More formatting
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demo/HF_TCM+P3GPT_sceening.ipynb
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@@ -300,11 +300,11 @@
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" 'CD86', 'AURKA', 'IL2', 'F2', 'IDO1',\n",
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" 'IL4', 'RPS6KB1','ABAT', 'CCL3','STAT1',\n",
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" 'CD80', 'IL5', 'IL6'],\n",
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"
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"
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" 'predicted_targets': {'symbols': ['IFNG', 'PTGS1', 'PTGS2', 'TPMT'],\n",
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" 'entrez_ids': [3458, 5742, 5743, 7172]}})"
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@@ -420,7 +420,7 @@
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"id": "c9817c0b-51f2-4b7a-913c-9741345f1895",
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"metadata": {},
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"source": [
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"We can now zoom in on the
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"\n",
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"Out of all 659 TCM compounds, the targets of 424 of them significantly overlapped with an aging aging signature.\n",
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"Let's trim the table of significant enrichments even further by considering only the documented targets. \n",
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" 'CD86', 'AURKA', 'IL2', 'F2', 'IDO1',\n",
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" 'IL4', 'RPS6KB1','ABAT', 'CCL3','STAT1',\n",
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" 'CD80', 'IL5', 'IL6'],\n",
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" 'entrez_ids': [18, 3565, 4790, 836, 3551,\n",
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" 3620, 6772, 718, 2147, 3558,\n",
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" 3569, 6347, 6356, 727, 6790,\n",
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" 3567, 942, 6348, 10215, 6198,\n",
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" 5550, 1232, 941]},\n",
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" 'predicted_targets': {'symbols': ['IFNG', 'PTGS1', 'PTGS2', 'TPMT'],\n",
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" 'entrez_ids': [3458, 5742, 5743, 7172]}})"
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]
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"id": "c9817c0b-51f2-4b7a-913c-9741345f1895",
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"metadata": {},
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"source": [
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"We can now zoom in on the compounds that passed the test.\n",
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"\n",
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"Out of all 659 TCM compounds, the targets of 424 of them significantly overlapped with an aging aging signature.\n",
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"Let's trim the table of significant enrichments even further by considering only the documented targets. \n",
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