gabrielaltay commited on
Commit
c5338f0
1 Parent(s): 094e58f

upload hub_repos/n2c2_2010/README.md to hub from bigbio repo

Browse files
Files changed (1) hide show
  1. README.md +62 -0
README.md ADDED
@@ -0,0 +1,62 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ ---
3
+ language:
4
+ - en
5
+ license: other
6
+ license_bigbio_shortname: DUA
7
+ pretty_name: n2c2 2010 Concepts, Assertions, and Relations
8
+ ---
9
+
10
+
11
+ # Dataset Card for n2c2 2010 Concepts, Assertions, and Relations
12
+
13
+ ## Dataset Description
14
+
15
+ - **Homepage:** https://portal.dbmi.hms.harvard.edu/projects/n2c2-nlp/
16
+ - **Pubmed:** False
17
+ - **Public:** False
18
+ - **Tasks:** Named Entity Recognition, Relation Extraction
19
+
20
+
21
+ The i2b2/VA corpus contained de-identified discharge summaries from Beth Israel
22
+ Deaconess Medical Center, Partners Healthcare, and University of Pittsburgh Medical
23
+ Center (UPMC). In addition, UPMC contributed de-identified progress notes to the
24
+ i2b2/VA corpus. This dataset contains the records from Beth Israel and Partners.
25
+
26
+ The 2010 i2b2/VA Workshop on Natural Language Processing Challenges for Clinical Records comprises three tasks:
27
+ 1) a concept extraction task focused on the extraction of medical concepts from patient reports;
28
+ 2) an assertion classification task focused on assigning assertion types for medical problem concepts;
29
+ 3) a relation classification task focused on assigning relation types that hold between medical problems,
30
+ tests, and treatments.
31
+
32
+ i2b2 and the VA provided an annotated reference standard corpus for the three tasks.
33
+ Using this reference standard, 22 systems were developed for concept extraction,
34
+ 21 for assertion classification, and 16 for relation classification.
35
+
36
+
37
+
38
+ ## Citation Information
39
+
40
+ ```
41
+ @article{DBLP:journals/jamia/UzunerSSD11,
42
+ author = {
43
+ Ozlem Uzuner and
44
+ Brett R. South and
45
+ Shuying Shen and
46
+ Scott L. DuVall
47
+ },
48
+ title = {2010 i2b2/VA challenge on concepts, assertions, and relations in clinical
49
+ text},
50
+ journal = {J. Am. Medical Informatics Assoc.},
51
+ volume = {18},
52
+ number = {5},
53
+ pages = {552--556},
54
+ year = {2011},
55
+ url = {https://doi.org/10.1136/amiajnl-2011-000203},
56
+ doi = {10.1136/amiajnl-2011-000203},
57
+ timestamp = {Mon, 11 May 2020 23:00:20 +0200},
58
+ biburl = {https://dblp.org/rec/journals/jamia/UzunerSSD11.bib},
59
+ bibsource = {dblp computer science bibliography, https://dblp.org}
60
+ }
61
+
62
+ ```