Chris Oswald
commited on
Commit
•
2c8bc60
1
Parent(s):
35aea2f
testing uint16
Browse files
SPIDER.py
CHANGED
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@@ -76,8 +76,9 @@ def standardize_3D_image(
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image = np.transpose(image, axes=[1, 2, 0])
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# Resize image
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image = skimage.transform.resize(image, resize_shape)
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# Rescale to
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image = skimage.img_as_ubyte(image)
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return image
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def standardize_3D_mask(
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@@ -99,8 +100,9 @@ def standardize_3D_mask(
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mode='constant',
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cval=0,
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)
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# Rescale to
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mask = skimage.img_as_ubyte(mask)
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return mask
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# Define constants
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image = np.transpose(image, axes=[1, 2, 0])
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# Resize image
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image = skimage.transform.resize(image, resize_shape)
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# Rescale to uint16 type (required for PyArrow and PIL)
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# image = skimage.img_as_ubyte(image)
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image = skimage.img_as_uint(image)
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return image
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def standardize_3D_mask(
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mode='constant',
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cval=0,
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)
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# Rescale to uint16 type (required for PyArrow and PIL)
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# mask = skimage.img_as_ubyte(mask)
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mask = skimage.img_as_uint(mask)
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return mask
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# Define constants
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