davidkartchner
commited on
Commit
•
4022937
1
Parent(s):
d85246d
Correctly parse conglomerate entity normalizations
Browse filesSome entities have multiple normalizations grouped together with a '+' character (e.g. something that looks similar to "MESH:D1089843+D1998523"). These should be split into multiple normalizations.
This also fixes an error where some normalizations have an extra "MESH:" prepended to the `db_id`
- ncbi_disease.py +13 -1
ncbi_disease.py
CHANGED
@@ -238,8 +238,20 @@ class NCBIDiseaseDataset(datasets.GeneratorBasedBuilder):
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normalized.append(
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{"db_name": "OMIM", "db_id": x.strip().split(":")[-1]}
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)
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else:
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-
normalized.append(
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unified_entities.append(
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{
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normalized.append(
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{"db_name": "OMIM", "db_id": x.strip().split(":")[-1]}
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)
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+
elif "+" in x:
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+
normalized.extend(
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+
[
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+
{
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+
"db_name": "MESH",
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+
"db_id": y.split(":")[-1].strip(),
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+
}
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+
for y in x.split("+")
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+
]
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+
)
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+
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else:
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+
normalized.append(
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+
{"db_name": "MESH", "db_id": x.split(":")[-1].strip()}
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unified_entities.append(
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{
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