Commit
·
7ff86cd
1
Parent(s):
55c4f25
upload hub_repos/cantemist/README.md to hub from bigbio repo
Browse files
README.md
ADDED
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
|
2 |
+
---
|
3 |
+
language:
|
4 |
+
- es
|
5 |
+
license: cc-by-4.0
|
6 |
+
license_bigbio_shortname: CC_BY_4p0
|
7 |
+
pretty_name: CANTEMIST
|
8 |
+
---
|
9 |
+
|
10 |
+
|
11 |
+
# Dataset Card for CANTEMIST
|
12 |
+
|
13 |
+
## Dataset Description
|
14 |
+
|
15 |
+
- **Homepage:** https://temu.bsc.es/cantemist/?p=4338
|
16 |
+
- **Pubmed:** False
|
17 |
+
- **Public:** True
|
18 |
+
- **Tasks:** Named Entity Recognition, Named Entity Disambiguation, Text Classification
|
19 |
+
|
20 |
+
|
21 |
+
Collection of 1301 oncological clinical case reports written in Spanish, with tumor morphology mentions manually annotated and mapped by clinical experts to a controlled terminology. Every tumor morphology mention is linked to an eCIE-O code (the Spanish equivalent of ICD-O).
|
22 |
+
|
23 |
+
The original dataset is distributed in Brat format, and was randomly sampled into 3 subsets. The training, development and test sets contain 501, 500 and 300 documents each, respectively.
|
24 |
+
|
25 |
+
This dataset was designed for the CANcer TExt Mining Shared Task, sponsored by Plan-TL. The task is divided in 3 subtasks: CANTEMIST-NER, CANTEMIST_NORM and CANTEMIST-CODING.
|
26 |
+
|
27 |
+
CANTEMIST-NER track: requires finding automatically tumor morphology mentions. All tumor morphology mentions are defined by their corresponding character offsets in UTF-8 plain text medical documents.
|
28 |
+
|
29 |
+
CANTEMIST-NORM track: clinical concept normalization or named entity normalization task that requires to return all tumor morphology entity mentions together with their corresponding eCIE-O-3.1 codes i.e. finding and normalizing tumor morphology mentions.
|
30 |
+
|
31 |
+
CANTEMIST-CODING track: requires returning for each of document a ranked list of its corresponding ICD-O-3 codes. This it is essentially a sort of indexing or multi-label classification task or oncology clinical coding.
|
32 |
+
|
33 |
+
For further information, please visit https://temu.bsc.es/cantemist or send an email to encargo-pln-life@bsc.es
|
34 |
+
|
35 |
+
|
36 |
+
|
37 |
+
## Citation Information
|
38 |
+
|
39 |
+
```
|
40 |
+
@article{miranda2020named,
|
41 |
+
title={Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results.},
|
42 |
+
author={Miranda-Escalada, Antonio and Farr{'e}, Eul{\`a}lia and Krallinger, Martin},
|
43 |
+
journal={IberLEF@ SEPLN},
|
44 |
+
pages={303--323},
|
45 |
+
year={2020}
|
46 |
+
}
|
47 |
+
|
48 |
+
```
|