alpha7.train.958.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.958.rel0s1.0alpha7.train.958.ent3_0.o1.0alpha7.train.958.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.958.ent3_0",
"arg2_id": "1.0alpha7.train.958.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.958.rel0s1.0alpha7.train.958.ent3_0.o1.0alpha7.train.958.ent8_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.958.ent3_0",
"arg2_id": "1.0alpha7.train.958.ent8_2",
"normalized": []
},
{
"id": "1.0alpha7.train.958.rel1s1.0alpha7.train.958.ent0_0.o1.0alpha7.train.958.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.958.ent0_0",
"arg2_id": "1.0alpha7.train.958.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.958.rel1s1.0alpha7.train.958.ent0_0.o1.0alpha7.train.958.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.958.ent0_0",
"arg2_id": "1.0alpha7.train.958.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.958.rel1s1.0alpha7.train.958.ent0_0.o1.0alpha7.train.958.ent8_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.958.ent0_0",
"arg2_id": "1.0alpha7.train.958.ent8_2",
"normalized": []
}
] |
1.0alpha7.train.959 | 4407405 | [
{
"id": "1.0alpha7.train.959.sent",
"type": "sentence",
"text": [
"Site II seems to be generally less well conserved (for example, Arp1 and β- and γ-tubulin), and this may explain why these target proteins bind less well to prefoldin than actin and α-tubulin (see Fig. 4; the fragments of Arp1 and β- and γ-tubulin also show binding to CCT, whereas actin and α-tubulin do not)."
],
"offsets": [
[
0,
310
]
]
}
] | [
{
"id": "1.0alpha7.train.959.ent0_0",
"type": "protein",
"text": [
"CCT"
],
"offsets": [
[
269,
272
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6950"
},
{
"db_name": "hgnc",
"db_id": "TCP1"
},
{
"db_name": "uniprot",
"db_id": "P17987"
}
]
},
{
"id": "1.0alpha7.train.959.ent1_0",
"type": "protein-family",
"text": [
"γ-tubulin"
],
"offsets": [
[
80,
89
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002454"
}
]
},
{
"id": "1.0alpha7.train.959.ent2_1",
"type": "protein-family",
"text": [
"γ-tubulin"
],
"offsets": [
[
238,
247
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002454"
}
]
},
{
"id": "1.0alpha7.train.959.ent3_0",
"type": "protein-family",
"text": [
"prefoldin"
],
"offsets": [
[
157,
166
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR009053"
}
]
},
{
"id": "1.0alpha7.train.959.ent4_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
172,
177
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.959.ent5_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
282,
287
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.959.ent6_0",
"type": "protein-family",
"text": [
"α-tubulin"
],
"offsets": [
[
182,
191
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002452"
}
]
},
{
"id": "1.0alpha7.train.959.ent7_1",
"type": "protein-family",
"text": [
"α-tubulin"
],
"offsets": [
[
292,
301
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002452"
}
]
},
{
"id": "1.0alpha7.train.959.ent8_0",
"type": "protein-family",
"text": [
"β-"
],
"offsets": [
[
73,
75
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.959.ent9_1",
"type": "protein-family",
"text": [
"β-"
],
"offsets": [
[
231,
233
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.959.ent10_0",
"type": "protein",
"text": [
"Arp1"
],
"offsets": [
[
64,
68
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10121"
},
{
"db_name": "hgnc",
"db_id": "ACTR1A"
},
{
"db_name": "uniprot",
"db_id": "P61163"
}
]
},
{
"id": "1.0alpha7.train.959.ent11_1",
"type": "protein",
"text": [
"Arp1"
],
"offsets": [
[
222,
226
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10121"
},
{
"db_name": "hgnc",
"db_id": "ACTR1A"
},
{
"db_name": "uniprot",
"db_id": "P61163"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.959.coref0",
"entity_ids": [
"1.0alpha7.train.959.ent0_0"
]
},
{
"id": "1.0alpha7.train.959.coref1",
"entity_ids": [
"1.0alpha7.train.959.ent1_0",
"1.0alpha7.train.959.ent2_1"
]
},
{
"id": "1.0alpha7.train.959.coref2",
"entity_ids": [
"1.0alpha7.train.959.ent3_0"
]
},
{
"id": "1.0alpha7.train.959.coref3",
"entity_ids": [
"1.0alpha7.train.959.ent4_0",
"1.0alpha7.train.959.ent5_1"
]
},
{
"id": "1.0alpha7.train.959.coref4",
"entity_ids": [
"1.0alpha7.train.959.ent6_0",
"1.0alpha7.train.959.ent7_1"
]
},
{
"id": "1.0alpha7.train.959.coref5",
"entity_ids": [
"1.0alpha7.train.959.ent8_0",
"1.0alpha7.train.959.ent9_1"
]
},
{
"id": "1.0alpha7.train.959.coref6",
"entity_ids": [
"1.0alpha7.train.959.ent10_0",
"1.0alpha7.train.959.ent11_1"
]
}
] | [
{
"id": "1.0alpha7.train.959.rel0s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent10_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent10_0",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel0s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent11_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent11_1",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel1s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent8_0",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel1s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent9_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent9_1",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel2s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel2s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel3s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel3s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel4s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.959.rel4s1.0alpha7.train.959.ent0_0.o1.0alpha7.train.959.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.959.ent0_0",
"arg2_id": "1.0alpha7.train.959.ent7_1",
"normalized": []
}
] |
1.0alpha7.train.960 | 3574318 | [
{
"id": "1.0alpha7.train.960.sent",
"type": "sentence",
"text": [
"The Fyn, Src, and Crkl SH3 domains were poorly bound, whereas the Csk SH3 domain failed to bind detectable levels of EVL."
],
"offsets": [
[
0,
126
]
]
}
] | [
{
"id": "1.0alpha7.train.960.ent0_0",
"type": "protein",
"text": [
"Src"
],
"offsets": [
[
11,
14
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6714"
},
{
"db_name": "hgnc",
"db_id": "SRC"
},
{
"db_name": "uniprot",
"db_id": "P12931"
}
]
},
{
"id": "1.0alpha7.train.960.ent1_0",
"type": "protein",
"text": [
"EVL"
],
"offsets": [
[
122,
125
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "51466"
},
{
"db_name": "hgnc",
"db_id": "EVL"
}
]
},
{
"id": "1.0alpha7.train.960.ent2_0",
"type": "protein-domain",
"text": [
"Crkl SH3 domains"
],
"offsets": [
[
21,
37
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.960.ent3_0",
"type": "protein",
"text": [
"Crkl"
],
"offsets": [
[
21,
25
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1399"
},
{
"db_name": "hgnc",
"db_id": "CRKL"
},
{
"db_name": "uniprot",
"db_id": "P46109"
}
]
},
{
"id": "1.0alpha7.train.960.ent4_0",
"type": "protein",
"text": [
"Fyn"
],
"offsets": [
[
5,
8
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2534"
},
{
"db_name": "hgnc",
"db_id": "FYN"
},
{
"db_name": "uniprot",
"db_id": "P06241"
}
]
},
{
"id": "1.0alpha7.train.960.ent5_0",
"type": "protein",
"text": [
"Csk"
],
"offsets": [
[
70,
73
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1445"
},
{
"db_name": "hgnc",
"db_id": "CSK"
},
{
"db_name": "uniprot",
"db_id": "P41240"
}
]
},
{
"id": "1.0alpha7.train.960.ent6_0",
"type": "protein-domain",
"text": [
"SH3 domains"
],
"offsets": [
[
26,
37
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001452"
}
]
},
{
"id": "1.0alpha7.train.960.ent7_0",
"type": "protein-domain",
"text": [
"Csk SH3 domain"
],
"offsets": [
[
70,
84
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.960.coref0",
"entity_ids": [
"1.0alpha7.train.960.ent0_0"
]
},
{
"id": "1.0alpha7.train.960.coref1",
"entity_ids": [
"1.0alpha7.train.960.ent1_0"
]
},
{
"id": "1.0alpha7.train.960.coref2",
"entity_ids": [
"1.0alpha7.train.960.ent2_0"
]
},
{
"id": "1.0alpha7.train.960.coref3",
"entity_ids": [
"1.0alpha7.train.960.ent3_0"
]
},
{
"id": "1.0alpha7.train.960.coref4",
"entity_ids": [
"1.0alpha7.train.960.ent4_0"
]
},
{
"id": "1.0alpha7.train.960.coref5",
"entity_ids": [
"1.0alpha7.train.960.ent5_0"
]
},
{
"id": "1.0alpha7.train.960.coref6",
"entity_ids": [
"1.0alpha7.train.960.ent6_0"
]
},
{
"id": "1.0alpha7.train.960.coref7",
"entity_ids": [
"1.0alpha7.train.960.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.960.rel0s1.0alpha7.train.960.ent1_0.o1.0alpha7.train.960.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.960.ent1_0",
"arg2_id": "1.0alpha7.train.960.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.960.rel1s1.0alpha7.train.960.ent0_0.o1.0alpha7.train.960.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.960.ent0_0",
"arg2_id": "1.0alpha7.train.960.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.960.rel2s1.0alpha7.train.960.ent1_0.o1.0alpha7.train.960.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.960.ent1_0",
"arg2_id": "1.0alpha7.train.960.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.960.rel3s1.0alpha7.train.960.ent1_0.o1.0alpha7.train.960.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.960.ent1_0",
"arg2_id": "1.0alpha7.train.960.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.961 | 413199 | [
{
"id": "1.0alpha7.train.961.sent",
"type": "sentence",
"text": [
"To test the hypothesis that p150 may directly bind to DIC, we constructed affinity columns of bacterially expressed DIC."
],
"offsets": [
[
0,
127
]
]
}
] | [
{
"id": "1.0alpha7.train.961.ent0_0",
"type": "protein",
"text": [
"p150"
],
"offsets": [
[
30,
34
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10036"
},
{
"db_name": "hgnc",
"db_id": "CHAF1A"
},
{
"db_name": "uniprot",
"db_id": "Q13111"
}
]
},
{
"id": "1.0alpha7.train.961.ent1_0",
"type": "protein",
"text": [
"DIC"
],
"offsets": [
[
59,
62
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1468"
},
{
"db_name": "hgnc",
"db_id": "SLC25A10"
},
{
"db_name": "uniprot",
"db_id": "Q9UBX3"
}
]
},
{
"id": "1.0alpha7.train.961.ent2_1",
"type": "protein",
"text": [
"DIC"
],
"offsets": [
[
123,
126
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1468"
},
{
"db_name": "hgnc",
"db_id": "SLC25A10"
},
{
"db_name": "uniprot",
"db_id": "Q9UBX3"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.961.coref0",
"entity_ids": [
"1.0alpha7.train.961.ent0_0"
]
},
{
"id": "1.0alpha7.train.961.coref1",
"entity_ids": [
"1.0alpha7.train.961.ent1_0",
"1.0alpha7.train.961.ent2_1"
]
}
] | [] |
1.0alpha7.train.962 | 15507627 | [
{
"id": "1.0alpha7.train.962.sent",
"type": "sentence",
"text": [
"CI binds dCBP in yeast two-hybrid and glutathione S-transferase (GST) pull-down assays."
],
"offsets": [
[
0,
91
]
]
}
] | [
{
"id": "1.0alpha7.train.962.ent0_0",
"type": "protein",
"text": [
"dCBP"
],
"offsets": [
[
10,
14
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "M9PHB8"
}
]
},
{
"id": "1.0alpha7.train.962.ent1_0",
"type": "protein",
"text": [
"CI"
],
"offsets": [
[
0,
2
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P19538"
}
]
},
{
"id": "1.0alpha7.train.962.ent2_0",
"type": "experiment-tag",
"text": [
"glutathione S-transferase"
],
"offsets": [
[
41,
67
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.962.ent3_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
69,
72
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.962.ent4_0",
"type": "assay",
"text": [
"glutathione S-transferase (GST) pull-down assays"
],
"offsets": [
[
41,
90
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.962.coref0",
"entity_ids": [
"1.0alpha7.train.962.ent0_0"
]
},
{
"id": "1.0alpha7.train.962.coref1",
"entity_ids": [
"1.0alpha7.train.962.ent1_0"
]
},
{
"id": "1.0alpha7.train.962.coref2",
"entity_ids": [
"1.0alpha7.train.962.ent2_0",
"1.0alpha7.train.962.ent3_0"
]
},
{
"id": "1.0alpha7.train.962.coref3",
"entity_ids": [
"1.0alpha7.train.962.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.962.rel0s1.0alpha7.train.962.ent0_0.o1.0alpha7.train.962.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.962.ent0_0",
"arg2_id": "1.0alpha7.train.962.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.963 | 17606167 | [
{
"id": "1.0alpha7.train.963.sent",
"type": "sentence",
"text": [
"Transcription factors that bind to Sp1, AP1, LXR, and E-box motifs have been implicated in the transcriptional regulation of other genes involved in lipid metabolism including apolipoprotein A-II (apoA-II) (31), apolipoprotein C-III (apoC-III) (32), apolipoprotein E (apoE) (33), chicken vitellogenin II (34), fatty acid synthase (35–37), stearoyl-CoA desaturase 1 (38), the LDL receptor (39), the LDL receptor related protein (LRP) (40), CYP7a (41, 42), CETP (43), ABCG5/ABCG8 (44), ABCG1 (45), and SREBP-1c (46, 47)."
],
"offsets": [
[
0,
518
]
]
}
] | [
{
"id": "1.0alpha7.train.963.ent0_0",
"type": "gene",
"text": [
"apolipoprotein A-II"
],
"offsets": [
[
176,
195
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "336"
},
{
"db_name": "hgnc",
"db_id": "APOA2"
}
]
},
{
"id": "1.0alpha7.train.963.ent1_0",
"type": "gene",
"text": [
"apoA-II"
],
"offsets": [
[
197,
204
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "336"
},
{
"db_name": "hgnc",
"db_id": "APOA2"
}
]
},
{
"id": "1.0alpha7.train.963.ent2_0",
"type": "gene",
"text": [
"apoE"
],
"offsets": [
[
268,
272
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "348"
},
{
"db_name": "hgnc",
"db_id": "APOE"
}
]
},
{
"id": "1.0alpha7.train.963.ent3_0",
"type": "gene",
"text": [
"apolipoprotein E"
],
"offsets": [
[
250,
266
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "348"
},
{
"db_name": "hgnc",
"db_id": "APOE"
}
]
},
{
"id": "1.0alpha7.train.963.ent4_0",
"type": "gene",
"text": [
"LXR"
],
"offsets": [
[
45,
48
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.963.ent5_0",
"type": "gene",
"text": [
"apoC-III"
],
"offsets": [
[
234,
242
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "345"
},
{
"db_name": "hgnc",
"db_id": "APOC3"
}
]
},
{
"id": "1.0alpha7.train.963.ent6_0",
"type": "gene",
"text": [
"apolipoprotein C-III"
],
"offsets": [
[
212,
232
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "345"
},
{
"db_name": "hgnc",
"db_id": "APOC3"
}
]
},
{
"id": "1.0alpha7.train.963.ent7_0",
"type": "gene",
"text": [
"Sp1"
],
"offsets": [
[
35,
38
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
}
]
},
{
"id": "1.0alpha7.train.963.ent8_0",
"type": "gene",
"text": [
"AP1"
],
"offsets": [
[
40,
43
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.963.ent9_0",
"type": "gene",
"text": [
"stearoyl-CoA desaturase 1"
],
"offsets": [
[
339,
364
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6319"
},
{
"db_name": "hgnc",
"db_id": "SCD"
}
]
},
{
"id": "1.0alpha7.train.963.ent10_0",
"type": "gene",
"text": [
"ABCG5/ABCG8"
],
"offsets": [
[
466,
477
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "64240"
},
{
"db_name": "hgnc",
"db_id": "ABCG5"
}
]
},
{
"id": "1.0alpha7.train.963.ent11_0",
"type": "gene",
"text": [
"LDL receptor related protein"
],
"offsets": [
[
398,
426
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.963.ent12_0",
"type": "gene",
"text": [
"LRP"
],
"offsets": [
[
428,
431
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4035"
},
{
"db_name": "hgnc",
"db_id": "LRP1"
}
]
},
{
"id": "1.0alpha7.train.963.ent13_0",
"type": "gene",
"text": [
"SREBP-1c"
],
"offsets": [
[
500,
508
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.963.ent14_0",
"type": "DNA",
"text": [
"E-box"
],
"offsets": [
[
54,
59
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.963.ent15_0",
"type": "gene",
"text": [
"CETP"
],
"offsets": [
[
455,
459
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1071"
},
{
"db_name": "hgnc",
"db_id": "CETP"
}
]
},
{
"id": "1.0alpha7.train.963.ent16_0",
"type": "gene",
"text": [
"chicken vitellogenin II"
],
"offsets": [
[
280,
303
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.963.ent17_0",
"type": "gene",
"text": [
"CYP7a"
],
"offsets": [
[
439,
444
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1581"
},
{
"db_name": "hgnc",
"db_id": "CYP7A1"
}
]
},
{
"id": "1.0alpha7.train.963.ent18_0",
"type": "gene",
"text": [
"ABCG1"
],
"offsets": [
[
484,
489
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9619"
},
{
"db_name": "hgnc",
"db_id": "ABCG1"
}
]
},
{
"id": "1.0alpha7.train.963.ent19_0",
"type": "gene",
"text": [
"LDL receptor"
],
"offsets": [
[
375,
387
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3949"
},
{
"db_name": "hgnc",
"db_id": "LDLR"
}
]
},
{
"id": "1.0alpha7.train.963.ent20_1",
"type": "gene",
"text": [
"LDL receptor"
],
"offsets": [
[
398,
410
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3949"
},
{
"db_name": "hgnc",
"db_id": "LDLR"
}
]
},
{
"id": "1.0alpha7.train.963.ent21_0",
"type": "gene",
"text": [
"fatty acid synthase"
],
"offsets": [
[
310,
329
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2194"
},
{
"db_name": "hgnc",
"db_id": "FASN"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.963.coref0",
"entity_ids": [
"1.0alpha7.train.963.ent0_0",
"1.0alpha7.train.963.ent1_0"
]
},
{
"id": "1.0alpha7.train.963.coref1",
"entity_ids": [
"1.0alpha7.train.963.ent2_0",
"1.0alpha7.train.963.ent3_0"
]
},
{
"id": "1.0alpha7.train.963.coref2",
"entity_ids": [
"1.0alpha7.train.963.ent4_0"
]
},
{
"id": "1.0alpha7.train.963.coref3",
"entity_ids": [
"1.0alpha7.train.963.ent5_0",
"1.0alpha7.train.963.ent6_0"
]
},
{
"id": "1.0alpha7.train.963.coref4",
"entity_ids": [
"1.0alpha7.train.963.ent7_0"
]
},
{
"id": "1.0alpha7.train.963.coref5",
"entity_ids": [
"1.0alpha7.train.963.ent8_0"
]
},
{
"id": "1.0alpha7.train.963.coref6",
"entity_ids": [
"1.0alpha7.train.963.ent9_0"
]
},
{
"id": "1.0alpha7.train.963.coref7",
"entity_ids": [
"1.0alpha7.train.963.ent10_0"
]
},
{
"id": "1.0alpha7.train.963.coref8",
"entity_ids": [
"1.0alpha7.train.963.ent11_0"
]
},
{
"id": "1.0alpha7.train.963.coref9",
"entity_ids": [
"1.0alpha7.train.963.ent12_0"
]
},
{
"id": "1.0alpha7.train.963.coref10",
"entity_ids": [
"1.0alpha7.train.963.ent13_0"
]
},
{
"id": "1.0alpha7.train.963.coref11",
"entity_ids": [
"1.0alpha7.train.963.ent14_0"
]
},
{
"id": "1.0alpha7.train.963.coref12",
"entity_ids": [
"1.0alpha7.train.963.ent15_0"
]
},
{
"id": "1.0alpha7.train.963.coref13",
"entity_ids": [
"1.0alpha7.train.963.ent16_0"
]
},
{
"id": "1.0alpha7.train.963.coref14",
"entity_ids": [
"1.0alpha7.train.963.ent17_0"
]
},
{
"id": "1.0alpha7.train.963.coref15",
"entity_ids": [
"1.0alpha7.train.963.ent18_0"
]
},
{
"id": "1.0alpha7.train.963.coref16",
"entity_ids": [
"1.0alpha7.train.963.ent19_0",
"1.0alpha7.train.963.ent20_1"
]
},
{
"id": "1.0alpha7.train.963.coref17",
"entity_ids": [
"1.0alpha7.train.963.ent21_0"
]
}
] | [] |
1.0alpha7.train.964 | 9486213 | [
{
"id": "1.0alpha7.train.964.sent",
"type": "sentence",
"text": [
"We are currently testing if this motif is required for the binding of cortactin to the Arp2/3 complex."
],
"offsets": [
[
0,
104
]
]
}
] | [
{
"id": "1.0alpha7.train.964.ent0_0",
"type": "protein",
"text": [
"3"
],
"offsets": [
[
94,
95
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10096"
},
{
"db_name": "hgnc",
"db_id": "ACTR3"
},
{
"db_name": "uniprot",
"db_id": "P61158"
}
]
},
{
"id": "1.0alpha7.train.964.ent1_0",
"type": "protein",
"text": [
"Arp2"
],
"offsets": [
[
89,
93
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.964.ent2_0",
"type": "protein",
"text": [
"cortactin"
],
"offsets": [
[
71,
80
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2017"
},
{
"db_name": "hgnc",
"db_id": "CTTN"
},
{
"db_name": "uniprot",
"db_id": "Q14247"
}
]
},
{
"id": "1.0alpha7.train.964.ent3_0",
"type": "protein-complex",
"text": [
"Arp2/3 complex"
],
"offsets": [
[
89,
103
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.964.coref0",
"entity_ids": [
"1.0alpha7.train.964.ent0_0"
]
},
{
"id": "1.0alpha7.train.964.coref1",
"entity_ids": [
"1.0alpha7.train.964.ent1_0"
]
},
{
"id": "1.0alpha7.train.964.coref2",
"entity_ids": [
"1.0alpha7.train.964.ent2_0"
]
},
{
"id": "1.0alpha7.train.964.coref3",
"entity_ids": [
"1.0alpha7.train.964.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.964.rel0s1.0alpha7.train.964.ent0_0.o1.0alpha7.train.964.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.964.ent0_0",
"arg2_id": "1.0alpha7.train.964.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.964.rel1s1.0alpha7.train.964.ent2_0.o1.0alpha7.train.964.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.964.ent2_0",
"arg2_id": "1.0alpha7.train.964.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.965 | 2294781 | [
{
"id": "1.0alpha7.train.965.sent",
"type": "sentence",
"text": [
"As depicted in Fig. 6, preadipocyte differentiation correlated with PPARgamma binding affinity; AD-5075 and the Merck agonists, L-796449, L-783483, and L-165461, produced robust preadipocyte differentiation."
],
"offsets": [
[
0,
209
]
]
}
] | [
{
"id": "1.0alpha7.train.965.ent0_0",
"type": "protein",
"text": [
"PPARgamma"
],
"offsets": [
[
70,
79
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5468"
},
{
"db_name": "hgnc",
"db_id": "PPARG"
},
{
"db_name": "uniprot",
"db_id": "P37231"
}
]
},
{
"id": "1.0alpha7.train.965.ent1_0",
"type": "chemical",
"text": [
"L-796449"
],
"offsets": [
[
130,
138
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "9891946"
}
]
},
{
"id": "1.0alpha7.train.965.ent2_0",
"type": "chemical",
"text": [
"L-783483"
],
"offsets": [
[
140,
148
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "9935197"
}
]
},
{
"id": "1.0alpha7.train.965.ent3_0",
"type": "brand",
"text": [
"Merck"
],
"offsets": [
[
114,
119
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.965.ent4_0",
"type": "chemical",
"text": [
"AD-5075"
],
"offsets": [
[
98,
105
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "128440"
}
]
},
{
"id": "1.0alpha7.train.965.ent5_0",
"type": "chemical",
"text": [
"Merck agonists"
],
"offsets": [
[
114,
128
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.965.ent6_0",
"type": "chemical",
"text": [
"L-165461"
],
"offsets": [
[
154,
162
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "9889841"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.965.coref0",
"entity_ids": [
"1.0alpha7.train.965.ent0_0"
]
},
{
"id": "1.0alpha7.train.965.coref1",
"entity_ids": [
"1.0alpha7.train.965.ent1_0"
]
},
{
"id": "1.0alpha7.train.965.coref2",
"entity_ids": [
"1.0alpha7.train.965.ent2_0"
]
},
{
"id": "1.0alpha7.train.965.coref3",
"entity_ids": [
"1.0alpha7.train.965.ent3_0"
]
},
{
"id": "1.0alpha7.train.965.coref4",
"entity_ids": [
"1.0alpha7.train.965.ent4_0"
]
},
{
"id": "1.0alpha7.train.965.coref5",
"entity_ids": [
"1.0alpha7.train.965.ent5_0"
]
},
{
"id": "1.0alpha7.train.965.coref6",
"entity_ids": [
"1.0alpha7.train.965.ent6_0"
]
}
] | [] |
1.0alpha7.train.966 | 15140560 | [
{
"id": "1.0alpha7.train.966.sent",
"type": "sentence",
"text": [
"Inhibition of transcription from constructs such as U-2, U-1, D+6, and D+8 could simply be due to inhibition of the binding of the TBP subunit of TFIID (Fig. 6A and B)."
],
"offsets": [
[
0,
174
]
]
}
] | [
{
"id": "1.0alpha7.train.966.ent0_0",
"type": "experimental-construct",
"text": [
"D+6"
],
"offsets": [
[
64,
67
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.966.ent1_0",
"type": "experimental-construct",
"text": [
"U-1"
],
"offsets": [
[
59,
62
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.966.ent2_0",
"type": "experimental-construct",
"text": [
"U-2"
],
"offsets": [
[
53,
56
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.966.ent3_0",
"type": "protein",
"text": [
"TBP"
],
"offsets": [
[
134,
137
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.966.ent4_0",
"type": "experimental-construct",
"text": [
"D+8"
],
"offsets": [
[
73,
76
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.966.ent5_0",
"type": "protein",
"text": [
"TFIID"
],
"offsets": [
[
150,
155
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.966.coref0",
"entity_ids": [
"1.0alpha7.train.966.ent0_0"
]
},
{
"id": "1.0alpha7.train.966.coref1",
"entity_ids": [
"1.0alpha7.train.966.ent1_0"
]
},
{
"id": "1.0alpha7.train.966.coref2",
"entity_ids": [
"1.0alpha7.train.966.ent2_0"
]
},
{
"id": "1.0alpha7.train.966.coref3",
"entity_ids": [
"1.0alpha7.train.966.ent3_0"
]
},
{
"id": "1.0alpha7.train.966.coref4",
"entity_ids": [
"1.0alpha7.train.966.ent4_0"
]
},
{
"id": "1.0alpha7.train.966.coref5",
"entity_ids": [
"1.0alpha7.train.966.ent5_0"
]
}
] | [] |
1.0alpha7.train.967 | 19651181 | [
{
"id": "1.0alpha7.train.967.sent",
"type": "sentence",
"text": [
"Similarly, DLG binds both FAS2 and Shaker K+ channels, and is responsible for their synaptic localization at the Drosophila glutamatergic NMJ (Tejedor et al., 1997 ; Thomas et al., 1997 ; Zito et al., 1997 )."
],
"offsets": [
[
0,
215
]
]
}
] | [
{
"id": "1.0alpha7.train.967.ent0_0",
"type": "protein",
"text": [
"FAS2"
],
"offsets": [
[
28,
32
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.967.ent1_0",
"type": "protein-complex",
"text": [
"Shaker K+ channels"
],
"offsets": [
[
37,
55
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.967.ent2_0",
"type": "protein",
"text": [
"DLG"
],
"offsets": [
[
12,
15
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1739"
},
{
"db_name": "hgnc",
"db_id": "DLG1"
},
{
"db_name": "uniprot",
"db_id": "Q12959"
}
]
},
{
"id": "1.0alpha7.train.967.ent3_0",
"type": "organelle",
"text": [
"NMJ"
],
"offsets": [
[
142,
145
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.967.coref0",
"entity_ids": [
"1.0alpha7.train.967.ent0_0"
]
},
{
"id": "1.0alpha7.train.967.coref1",
"entity_ids": [
"1.0alpha7.train.967.ent1_0"
]
},
{
"id": "1.0alpha7.train.967.coref2",
"entity_ids": [
"1.0alpha7.train.967.ent2_0"
]
},
{
"id": "1.0alpha7.train.967.coref3",
"entity_ids": [
"1.0alpha7.train.967.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.967.rel0s1.0alpha7.train.967.ent0_0.o1.0alpha7.train.967.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.967.ent0_0",
"arg2_id": "1.0alpha7.train.967.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.967.rel1s1.0alpha7.train.967.ent1_0.o1.0alpha7.train.967.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.967.ent1_0",
"arg2_id": "1.0alpha7.train.967.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.968 | 11558173 | [
{
"id": "1.0alpha7.train.968.sent",
"type": "sentence",
"text": [
"( A) In our model, based on the docking shown in Figure 3, these interactions remain conserved for both heads in ncd dimers bound to MTs in the absence of nucleotide."
],
"offsets": [
[
0,
169
]
]
}
] | [
{
"id": "1.0alpha7.train.968.ent0_0",
"type": "organelle",
"text": [
"MTs"
],
"offsets": [
[
136,
139
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.968.ent1_0",
"type": "protein-complex",
"text": [
"ncd dimers"
],
"offsets": [
[
115,
125
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.968.coref0",
"entity_ids": [
"1.0alpha7.train.968.ent0_0"
]
},
{
"id": "1.0alpha7.train.968.coref1",
"entity_ids": [
"1.0alpha7.train.968.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.968.rel0s1.0alpha7.train.968.ent0_0.o1.0alpha7.train.968.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.968.ent0_0",
"arg2_id": "1.0alpha7.train.968.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.969 | 12455185 | [
{
"id": "1.0alpha7.train.969.sent",
"type": "sentence",
"text": [
"The fact that GCN2-S577A also dampened the derepression response to 3AT agrees with the idea that this mutation enhances tRNA binding by GCN2, reducing the dependence of kinase activation on elevated levels of uncharged tRNA in amino acid-starved cells."
],
"offsets": [
[
0,
253
]
]
}
] | [
{
"id": "1.0alpha7.train.969.ent0_0",
"type": "protein",
"text": [
"GCN2-S577A"
],
"offsets": [
[
14,
24
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.969.ent1_0",
"type": "RNA",
"text": [
"tRNA"
],
"offsets": [
[
121,
125
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.969.ent2_1",
"type": "RNA",
"text": [
"tRNA"
],
"offsets": [
[
220,
224
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.969.ent3_0",
"type": "protein",
"text": [
"GCN2"
],
"offsets": [
[
14,
18
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "440275"
},
{
"db_name": "hgnc",
"db_id": "EIF2AK4"
},
{
"db_name": "uniprot",
"db_id": "Q9P2K8"
}
]
},
{
"id": "1.0alpha7.train.969.ent4_1",
"type": "protein",
"text": [
"GCN2"
],
"offsets": [
[
137,
141
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "440275"
},
{
"db_name": "hgnc",
"db_id": "EIF2AK4"
},
{
"db_name": "uniprot",
"db_id": "Q9P2K8"
}
]
},
{
"id": "1.0alpha7.train.969.ent5_0",
"type": "chemical",
"text": [
"3AT"
],
"offsets": [
[
68,
71
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.969.coref0",
"entity_ids": [
"1.0alpha7.train.969.ent0_0"
]
},
{
"id": "1.0alpha7.train.969.coref1",
"entity_ids": [
"1.0alpha7.train.969.ent1_0",
"1.0alpha7.train.969.ent2_1"
]
},
{
"id": "1.0alpha7.train.969.coref2",
"entity_ids": [
"1.0alpha7.train.969.ent3_0",
"1.0alpha7.train.969.ent4_1"
]
},
{
"id": "1.0alpha7.train.969.coref3",
"entity_ids": [
"1.0alpha7.train.969.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.969.rel0s1.0alpha7.train.969.ent1_0.o1.0alpha7.train.969.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.969.ent1_0",
"arg2_id": "1.0alpha7.train.969.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.969.rel0s1.0alpha7.train.969.ent1_0.o1.0alpha7.train.969.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.969.ent1_0",
"arg2_id": "1.0alpha7.train.969.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.969.rel0s1.0alpha7.train.969.ent2_1.o1.0alpha7.train.969.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.969.ent2_1",
"arg2_id": "1.0alpha7.train.969.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.969.rel0s1.0alpha7.train.969.ent2_1.o1.0alpha7.train.969.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.969.ent2_1",
"arg2_id": "1.0alpha7.train.969.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.969.rel1s1.0alpha7.train.969.ent0_0.o1.0alpha7.train.969.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.969.ent0_0",
"arg2_id": "1.0alpha7.train.969.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.969.rel1s1.0alpha7.train.969.ent0_0.o1.0alpha7.train.969.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.969.ent0_0",
"arg2_id": "1.0alpha7.train.969.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.970 | 2826285 | [
{
"id": "1.0alpha7.train.970.sent",
"type": "sentence",
"text": [
"Treatment with a phospholipid known to decrease self-association of ERMs enhances the binding of merlin isoform 1 to NHE-RF."
],
"offsets": [
[
0,
127
]
]
}
] | [
{
"id": "1.0alpha7.train.970.ent0_0",
"type": "protein-family",
"text": [
"ERMs"
],
"offsets": [
[
69,
73
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR011174"
}
]
},
{
"id": "1.0alpha7.train.970.ent1_0",
"type": "protein",
"text": [
"NHE-RF"
],
"offsets": [
[
120,
126
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9368"
},
{
"db_name": "hgnc",
"db_id": "SLC9A3R1"
},
{
"db_name": "uniprot",
"db_id": "O14745"
}
]
},
{
"id": "1.0alpha7.train.970.ent2_0",
"type": "chemical",
"text": [
"phospholipid"
],
"offsets": [
[
17,
29
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.970.ent3_0",
"type": "protein",
"text": [
"merlin"
],
"offsets": [
[
99,
105
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4771"
},
{
"db_name": "hgnc",
"db_id": "NF2"
},
{
"db_name": "uniprot",
"db_id": "P35240"
}
]
},
{
"id": "1.0alpha7.train.970.ent4_0",
"type": "protein-isoform",
"text": [
"merlin isoform 1"
],
"offsets": [
[
99,
115
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.970.coref0",
"entity_ids": [
"1.0alpha7.train.970.ent0_0"
]
},
{
"id": "1.0alpha7.train.970.coref1",
"entity_ids": [
"1.0alpha7.train.970.ent1_0"
]
},
{
"id": "1.0alpha7.train.970.coref2",
"entity_ids": [
"1.0alpha7.train.970.ent2_0"
]
},
{
"id": "1.0alpha7.train.970.coref3",
"entity_ids": [
"1.0alpha7.train.970.ent3_0"
]
},
{
"id": "1.0alpha7.train.970.coref4",
"entity_ids": [
"1.0alpha7.train.970.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.970.rel0s1.0alpha7.train.970.ent1_0.o1.0alpha7.train.970.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.970.ent1_0",
"arg2_id": "1.0alpha7.train.970.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.970.rel1s1.0alpha7.train.970.ent1_0.o1.0alpha7.train.970.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.970.ent1_0",
"arg2_id": "1.0alpha7.train.970.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.971 | 2892423 | [
{
"id": "1.0alpha7.train.971.sent",
"type": "sentence",
"text": [
"FKBP52 binds directly to the GR ."
],
"offsets": [
[
0,
35
]
]
}
] | [
{
"id": "1.0alpha7.train.971.ent0_0",
"type": "protein",
"text": [
"FKBP52"
],
"offsets": [
[
0,
6
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2288"
},
{
"db_name": "hgnc",
"db_id": "FKBP4"
}
]
},
{
"id": "1.0alpha7.train.971.ent1_0",
"type": "protein",
"text": [
"GR"
],
"offsets": [
[
31,
33
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2908"
},
{
"db_name": "hgnc",
"db_id": "NR3C1"
},
{
"db_name": "uniprot",
"db_id": "P04150"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.971.coref0",
"entity_ids": [
"1.0alpha7.train.971.ent0_0"
]
},
{
"id": "1.0alpha7.train.971.coref1",
"entity_ids": [
"1.0alpha7.train.971.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.971.rel0s1.0alpha7.train.971.ent0_0.o1.0alpha7.train.971.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.971.ent0_0",
"arg2_id": "1.0alpha7.train.971.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.972 | 3472873 | [
{
"id": "1.0alpha7.train.972.sent",
"type": "sentence",
"text": [
"c), the effect of different amounts of D315A procaspase-9 ( DA.Caspase-9) on dATP binding to Apaf-1 was measured."
],
"offsets": [
[
0,
116
]
]
}
] | [
{
"id": "1.0alpha7.train.972.ent0_0",
"type": "protein",
"text": [
"procaspase-9"
],
"offsets": [
[
46,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "842"
},
{
"db_name": "hgnc",
"db_id": "CASP9"
},
{
"db_name": "uniprot",
"db_id": "P55211"
}
]
},
{
"id": "1.0alpha7.train.972.ent1_0",
"type": "protein",
"text": [
"Apaf-1"
],
"offsets": [
[
96,
102
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "317"
},
{
"db_name": "hgnc",
"db_id": "APAF1"
},
{
"db_name": "uniprot",
"db_id": "O14727"
}
]
},
{
"id": "1.0alpha7.train.972.ent2_0",
"type": "protein",
"text": [
"D315A procaspase-9"
],
"offsets": [
[
40,
58
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.972.ent3_0",
"type": "protein",
"text": [
"DA.Caspase-9"
],
"offsets": [
[
61,
73
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.972.ent4_0",
"type": "chemical",
"text": [
"dATP"
],
"offsets": [
[
79,
83
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "15993"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.972.coref0",
"entity_ids": [
"1.0alpha7.train.972.ent0_0"
]
},
{
"id": "1.0alpha7.train.972.coref1",
"entity_ids": [
"1.0alpha7.train.972.ent1_0"
]
},
{
"id": "1.0alpha7.train.972.coref2",
"entity_ids": [
"1.0alpha7.train.972.ent2_0",
"1.0alpha7.train.972.ent3_0"
]
},
{
"id": "1.0alpha7.train.972.coref3",
"entity_ids": [
"1.0alpha7.train.972.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.972.rel0s1.0alpha7.train.972.ent1_0.o1.0alpha7.train.972.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.972.ent1_0",
"arg2_id": "1.0alpha7.train.972.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.973 | 15956096 | [
{
"id": "1.0alpha7.train.973.sent",
"type": "sentence",
"text": [
"The concurrent binding of c-Myb and Ets-1 by CBP/ p300 may also explain other attributes of the Gag-Myb-Ets fusion protein."
],
"offsets": [
[
0,
127
]
]
}
] | [
{
"id": "1.0alpha7.train.973.ent0_0",
"type": "protein-family",
"text": [
"CBP/ p300"
],
"offsets": [
[
48,
57
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR038547"
}
]
},
{
"id": "1.0alpha7.train.973.ent1_0",
"type": "experimental-construct",
"text": [
"Gag-Myb-Ets fusion protein"
],
"offsets": [
[
100,
126
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.973.ent2_0",
"type": "protein",
"text": [
"c-Myb"
],
"offsets": [
[
27,
32
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4602"
},
{
"db_name": "hgnc",
"db_id": "MYB"
},
{
"db_name": "uniprot",
"db_id": "P10242"
}
]
},
{
"id": "1.0alpha7.train.973.ent3_0",
"type": "protein",
"text": [
"CBP"
],
"offsets": [
[
48,
51
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1387"
},
{
"db_name": "hgnc",
"db_id": "CREBBP"
},
{
"db_name": "uniprot",
"db_id": "Q92793"
}
]
},
{
"id": "1.0alpha7.train.973.ent4_0",
"type": "protein",
"text": [
"Ets-1"
],
"offsets": [
[
38,
43
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2113"
},
{
"db_name": "hgnc",
"db_id": "ETS1"
},
{
"db_name": "uniprot",
"db_id": "P14921"
}
]
},
{
"id": "1.0alpha7.train.973.ent5_0",
"type": "protein",
"text": [
"p300"
],
"offsets": [
[
53,
57
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2033"
},
{
"db_name": "hgnc",
"db_id": "EP300"
},
{
"db_name": "uniprot",
"db_id": "Q09472"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.973.coref0",
"entity_ids": [
"1.0alpha7.train.973.ent0_0"
]
},
{
"id": "1.0alpha7.train.973.coref1",
"entity_ids": [
"1.0alpha7.train.973.ent1_0"
]
},
{
"id": "1.0alpha7.train.973.coref2",
"entity_ids": [
"1.0alpha7.train.973.ent2_0"
]
},
{
"id": "1.0alpha7.train.973.coref3",
"entity_ids": [
"1.0alpha7.train.973.ent3_0"
]
},
{
"id": "1.0alpha7.train.973.coref4",
"entity_ids": [
"1.0alpha7.train.973.ent4_0"
]
},
{
"id": "1.0alpha7.train.973.coref5",
"entity_ids": [
"1.0alpha7.train.973.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.973.rel0s1.0alpha7.train.973.ent0_0.o1.0alpha7.train.973.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.973.ent0_0",
"arg2_id": "1.0alpha7.train.973.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.973.rel1s1.0alpha7.train.973.ent0_0.o1.0alpha7.train.973.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.973.ent0_0",
"arg2_id": "1.0alpha7.train.973.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.974 | 5162116 | [
{
"id": "1.0alpha7.train.974.sent",
"type": "sentence",
"text": [
"However, the amount of associated Hsp70 was significantly reduced in cells co-expressing the region of PKC that binds Hsp70 (GST-CTS660A; lane 2) and abolished in cells co-expressing the region of Hsp70 that binds PKC (GST-PBCT; lane 3)."
],
"offsets": [
[
0,
244
]
]
}
] | [
{
"id": "1.0alpha7.train.974.ent0_0",
"type": "experimental-construct",
"text": [
"GST-PBCT"
],
"offsets": [
[
225,
233
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.974.ent1_0",
"type": "protein-family",
"text": [
"Hsp70"
],
"offsets": [
[
35,
40
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR013126"
}
]
},
{
"id": "1.0alpha7.train.974.ent2_1",
"type": "protein-family",
"text": [
"Hsp70"
],
"offsets": [
[
121,
126
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR013126"
}
]
},
{
"id": "1.0alpha7.train.974.ent3_2",
"type": "protein-family",
"text": [
"Hsp70"
],
"offsets": [
[
202,
207
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR013126"
}
]
},
{
"id": "1.0alpha7.train.974.ent4_0",
"type": "experimental-construct",
"text": [
"GST-CTS660A"
],
"offsets": [
[
128,
139
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.974.ent5_0",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
105,
108
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014376"
}
]
},
{
"id": "1.0alpha7.train.974.ent6_1",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
220,
223
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014376"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.974.coref0",
"entity_ids": [
"1.0alpha7.train.974.ent0_0"
]
},
{
"id": "1.0alpha7.train.974.coref1",
"entity_ids": [
"1.0alpha7.train.974.ent1_0",
"1.0alpha7.train.974.ent2_1",
"1.0alpha7.train.974.ent3_2"
]
},
{
"id": "1.0alpha7.train.974.coref2",
"entity_ids": [
"1.0alpha7.train.974.ent4_0"
]
},
{
"id": "1.0alpha7.train.974.coref3",
"entity_ids": [
"1.0alpha7.train.974.ent5_0",
"1.0alpha7.train.974.ent6_1"
]
}
] | [
{
"id": "1.0alpha7.train.974.rel0s1.0alpha7.train.974.ent1_0.o1.0alpha7.train.974.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.974.ent1_0",
"arg2_id": "1.0alpha7.train.974.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.974.rel0s1.0alpha7.train.974.ent1_0.o1.0alpha7.train.974.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.974.ent1_0",
"arg2_id": "1.0alpha7.train.974.ent6_1",
"normalized": []
},
{
"id": "1.0alpha7.train.974.rel0s1.0alpha7.train.974.ent2_1.o1.0alpha7.train.974.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.974.ent2_1",
"arg2_id": "1.0alpha7.train.974.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.974.rel0s1.0alpha7.train.974.ent2_1.o1.0alpha7.train.974.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.974.ent2_1",
"arg2_id": "1.0alpha7.train.974.ent6_1",
"normalized": []
},
{
"id": "1.0alpha7.train.974.rel0s1.0alpha7.train.974.ent3_2.o1.0alpha7.train.974.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.974.ent3_2",
"arg2_id": "1.0alpha7.train.974.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.974.rel0s1.0alpha7.train.974.ent3_2.o1.0alpha7.train.974.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.974.ent3_2",
"arg2_id": "1.0alpha7.train.974.ent6_1",
"normalized": []
}
] |
1.0alpha7.train.975 | 18977546 | [
{
"id": "1.0alpha7.train.975.sent",
"type": "sentence",
"text": [
"CSR binding to B element RNA containing the 1750 mutation."
],
"offsets": [
[
0,
59
]
]
}
] | [
{
"id": "1.0alpha7.train.975.ent0_0",
"type": "RNA",
"text": [
"B element"
],
"offsets": [
[
16,
25
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.975.ent1_0",
"type": "protein",
"text": [
"CSR"
],
"offsets": [
[
0,
3
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "51435"
},
{
"db_name": "hgnc",
"db_id": "SCARA3"
},
{
"db_name": "uniprot",
"db_id": "Q6AZY7"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.975.coref0",
"entity_ids": [
"1.0alpha7.train.975.ent0_0"
]
},
{
"id": "1.0alpha7.train.975.coref1",
"entity_ids": [
"1.0alpha7.train.975.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.975.rel0s1.0alpha7.train.975.ent0_0.o1.0alpha7.train.975.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.975.ent0_0",
"arg2_id": "1.0alpha7.train.975.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.976 | 22637695 | [
{
"id": "1.0alpha7.train.976.sent",
"type": "sentence",
"text": [
"This analysis revealed specific in vivo binding of NFAT5 to the TNFα proximal promoter and the aldose reductase enhancer in response to hypertonic stimulation, either alone or in combination with PMA (Figure 6D, right, top and middle panels, lanes 5 and 6)."
],
"offsets": [
[
0,
257
]
]
}
] | [
{
"id": "1.0alpha7.train.976.ent0_0",
"type": "protein",
"text": [
"NFAT5"
],
"offsets": [
[
51,
56
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10725"
},
{
"db_name": "hgnc",
"db_id": "NFAT5"
},
{
"db_name": "uniprot",
"db_id": "H3BP21"
}
]
},
{
"id": "1.0alpha7.train.976.ent1_0",
"type": "DNA",
"text": [
"TNFα proximal promoter"
],
"offsets": [
[
64,
86
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.976.ent2_0",
"type": "DNA",
"text": [
"aldose reductase enhancer"
],
"offsets": [
[
95,
120
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.976.ent3_0",
"type": "chemical",
"text": [
"PMA"
],
"offsets": [
[
196,
199
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "134692534"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.976.coref0",
"entity_ids": [
"1.0alpha7.train.976.ent0_0"
]
},
{
"id": "1.0alpha7.train.976.coref1",
"entity_ids": [
"1.0alpha7.train.976.ent1_0"
]
},
{
"id": "1.0alpha7.train.976.coref2",
"entity_ids": [
"1.0alpha7.train.976.ent2_0"
]
},
{
"id": "1.0alpha7.train.976.coref3",
"entity_ids": [
"1.0alpha7.train.976.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.976.rel0s1.0alpha7.train.976.ent0_0.o1.0alpha7.train.976.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.976.ent0_0",
"arg2_id": "1.0alpha7.train.976.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.976.rel1s1.0alpha7.train.976.ent0_0.o1.0alpha7.train.976.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.976.ent0_0",
"arg2_id": "1.0alpha7.train.976.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.977 | 1302018 | [
{
"id": "1.0alpha7.train.977.sent",
"type": "sentence",
"text": [
"In G0 phase, this activity would then be repressed by Rb (or other pocket proteins) bound to E2F."
],
"offsets": [
[
0,
100
]
]
}
] | [
{
"id": "1.0alpha7.train.977.ent0_0",
"type": "protein-complex",
"text": [
"E2F"
],
"offsets": [
[
96,
99
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.977.ent1_0",
"type": "protein",
"text": [
"Rb"
],
"offsets": [
[
55,
57
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5925"
},
{
"db_name": "hgnc",
"db_id": "RB1"
},
{
"db_name": "uniprot",
"db_id": "P06400"
}
]
},
{
"id": "1.0alpha7.train.977.ent2_0",
"type": "process",
"text": [
"G0"
],
"offsets": [
[
3,
5
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.977.coref0",
"entity_ids": [
"1.0alpha7.train.977.ent0_0"
]
},
{
"id": "1.0alpha7.train.977.coref1",
"entity_ids": [
"1.0alpha7.train.977.ent1_0"
]
},
{
"id": "1.0alpha7.train.977.coref2",
"entity_ids": [
"1.0alpha7.train.977.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.977.rel0s1.0alpha7.train.977.ent0_0.o1.0alpha7.train.977.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.977.ent0_0",
"arg2_id": "1.0alpha7.train.977.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.978 | 25093092 | [
{
"id": "1.0alpha7.train.978.sent",
"type": "sentence",
"text": [
"B. M. Bradt, T. S. Bixby, W. P. Kolb and N. R. Cooper, Covalent binding of Alzheimer's disease A peptide with C3 via activation of both complement pathways."
],
"offsets": [
[
0,
159
]
]
}
] | [
{
"id": "1.0alpha7.train.978.ent0_0",
"type": "protein",
"text": [
"C3"
],
"offsets": [
[
113,
115
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "718"
},
{
"db_name": "hgnc",
"db_id": "C3"
},
{
"db_name": "uniprot",
"db_id": "P01024"
}
]
},
{
"id": "1.0alpha7.train.978.ent1_0",
"type": "peptide",
"text": [
"Alzheimer's disease A peptide"
],
"offsets": [
[
76,
106
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.978.coref0",
"entity_ids": [
"1.0alpha7.train.978.ent0_0"
]
},
{
"id": "1.0alpha7.train.978.coref1",
"entity_ids": [
"1.0alpha7.train.978.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.978.rel0s1.0alpha7.train.978.ent0_0.o1.0alpha7.train.978.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.978.ent0_0",
"arg2_id": "1.0alpha7.train.978.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.979 | 4757819 | [
{
"id": "1.0alpha7.train.979.sent",
"type": "sentence",
"text": [
"We show that activation of the BMP-signaling pathway results in increased binding of Smad1 to the GC region from the Id1 BMP response element."
],
"offsets": [
[
0,
147
]
]
}
] | [
{
"id": "1.0alpha7.train.979.ent0_0",
"type": "DNA",
"text": [
"GC region"
],
"offsets": [
[
101,
110
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.979.ent1_0",
"type": "process",
"text": [
"BMP-signaling pathway"
],
"offsets": [
[
32,
53
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.979.ent2_0",
"type": "DNA",
"text": [
"Id1 BMP response element"
],
"offsets": [
[
122,
146
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.979.ent3_0",
"type": "protein",
"text": [
"Smad1"
],
"offsets": [
[
87,
92
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4086"
},
{
"db_name": "hgnc",
"db_id": "SMAD1"
},
{
"db_name": "uniprot",
"db_id": "Q15797"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.979.coref0",
"entity_ids": [
"1.0alpha7.train.979.ent0_0"
]
},
{
"id": "1.0alpha7.train.979.coref1",
"entity_ids": [
"1.0alpha7.train.979.ent1_0"
]
},
{
"id": "1.0alpha7.train.979.coref2",
"entity_ids": [
"1.0alpha7.train.979.ent2_0"
]
},
{
"id": "1.0alpha7.train.979.coref3",
"entity_ids": [
"1.0alpha7.train.979.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.979.rel0s1.0alpha7.train.979.ent0_0.o1.0alpha7.train.979.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.979.ent0_0",
"arg2_id": "1.0alpha7.train.979.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.979.rel1s1.0alpha7.train.979.ent2_0.o1.0alpha7.train.979.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.979.ent2_0",
"arg2_id": "1.0alpha7.train.979.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.980 | 19604014 | [
{
"id": "1.0alpha7.train.980.sent",
"type": "sentence",
"text": [
"While all the GAL4 markers failed to drive expression in the core of the peduncle and lobes, we found that phalloidin, which binds filamentous actin, heavily stained the core (Fig. 6A)."
],
"offsets": [
[
0,
185
]
]
}
] | [
{
"id": "1.0alpha7.train.980.ent0_0",
"type": "protein",
"text": [
"GAL4"
],
"offsets": [
[
14,
18
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P04386"
}
]
},
{
"id": "1.0alpha7.train.980.ent1_0",
"type": "protein",
"text": [
"filamentous actin"
],
"offsets": [
[
131,
148
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.980.ent2_0",
"type": "chemical",
"text": [
"phalloidin"
],
"offsets": [
[
107,
117
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "4752"
}
]
},
{
"id": "1.0alpha7.train.980.ent3_0",
"type": "protein",
"text": [
"actin"
],
"offsets": [
[
143,
148
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.980.coref0",
"entity_ids": [
"1.0alpha7.train.980.ent0_0"
]
},
{
"id": "1.0alpha7.train.980.coref1",
"entity_ids": [
"1.0alpha7.train.980.ent1_0"
]
},
{
"id": "1.0alpha7.train.980.coref2",
"entity_ids": [
"1.0alpha7.train.980.ent2_0"
]
},
{
"id": "1.0alpha7.train.980.coref3",
"entity_ids": [
"1.0alpha7.train.980.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.980.rel0s1.0alpha7.train.980.ent1_0.o1.0alpha7.train.980.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.980.ent1_0",
"arg2_id": "1.0alpha7.train.980.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.980.rel1s1.0alpha7.train.980.ent2_0.o1.0alpha7.train.980.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.980.ent2_0",
"arg2_id": "1.0alpha7.train.980.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.981 | 1891168 | [
{
"id": "1.0alpha7.train.981.sent",
"type": "sentence",
"text": [
"C, C-ERMAD displaces EBP50 bound to Ez-(1-296) beads, but not vice versa."
],
"offsets": [
[
0,
76
]
]
}
] | [
{
"id": "1.0alpha7.train.981.ent0_0",
"type": "protein",
"text": [
"C-ERMAD"
],
"offsets": [
[
3,
10
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.981.ent1_0",
"type": "reagent",
"text": [
"Ez-(1-296) beads"
],
"offsets": [
[
38,
54
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.981.ent2_0",
"type": "protein",
"text": [
"EBP50"
],
"offsets": [
[
22,
27
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9368"
},
{
"db_name": "hgnc",
"db_id": "SLC9A3R1"
},
{
"db_name": "uniprot",
"db_id": "O14745"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.981.coref0",
"entity_ids": [
"1.0alpha7.train.981.ent0_0"
]
},
{
"id": "1.0alpha7.train.981.coref1",
"entity_ids": [
"1.0alpha7.train.981.ent1_0"
]
},
{
"id": "1.0alpha7.train.981.coref2",
"entity_ids": [
"1.0alpha7.train.981.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.981.rel0s1.0alpha7.train.981.ent0_0.o1.0alpha7.train.981.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.981.ent0_0",
"arg2_id": "1.0alpha7.train.981.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.981.rel1s1.0alpha7.train.981.ent1_0.o1.0alpha7.train.981.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.981.ent1_0",
"arg2_id": "1.0alpha7.train.981.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.982 | 6942927 | [
{
"id": "1.0alpha7.train.982.sent",
"type": "sentence",
"text": [
"The measurements of the binding constants of two TnI inhibitory fragments to TnC showed that TnI96-116 preferably interacts with the C-lobe of TnC, whereas its C-terminal extension, TnI96-148, is most tightly bound to the TnC N-lobe ( 27)."
],
"offsets": [
[
0,
243
]
]
}
] | [
{
"id": "1.0alpha7.train.982.ent0_0",
"type": "protein-region",
"text": [
"TnI96-148"
],
"offsets": [
[
185,
194
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent1_0",
"type": "protein-region",
"text": [
"TnC N-lobe"
],
"offsets": [
[
226,
236
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent2_0",
"type": "protein-region",
"text": [
"TnI96-116"
],
"offsets": [
[
95,
104
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent3_0",
"type": "protein",
"text": [
"TnC"
],
"offsets": [
[
79,
82
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent4_1",
"type": "protein",
"text": [
"TnC"
],
"offsets": [
[
146,
149
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent5_2",
"type": "protein",
"text": [
"TnC"
],
"offsets": [
[
226,
229
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent6_0",
"type": "protein",
"text": [
"TnI"
],
"offsets": [
[
50,
53
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.982.ent7_0",
"type": "protein-region",
"text": [
"C-lobe of TnC"
],
"offsets": [
[
135,
149
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.982.coref0",
"entity_ids": [
"1.0alpha7.train.982.ent0_0"
]
},
{
"id": "1.0alpha7.train.982.coref1",
"entity_ids": [
"1.0alpha7.train.982.ent1_0"
]
},
{
"id": "1.0alpha7.train.982.coref2",
"entity_ids": [
"1.0alpha7.train.982.ent2_0"
]
},
{
"id": "1.0alpha7.train.982.coref3",
"entity_ids": [
"1.0alpha7.train.982.ent3_0",
"1.0alpha7.train.982.ent4_1",
"1.0alpha7.train.982.ent5_2"
]
},
{
"id": "1.0alpha7.train.982.coref4",
"entity_ids": [
"1.0alpha7.train.982.ent6_0"
]
},
{
"id": "1.0alpha7.train.982.coref5",
"entity_ids": [
"1.0alpha7.train.982.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.982.rel0s1.0alpha7.train.982.ent2_0.o1.0alpha7.train.982.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent2_0",
"arg2_id": "1.0alpha7.train.982.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel1s1.0alpha7.train.982.ent0_0.o1.0alpha7.train.982.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent0_0",
"arg2_id": "1.0alpha7.train.982.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel2s1.0alpha7.train.982.ent3_0.o1.0alpha7.train.982.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent3_0",
"arg2_id": "1.0alpha7.train.982.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel2s1.0alpha7.train.982.ent4_1.o1.0alpha7.train.982.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent4_1",
"arg2_id": "1.0alpha7.train.982.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel2s1.0alpha7.train.982.ent5_2.o1.0alpha7.train.982.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent5_2",
"arg2_id": "1.0alpha7.train.982.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel3s1.0alpha7.train.982.ent6_0.o1.0alpha7.train.982.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent6_0",
"arg2_id": "1.0alpha7.train.982.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel4s1.0alpha7.train.982.ent2_0.o1.0alpha7.train.982.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent2_0",
"arg2_id": "1.0alpha7.train.982.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel4s1.0alpha7.train.982.ent2_0.o1.0alpha7.train.982.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent2_0",
"arg2_id": "1.0alpha7.train.982.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel4s1.0alpha7.train.982.ent2_0.o1.0alpha7.train.982.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent2_0",
"arg2_id": "1.0alpha7.train.982.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel5s1.0alpha7.train.982.ent1_0.o1.0alpha7.train.982.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent1_0",
"arg2_id": "1.0alpha7.train.982.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel6s1.0alpha7.train.982.ent0_0.o1.0alpha7.train.982.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent0_0",
"arg2_id": "1.0alpha7.train.982.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel6s1.0alpha7.train.982.ent0_0.o1.0alpha7.train.982.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent0_0",
"arg2_id": "1.0alpha7.train.982.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.982.rel6s1.0alpha7.train.982.ent0_0.o1.0alpha7.train.982.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.982.ent0_0",
"arg2_id": "1.0alpha7.train.982.ent5_2",
"normalized": []
}
] |
1.0alpha7.train.983 | 25166248 | [
{
"id": "1.0alpha7.train.983.sent",
"type": "sentence",
"text": [
"This is particularly likely for the C2A domain-syntaxin 1a interaction, because the chemical shift changes caused by syntaxin 1a binding to the C2A domain are in general small, indicating that few local rearrangements occur in the backbone of the C2A domain at the interacting surface."
],
"offsets": [
[
0,
285
]
]
}
] | [
{
"id": "1.0alpha7.train.983.ent0_0",
"type": "protein",
"text": [
"syntaxin 1a"
],
"offsets": [
[
47,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.983.ent1_1",
"type": "protein",
"text": [
"syntaxin 1a"
],
"offsets": [
[
117,
128
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.983.ent2_0",
"type": "protein-domain",
"text": [
"C2A domain"
],
"offsets": [
[
36,
46
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.983.ent3_1",
"type": "protein-domain",
"text": [
"C2A domain"
],
"offsets": [
[
144,
154
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.983.ent4_2",
"type": "protein-domain",
"text": [
"C2A domain"
],
"offsets": [
[
247,
257
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.983.coref0",
"entity_ids": [
"1.0alpha7.train.983.ent0_0",
"1.0alpha7.train.983.ent1_1"
]
},
{
"id": "1.0alpha7.train.983.coref1",
"entity_ids": [
"1.0alpha7.train.983.ent2_0",
"1.0alpha7.train.983.ent3_1",
"1.0alpha7.train.983.ent4_2"
]
}
] | [
{
"id": "1.0alpha7.train.983.rel0s1.0alpha7.train.983.ent0_0.o1.0alpha7.train.983.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.983.ent0_0",
"arg2_id": "1.0alpha7.train.983.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.983.rel0s1.0alpha7.train.983.ent0_0.o1.0alpha7.train.983.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.983.ent0_0",
"arg2_id": "1.0alpha7.train.983.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.983.rel0s1.0alpha7.train.983.ent0_0.o1.0alpha7.train.983.ent4_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.983.ent0_0",
"arg2_id": "1.0alpha7.train.983.ent4_2",
"normalized": []
},
{
"id": "1.0alpha7.train.983.rel0s1.0alpha7.train.983.ent1_1.o1.0alpha7.train.983.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.983.ent1_1",
"arg2_id": "1.0alpha7.train.983.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.983.rel0s1.0alpha7.train.983.ent1_1.o1.0alpha7.train.983.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.983.ent1_1",
"arg2_id": "1.0alpha7.train.983.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.983.rel0s1.0alpha7.train.983.ent1_1.o1.0alpha7.train.983.ent4_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.983.ent1_1",
"arg2_id": "1.0alpha7.train.983.ent4_2",
"normalized": []
}
] |
1.0alpha7.train.984 | 15090897 | [
{
"id": "1.0alpha7.train.984.sent",
"type": "sentence",
"text": [
"The analysis of Ras complexes by immunoblotting with anti-Flag antibody revealed that overexpression of BcrWT but not of BcrV1271A led to an increase in the amount of AF-6 bound to active Ras (Fig. 5A)."
],
"offsets": [
[
0,
207
]
]
}
] | [
{
"id": "1.0alpha7.train.984.ent0_0",
"type": "protein",
"text": [
"BcrV1271A"
],
"offsets": [
[
123,
132
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.984.ent1_0",
"type": "protein",
"text": [
"BcrWT"
],
"offsets": [
[
105,
110
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "613"
},
{
"db_name": "hgnc",
"db_id": "BCR"
},
{
"db_name": "uniprot",
"db_id": "P11274"
}
]
},
{
"id": "1.0alpha7.train.984.ent2_0",
"type": "protein",
"text": [
"AF-6"
],
"offsets": [
[
170,
174
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4301"
},
{
"db_name": "hgnc",
"db_id": "AFDN"
},
{
"db_name": "uniprot",
"db_id": "P55196"
}
]
},
{
"id": "1.0alpha7.train.984.ent3_0",
"type": "protein-family",
"text": [
"Ras"
],
"offsets": [
[
17,
20
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR020849"
}
]
},
{
"id": "1.0alpha7.train.984.ent4_1",
"type": "protein-family",
"text": [
"Ras"
],
"offsets": [
[
192,
195
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR020849"
}
]
},
{
"id": "1.0alpha7.train.984.ent5_0",
"type": "protein-complex",
"text": [
"Ras complexes"
],
"offsets": [
[
17,
30
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.984.ent6_0",
"type": "reagent",
"text": [
"anti-Flag antibody"
],
"offsets": [
[
54,
72
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.984.coref0",
"entity_ids": [
"1.0alpha7.train.984.ent0_0"
]
},
{
"id": "1.0alpha7.train.984.coref1",
"entity_ids": [
"1.0alpha7.train.984.ent1_0"
]
},
{
"id": "1.0alpha7.train.984.coref2",
"entity_ids": [
"1.0alpha7.train.984.ent2_0"
]
},
{
"id": "1.0alpha7.train.984.coref3",
"entity_ids": [
"1.0alpha7.train.984.ent3_0",
"1.0alpha7.train.984.ent4_1"
]
},
{
"id": "1.0alpha7.train.984.coref4",
"entity_ids": [
"1.0alpha7.train.984.ent5_0"
]
},
{
"id": "1.0alpha7.train.984.coref5",
"entity_ids": [
"1.0alpha7.train.984.ent6_0"
]
}
] | [
{
"id": "1.0alpha7.train.984.rel0s1.0alpha7.train.984.ent2_0.o1.0alpha7.train.984.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.984.ent2_0",
"arg2_id": "1.0alpha7.train.984.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.984.rel0s1.0alpha7.train.984.ent2_0.o1.0alpha7.train.984.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.984.ent2_0",
"arg2_id": "1.0alpha7.train.984.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.985 | 4944751 | [
{
"id": "1.0alpha7.train.985.sent",
"type": "sentence",
"text": [
"The Ral binding domain of RalBP1 binds to the GTP-bound form of Ral but not to the GDP-bound form ( 23)."
],
"offsets": [
[
0,
109
]
]
}
] | [
{
"id": "1.0alpha7.train.985.ent0_0",
"type": "chemical",
"text": [
"GDP"
],
"offsets": [
[
88,
91
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398618"
}
]
},
{
"id": "1.0alpha7.train.985.ent1_0",
"type": "protein",
"text": [
"RalBP1"
],
"offsets": [
[
28,
34
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10928"
},
{
"db_name": "hgnc",
"db_id": "RALBP1"
},
{
"db_name": "uniprot",
"db_id": "A0A1W2PRI7"
}
]
},
{
"id": "1.0alpha7.train.985.ent2_0",
"type": "protein",
"text": [
"GTP-bound form of Ral"
],
"offsets": [
[
49,
71
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.985.ent3_0",
"type": "protein",
"text": [
"Ral"
],
"offsets": [
[
5,
8
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5898"
},
{
"db_name": "hgnc",
"db_id": "RALA"
},
{
"db_name": "uniprot",
"db_id": "P11233"
}
]
},
{
"id": "1.0alpha7.train.985.ent4_1",
"type": "protein",
"text": [
"Ral"
],
"offsets": [
[
68,
71
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5898"
},
{
"db_name": "hgnc",
"db_id": "RALA"
},
{
"db_name": "uniprot",
"db_id": "P11233"
}
]
},
{
"id": "1.0alpha7.train.985.ent5_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
49,
52
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.985.ent6_0",
"type": "protein",
"text": [
"GDP-bound form"
],
"offsets": [
[
88,
102
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.985.ent7_0",
"type": "protein-domain",
"text": [
"Ral binding domain of RalBP1"
],
"offsets": [
[
5,
34
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.985.coref0",
"entity_ids": [
"1.0alpha7.train.985.ent0_0"
]
},
{
"id": "1.0alpha7.train.985.coref1",
"entity_ids": [
"1.0alpha7.train.985.ent1_0"
]
},
{
"id": "1.0alpha7.train.985.coref2",
"entity_ids": [
"1.0alpha7.train.985.ent2_0"
]
},
{
"id": "1.0alpha7.train.985.coref3",
"entity_ids": [
"1.0alpha7.train.985.ent3_0",
"1.0alpha7.train.985.ent4_1"
]
},
{
"id": "1.0alpha7.train.985.coref4",
"entity_ids": [
"1.0alpha7.train.985.ent5_0"
]
},
{
"id": "1.0alpha7.train.985.coref5",
"entity_ids": [
"1.0alpha7.train.985.ent6_0"
]
},
{
"id": "1.0alpha7.train.985.coref6",
"entity_ids": [
"1.0alpha7.train.985.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.985.rel0s1.0alpha7.train.985.ent1_0.o1.0alpha7.train.985.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.985.ent1_0",
"arg2_id": "1.0alpha7.train.985.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.985.rel1s1.0alpha7.train.985.ent1_0.o1.0alpha7.train.985.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.985.ent1_0",
"arg2_id": "1.0alpha7.train.985.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.985.rel2s1.0alpha7.train.985.ent3_0.o1.0alpha7.train.985.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.985.ent3_0",
"arg2_id": "1.0alpha7.train.985.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.985.rel2s1.0alpha7.train.985.ent4_1.o1.0alpha7.train.985.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.985.ent4_1",
"arg2_id": "1.0alpha7.train.985.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.985.rel3s1.0alpha7.train.985.ent0_0.o1.0alpha7.train.985.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.985.ent0_0",
"arg2_id": "1.0alpha7.train.985.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.985.rel3s1.0alpha7.train.985.ent0_0.o1.0alpha7.train.985.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.985.ent0_0",
"arg2_id": "1.0alpha7.train.985.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.986 | 9863621 | [
{
"id": "1.0alpha7.train.986.sent",
"type": "sentence",
"text": [
"Now, we report that Tsg101 binds the COOH-terminal region of the endosomal protein hepatocyte growth factor - regulated tyrosine kinase (substrateHrs; residues 222 - 777)."
],
"offsets": [
[
0,
174
]
]
}
] | [
{
"id": "1.0alpha7.train.986.ent0_0",
"type": "protein",
"text": [
"Tsg101"
],
"offsets": [
[
21,
27
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7251"
},
{
"db_name": "hgnc",
"db_id": "TSG101"
},
{
"db_name": "uniprot",
"db_id": "Q99816"
}
]
},
{
"id": "1.0alpha7.train.986.ent1_0",
"type": "protein",
"text": [
"hepatocyte growth factor - regulated tyrosine kinase"
],
"offsets": [
[
86,
138
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.986.coref0",
"entity_ids": [
"1.0alpha7.train.986.ent0_0"
]
},
{
"id": "1.0alpha7.train.986.coref1",
"entity_ids": [
"1.0alpha7.train.986.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.986.rel0s1.0alpha7.train.986.ent0_0.o1.0alpha7.train.986.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.986.ent0_0",
"arg2_id": "1.0alpha7.train.986.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.987 | 9155274 | [
{
"id": "1.0alpha7.train.987.sent",
"type": "sentence",
"text": [
"We propose that it is the binding of TSC1 and TSC2 that results in a functional unit."
],
"offsets": [
[
0,
90
]
]
}
] | [
{
"id": "1.0alpha7.train.987.ent0_0",
"type": "protein",
"text": [
"TSC2"
],
"offsets": [
[
50,
54
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7249"
},
{
"db_name": "hgnc",
"db_id": "TSC2"
},
{
"db_name": "uniprot",
"db_id": "P49815"
}
]
},
{
"id": "1.0alpha7.train.987.ent1_0",
"type": "protein",
"text": [
"TSC1"
],
"offsets": [
[
39,
43
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7248"
},
{
"db_name": "hgnc",
"db_id": "TSC1"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.987.coref0",
"entity_ids": [
"1.0alpha7.train.987.ent0_0"
]
},
{
"id": "1.0alpha7.train.987.coref1",
"entity_ids": [
"1.0alpha7.train.987.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.987.rel0s1.0alpha7.train.987.ent0_0.o1.0alpha7.train.987.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.987.ent0_0",
"arg2_id": "1.0alpha7.train.987.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.988 | 2046256 | [
{
"id": "1.0alpha7.train.988.sent",
"type": "sentence",
"text": [
"Taking the results together, we conclude that DREF binds to the DRE-related sequences at 540 to 514 located upstream of the initiation site of transcript-b."
],
"offsets": [
[
0,
161
]
]
}
] | [
{
"id": "1.0alpha7.train.988.ent0_0",
"type": "DNA",
"text": [
"DRE-related sequences"
],
"offsets": [
[
66,
87
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.988.ent1_0",
"type": "protein",
"text": [
"DREF"
],
"offsets": [
[
47,
51
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9189"
},
{
"db_name": "hgnc",
"db_id": "ZBED1"
},
{
"db_name": "uniprot",
"db_id": "O96006"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.988.coref0",
"entity_ids": [
"1.0alpha7.train.988.ent0_0"
]
},
{
"id": "1.0alpha7.train.988.coref1",
"entity_ids": [
"1.0alpha7.train.988.ent1_0"
]
}
] | [
{
"id": "1.0alpha7.train.988.rel0s1.0alpha7.train.988.ent0_0.o1.0alpha7.train.988.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.988.ent0_0",
"arg2_id": "1.0alpha7.train.988.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.989 | 4249946 | [
{
"id": "1.0alpha7.train.989.sent",
"type": "sentence",
"text": [
"Although the result of the binding interaction may be quite complex, the direct HMG-1/TBP interaction may provide a similar effect in reducing an energetically unfavorable interaction between the N terminus and DNA and contributing to the mechanism by which HMG-1 binding stabilizes the complex."
],
"offsets": [
[
0,
295
]
]
}
] | [
{
"id": "1.0alpha7.train.989.ent0_0",
"type": "protein",
"text": [
"TBP"
],
"offsets": [
[
86,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.989.ent1_0",
"type": "protein",
"text": [
"HMG-1"
],
"offsets": [
[
80,
85
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3146"
},
{
"db_name": "hgnc",
"db_id": "HMGB1"
},
{
"db_name": "uniprot",
"db_id": "P09429"
}
]
},
{
"id": "1.0alpha7.train.989.ent2_1",
"type": "protein",
"text": [
"HMG-1"
],
"offsets": [
[
258,
263
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3146"
},
{
"db_name": "hgnc",
"db_id": "HMGB1"
},
{
"db_name": "uniprot",
"db_id": "P09429"
}
]
},
{
"id": "1.0alpha7.train.989.ent3_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
211,
214
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.989.coref0",
"entity_ids": [
"1.0alpha7.train.989.ent0_0"
]
},
{
"id": "1.0alpha7.train.989.coref1",
"entity_ids": [
"1.0alpha7.train.989.ent1_0",
"1.0alpha7.train.989.ent2_1"
]
},
{
"id": "1.0alpha7.train.989.coref2",
"entity_ids": [
"1.0alpha7.train.989.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.989.rel0s1.0alpha7.train.989.ent0_0.o1.0alpha7.train.989.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.989.ent0_0",
"arg2_id": "1.0alpha7.train.989.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.989.rel0s1.0alpha7.train.989.ent0_0.o1.0alpha7.train.989.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.989.ent0_0",
"arg2_id": "1.0alpha7.train.989.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.990 | 19411613 | [
{
"id": "1.0alpha7.train.990.sent",
"type": "sentence",
"text": [
"Our results indicate that epsin's UIMs do not directly bind ubiquitin."
],
"offsets": [
[
0,
70
]
]
}
] | [
{
"id": "1.0alpha7.train.990.ent0_0",
"type": "protein-family",
"text": [
"epsin"
],
"offsets": [
[
26,
31
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.990.ent1_0",
"type": "protein-motif",
"text": [
"UIMs"
],
"offsets": [
[
34,
38
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.990.ent2_0",
"type": "protein-family",
"text": [
"ubiquitin"
],
"offsets": [
[
60,
69
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000626"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.990.coref0",
"entity_ids": [
"1.0alpha7.train.990.ent0_0"
]
},
{
"id": "1.0alpha7.train.990.coref1",
"entity_ids": [
"1.0alpha7.train.990.ent1_0"
]
},
{
"id": "1.0alpha7.train.990.coref2",
"entity_ids": [
"1.0alpha7.train.990.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.990.rel0s1.0alpha7.train.990.ent1_0.o1.0alpha7.train.990.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.990.ent1_0",
"arg2_id": "1.0alpha7.train.990.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.990.rel1s1.0alpha7.train.990.ent0_0.o1.0alpha7.train.990.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.990.ent0_0",
"arg2_id": "1.0alpha7.train.990.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.991 | 38376 | [
{
"id": "1.0alpha7.train.991.sent",
"type": "sentence",
"text": [
"However, both in vitro and i n vivo protein-protein interaction assays revealed that replacement of Ser with Asp does not interfere with the binding of CREB to CBP."
],
"offsets": [
[
0,
175
]
]
}
] | [
{
"id": "1.0alpha7.train.991.ent0_0",
"type": "protein",
"text": [
"CBP"
],
"offsets": [
[
171,
174
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1387"
},
{
"db_name": "hgnc",
"db_id": "CREBBP"
},
{
"db_name": "uniprot",
"db_id": "Q92793"
}
]
},
{
"id": "1.0alpha7.train.991.ent1_0",
"type": "protein",
"text": [
"CREB"
],
"offsets": [
[
161,
165
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1385"
},
{
"db_name": "hgnc",
"db_id": "CREB1"
},
{
"db_name": "uniprot",
"db_id": "P16220"
}
]
},
{
"id": "1.0alpha7.train.991.ent2_0",
"type": "amino-acid",
"text": [
"Asp"
],
"offsets": [
[
117,
120
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5960"
}
]
},
{
"id": "1.0alpha7.train.991.ent3_0",
"type": "amino-acid",
"text": [
"Ser"
],
"offsets": [
[
106,
109
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5951"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.991.coref0",
"entity_ids": [
"1.0alpha7.train.991.ent0_0"
]
},
{
"id": "1.0alpha7.train.991.coref1",
"entity_ids": [
"1.0alpha7.train.991.ent1_0"
]
},
{
"id": "1.0alpha7.train.991.coref2",
"entity_ids": [
"1.0alpha7.train.991.ent2_0"
]
},
{
"id": "1.0alpha7.train.991.coref3",
"entity_ids": [
"1.0alpha7.train.991.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.991.rel0s1.0alpha7.train.991.ent0_0.o1.0alpha7.train.991.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.991.ent0_0",
"arg2_id": "1.0alpha7.train.991.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.992 | 9847866 | [
{
"id": "1.0alpha7.train.992.sent",
"type": "sentence",
"text": [
"LRP bound to CRT or BSA was detected after electrophoresis and transfer to nitrocellulose membranes with anti-LRP antibody (8G1)."
],
"offsets": [
[
0,
132
]
]
}
] | [
{
"id": "1.0alpha7.train.992.ent0_0",
"type": "protein-family",
"text": [
"LRP"
],
"offsets": [
[
0,
3
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.992.ent1_1",
"type": "protein-family",
"text": [
"LRP"
],
"offsets": [
[
113,
116
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.992.ent2_0",
"type": "reagent",
"text": [
"anti-LRP antibody"
],
"offsets": [
[
108,
125
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.992.ent3_0",
"type": "reagent",
"text": [
"8G1"
],
"offsets": [
[
127,
130
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.992.ent4_0",
"type": "reagent",
"text": [
"BSA"
],
"offsets": [
[
22,
25
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.992.ent5_0",
"type": "protein",
"text": [
"CRT"
],
"offsets": [
[
14,
17
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "811"
},
{
"db_name": "hgnc",
"db_id": "CALR"
},
{
"db_name": "uniprot",
"db_id": "P27797"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.992.coref0",
"entity_ids": [
"1.0alpha7.train.992.ent0_0",
"1.0alpha7.train.992.ent1_1"
]
},
{
"id": "1.0alpha7.train.992.coref1",
"entity_ids": [
"1.0alpha7.train.992.ent2_0",
"1.0alpha7.train.992.ent3_0"
]
},
{
"id": "1.0alpha7.train.992.coref2",
"entity_ids": [
"1.0alpha7.train.992.ent4_0"
]
},
{
"id": "1.0alpha7.train.992.coref3",
"entity_ids": [
"1.0alpha7.train.992.ent5_0"
]
}
] | [
{
"id": "1.0alpha7.train.992.rel0s1.0alpha7.train.992.ent0_0.o1.0alpha7.train.992.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.992.ent0_0",
"arg2_id": "1.0alpha7.train.992.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.992.rel0s1.0alpha7.train.992.ent1_1.o1.0alpha7.train.992.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.992.ent1_1",
"arg2_id": "1.0alpha7.train.992.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.992.rel1s1.0alpha7.train.992.ent0_0.o1.0alpha7.train.992.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.992.ent0_0",
"arg2_id": "1.0alpha7.train.992.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.992.rel1s1.0alpha7.train.992.ent1_1.o1.0alpha7.train.992.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.992.ent1_1",
"arg2_id": "1.0alpha7.train.992.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.993 | 5927066 | [
{
"id": "1.0alpha7.train.993.sent",
"type": "sentence",
"text": [
"The simplest interpretation of our sequence data is that the B2 element serves as a second binding site for ORC, because ORC binds the ACS."
],
"offsets": [
[
0,
143
]
]
}
] | [
{
"id": "1.0alpha7.train.993.ent0_0",
"type": "DNA",
"text": [
"ACS"
],
"offsets": [
[
139,
142
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.993.ent1_0",
"type": "protein-complex",
"text": [
"ORC"
],
"offsets": [
[
110,
113
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.993.ent2_1",
"type": "protein-complex",
"text": [
"ORC"
],
"offsets": [
[
124,
127
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.993.ent3_0",
"type": "DNA",
"text": [
"B2 element"
],
"offsets": [
[
62,
72
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.993.coref0",
"entity_ids": [
"1.0alpha7.train.993.ent0_0"
]
},
{
"id": "1.0alpha7.train.993.coref1",
"entity_ids": [
"1.0alpha7.train.993.ent1_0",
"1.0alpha7.train.993.ent2_1"
]
},
{
"id": "1.0alpha7.train.993.coref2",
"entity_ids": [
"1.0alpha7.train.993.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.993.rel0s1.0alpha7.train.993.ent0_0.o1.0alpha7.train.993.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.993.ent0_0",
"arg2_id": "1.0alpha7.train.993.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.993.rel0s1.0alpha7.train.993.ent0_0.o1.0alpha7.train.993.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.993.ent0_0",
"arg2_id": "1.0alpha7.train.993.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.993.rel1s1.0alpha7.train.993.ent1_0.o1.0alpha7.train.993.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.993.ent1_0",
"arg2_id": "1.0alpha7.train.993.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.993.rel1s1.0alpha7.train.993.ent2_1.o1.0alpha7.train.993.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.993.ent2_1",
"arg2_id": "1.0alpha7.train.993.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.994 | 19373835 | [
{
"id": "1.0alpha7.train.994.sent",
"type": "sentence",
"text": [
"To determine whether cdc-42(RNAi) disrupts embryonic polarity simply by disrupting actin organization in the early embryo, we examined cortical actin localization in early cdc-42(RNAi) embryos by immunofluorescence to actin and by phalloidin binding to filamentous actin."
],
"offsets": [
[
0,
271
]
]
}
] | [
{
"id": "1.0alpha7.train.994.ent0_0",
"type": "RNA",
"text": [
"cdc-42(RNAi)"
],
"offsets": [
[
21,
33
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.994.ent1_1",
"type": "RNA",
"text": [
"cdc-42(RNAi)"
],
"offsets": [
[
172,
184
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.994.ent2_0",
"type": "chemical",
"text": [
"phalloidin"
],
"offsets": [
[
231,
241
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "4752"
}
]
},
{
"id": "1.0alpha7.train.994.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
83,
88
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.994.ent4_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
144,
149
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.994.ent5_2",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
218,
223
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.994.ent6_3",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
265,
270
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.994.ent7_0",
"type": "protein",
"text": [
"filamentous actin"
],
"offsets": [
[
253,
270
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.994.coref0",
"entity_ids": [
"1.0alpha7.train.994.ent0_0",
"1.0alpha7.train.994.ent1_1"
]
},
{
"id": "1.0alpha7.train.994.coref1",
"entity_ids": [
"1.0alpha7.train.994.ent2_0"
]
},
{
"id": "1.0alpha7.train.994.coref2",
"entity_ids": [
"1.0alpha7.train.994.ent3_0",
"1.0alpha7.train.994.ent4_1",
"1.0alpha7.train.994.ent5_2",
"1.0alpha7.train.994.ent6_3"
]
},
{
"id": "1.0alpha7.train.994.coref3",
"entity_ids": [
"1.0alpha7.train.994.ent7_0"
]
}
] | [
{
"id": "1.0alpha7.train.994.rel0s1.0alpha7.train.994.ent2_0.o1.0alpha7.train.994.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.994.ent2_0",
"arg2_id": "1.0alpha7.train.994.ent7_0",
"normalized": []
}
] |
1.0alpha7.train.995 | 15178753 | [
{
"id": "1.0alpha7.train.995.sent",
"type": "sentence",
"text": [
"Our studies suggest a role for p300 bound to SAF-A at S/MAR elements."
],
"offsets": [
[
0,
71
]
]
}
] | [
{
"id": "1.0alpha7.train.995.ent0_0",
"type": "protein",
"text": [
"SAF-A"
],
"offsets": [
[
47,
52
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3192"
},
{
"db_name": "hgnc",
"db_id": "HNRNPU"
},
{
"db_name": "uniprot",
"db_id": "Q00839"
}
]
},
{
"id": "1.0alpha7.train.995.ent1_0",
"type": "DNA",
"text": [
"S/MAR elements"
],
"offsets": [
[
56,
70
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.995.ent2_0",
"type": "protein",
"text": [
"p300"
],
"offsets": [
[
32,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2033"
},
{
"db_name": "hgnc",
"db_id": "EP300"
},
{
"db_name": "uniprot",
"db_id": "Q09472"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.995.coref0",
"entity_ids": [
"1.0alpha7.train.995.ent0_0"
]
},
{
"id": "1.0alpha7.train.995.coref1",
"entity_ids": [
"1.0alpha7.train.995.ent1_0"
]
},
{
"id": "1.0alpha7.train.995.coref2",
"entity_ids": [
"1.0alpha7.train.995.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.995.rel0s1.0alpha7.train.995.ent0_0.o1.0alpha7.train.995.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.995.ent0_0",
"arg2_id": "1.0alpha7.train.995.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.996 | 25269195 | [
{
"id": "1.0alpha7.train.996.sent",
"type": "sentence",
"text": [
"Transcription of tf-a is increased when TF-A homodimers bind to the TF-RE."
],
"offsets": [
[
0,
78
]
]
}
] | [] | [] | [] | [] |
1.0alpha7.train.997 | 3052273 | [
{
"id": "1.0alpha7.train.997.sent",
"type": "sentence",
"text": [
"Binding of CRKL to Gab1 is expected to lead to an accumulation of C3G near the plasma membrane where it may exert its effect on Rap1."
],
"offsets": [
[
0,
137
]
]
}
] | [
{
"id": "1.0alpha7.train.997.ent0_0",
"type": "protein",
"text": [
"C3G"
],
"offsets": [
[
69,
72
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2889"
},
{
"db_name": "hgnc",
"db_id": "RAPGEF1"
},
{
"db_name": "uniprot",
"db_id": "Q13905"
}
]
},
{
"id": "1.0alpha7.train.997.ent1_0",
"type": "protein",
"text": [
"Rap1"
],
"offsets": [
[
132,
136
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5906"
},
{
"db_name": "hgnc",
"db_id": "RAP1A"
},
{
"db_name": "uniprot",
"db_id": "P62834"
}
]
},
{
"id": "1.0alpha7.train.997.ent2_0",
"type": "protein",
"text": [
"CRKL"
],
"offsets": [
[
12,
16
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1399"
},
{
"db_name": "hgnc",
"db_id": "CRKL"
},
{
"db_name": "uniprot",
"db_id": "P46109"
}
]
},
{
"id": "1.0alpha7.train.997.ent3_0",
"type": "protein",
"text": [
"Gab1"
],
"offsets": [
[
21,
25
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2549"
},
{
"db_name": "hgnc",
"db_id": "GAB1"
},
{
"db_name": "uniprot",
"db_id": "Q13480"
}
]
}
] | [] | [
{
"id": "1.0alpha7.train.997.coref0",
"entity_ids": [
"1.0alpha7.train.997.ent0_0"
]
},
{
"id": "1.0alpha7.train.997.coref1",
"entity_ids": [
"1.0alpha7.train.997.ent1_0"
]
},
{
"id": "1.0alpha7.train.997.coref2",
"entity_ids": [
"1.0alpha7.train.997.ent2_0"
]
},
{
"id": "1.0alpha7.train.997.coref3",
"entity_ids": [
"1.0alpha7.train.997.ent3_0"
]
}
] | [
{
"id": "1.0alpha7.train.997.rel0s1.0alpha7.train.997.ent2_0.o1.0alpha7.train.997.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.997.ent2_0",
"arg2_id": "1.0alpha7.train.997.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.998 | 11871776 | [
{
"id": "1.0alpha7.train.998.sent",
"type": "sentence",
"text": [
"Interestingly, GimC/ PFD can bind denatured forms of actin and tubulin, suggesting that it plays a more active role during protein folding than does GroES, which does not interact with non-native polypeptides."
],
"offsets": [
[
0,
211
]
]
}
] | [
{
"id": "1.0alpha7.train.998.ent0_0",
"type": "protein",
"text": [
"denatured forms of actin"
],
"offsets": [
[
35,
59
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.998.ent1_0",
"type": "protein",
"text": [
"tubulin"
],
"offsets": [
[
64,
71
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.998.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
54,
59
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.998.ent3_0",
"type": "protein",
"text": [
"GroES"
],
"offsets": [
[
151,
156
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3336"
},
{
"db_name": "hgnc",
"db_id": "HSPE1"
},
{
"db_name": "uniprot",
"db_id": "P61604"
}
]
},
{
"id": "1.0alpha7.train.998.ent4_0",
"type": "protein",
"text": [
"GimC/ PFD"
],
"offsets": [
[
16,
25
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.998.coref0",
"entity_ids": [
"1.0alpha7.train.998.ent0_0"
]
},
{
"id": "1.0alpha7.train.998.coref1",
"entity_ids": [
"1.0alpha7.train.998.ent1_0"
]
},
{
"id": "1.0alpha7.train.998.coref2",
"entity_ids": [
"1.0alpha7.train.998.ent2_0"
]
},
{
"id": "1.0alpha7.train.998.coref3",
"entity_ids": [
"1.0alpha7.train.998.ent3_0"
]
},
{
"id": "1.0alpha7.train.998.coref4",
"entity_ids": [
"1.0alpha7.train.998.ent4_0"
]
}
] | [
{
"id": "1.0alpha7.train.998.rel0s1.0alpha7.train.998.ent0_0.o1.0alpha7.train.998.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.998.ent0_0",
"arg2_id": "1.0alpha7.train.998.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.998.rel1s1.0alpha7.train.998.ent1_0.o1.0alpha7.train.998.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.998.ent1_0",
"arg2_id": "1.0alpha7.train.998.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.999 | 4165221 | [
{
"id": "1.0alpha7.train.999.sent",
"type": "sentence",
"text": [
"After cleavage there was a dramatic increase in talin binding to the beta3 tail (Fig. 5, A and B)."
],
"offsets": [
[
0,
103
]
]
}
] | [
{
"id": "1.0alpha7.train.999.ent0_0",
"type": "protein-family",
"text": [
"talin"
],
"offsets": [
[
49,
54
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR015224"
}
]
},
{
"id": "1.0alpha7.train.999.ent1_0",
"type": "protein",
"text": [
"beta3"
],
"offsets": [
[
71,
76
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.999.ent2_0",
"type": "protein-region",
"text": [
"beta3 tail"
],
"offsets": [
[
71,
81
]
],
"normalized": []
}
] | [] | [
{
"id": "1.0alpha7.train.999.coref0",
"entity_ids": [
"1.0alpha7.train.999.ent0_0"
]
},
{
"id": "1.0alpha7.train.999.coref1",
"entity_ids": [
"1.0alpha7.train.999.ent1_0"
]
},
{
"id": "1.0alpha7.train.999.coref2",
"entity_ids": [
"1.0alpha7.train.999.ent2_0"
]
}
] | [
{
"id": "1.0alpha7.train.999.rel0s1.0alpha7.train.999.ent0_0.o1.0alpha7.train.999.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.999.ent0_0",
"arg2_id": "1.0alpha7.train.999.ent1_0",
"normalized": []
}
] |