Datasets:
Tasks:
Question Answering
Modalities:
Text
Formats:
json
Languages:
English
Size:
10K - 100K
License:
Update README.md
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README.md
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license: mit
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---
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license: mit
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language:
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- en
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pretty_name: "MrGO Anatomist" # Example: SQuAD
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task_categories:
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- question-answering
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model_creator: Chime Ogbuji
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size_categories:
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- "10K<n<100K"
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source_datasets:
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- "FMA" # Example: wikipedia
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tags:
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- medical
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- health
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- instruct
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- finetune
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---
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# Mr. Grammatical Ontology: Anatomist
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This dataset was extracted from the [Web Ontology Language (OWL)](https://en.wikipedia.org/wiki/Web_Ontology_Language)
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[representation](http://purl.org/sig/ont/fma.owl) of the [Foundational Model of Anatomy](http://si.washington.edu/projects/fma) [1] using
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[Owlready2](https://owlready2.readthedocs.io/en/v0.47/#) to facilitate the extraction of the logical axioms in the FMA
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into a Controlled Natural Language (CNL) for use in training Medical Large Language Models to be conversant in
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canonical human anatomy.
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It includes full definition instructions such as the following, generated from the logical axioms of the FMA ontology:
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```json
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{"input": "What is the Cardiac vein?",
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"output": "The Cardiac vein is defined in the Foundational Model Anatomy (FMA) as a systemic vein. It is a compositionally distinct anatomical element of a heart. It is the venous drainage of a left ventricle, a wall of right side of heart, a wall of left side of heart, a wall of biventricular part of heart, a free wall of left ventricle, a myocardium of basal zone of left ventricle, a myocardium of mid zone of left ventricle, a myocardium of apical zone of left ventricle, a myocardial zone 17, a septal wall of left ventricle, a myocardium, an anterior wall of left ventricle, an inferior wall of left ventricle, and a lateral wall of left ventricle"}
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```
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As well as fine-grained definition instructions such as:
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```json
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{"input": "What is the Cardiac vein a compositionally distinct anatomical element of?",
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"output": "It is a compositionally distinct anatomical element of a heart"}
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```
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The full definition instructions for _15,807 FMA_ terms were extracted into *train.json* and _4,807_ fine-grained
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definition instructions were extracted into *valid.json*
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[1] __Rosse, Cornelius, and José LV Mejino Jr. "A reference ontology for biomedical informatics: the Foundational Model of Anatomy." Journal of biomedical informatics 36.6 (2003): 478-500.__
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