Chris Oswald commited on
Commit
6bb95ec
·
1 Parent(s): 0dfab66
Files changed (1) hide show
  1. SPIDER.py +3 -3
SPIDER.py CHANGED
@@ -503,12 +503,12 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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  # Convert .mha mask to original size numeric array
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  mask_array_original = sitk.GetArrayFromImage(mask)
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- # Rescale to UInt8 type (required for PyArrow and PIL)
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- mask_array_rescaled = skimage.img_as_ubyte(mask_array_original)
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  # Convert .mha mask to standardized numeric array
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  mask_array_standardized = standardize_3D_image(
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- mask_array_rescaled,
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  resize_shape,
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  )
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  # Convert .mha mask to original size numeric array
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  mask_array_original = sitk.GetArrayFromImage(mask)
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+ # Convert to Uint8 (range is [0,225], so all values should fit in Uint8)
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+ mask_array_standardized = np.array(mask_array_original, dtype='uint8')
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  # Convert .mha mask to standardized numeric array
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  mask_array_standardized = standardize_3D_image(
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+ mask_array_standardized,
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  resize_shape,
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  )
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