convert.log

(python39) farrell@helios:/vol/biodata/data$ python convert.py 
  3%|████▉                                                                                                                                                          | 13/422 [01:11<37:25,  5.49s/it]Slice increment not consistent through all slices
---------------------------------------------------------
[-250.112 -250.112  -61.9  ] [ 0.  0. -6.]
[-250.112 -250.112  -58.9  ] [ 0.  0. -3.]
Instance Number: 70
---------------------------------------------------------
Traceback (most recent call last):
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dir.py", line 85, in convert_directory
    convert_dicom.dicom_array_to_nifti(dicom_input, nifti_file, reorient)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dicom.py", line 117, in dicom_array_to_nifti
    results = convert_generic.dicom_to_nifti(dicom_list, output_file)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_generic.py", line 132, in dicom_to_nifti
    common.validate_slice_increment(dicom_input)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/common.py", line 873, in validate_slice_increment
    raise ConversionValidationError('SLICE_INCREMENT_INCONSISTENT')
dicom2nifti.exceptions.ConversionValidationError: SLICE_INCREMENT_INCONSISTENT
  5%|███████▌                                                                                                                                                       | 20/422 [01:43<34:03,  5.08s/it]Slice increment not consistent through all slices
---------------------------------------------------------
[-250.112 -250.112   67.1  ] [ 0.  0. -3.]
[-250.112 -250.112   73.1  ] [ 0.  0. -6.]
Instance Number: 81
---------------------------------------------------------
Traceback (most recent call last):
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dir.py", line 85, in convert_directory
    convert_dicom.dicom_array_to_nifti(dicom_input, nifti_file, reorient)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dicom.py", line 117, in dicom_array_to_nifti
    results = convert_generic.dicom_to_nifti(dicom_list, output_file)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_generic.py", line 132, in dicom_to_nifti
    common.validate_slice_increment(dicom_input)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/common.py", line 873, in validate_slice_increment
    raise ConversionValidationError('SLICE_INCREMENT_INCONSISTENT')
dicom2nifti.exceptions.ConversionValidationError: SLICE_INCREMENT_INCONSISTENT
 20%|███████████████████████████████▋                                                                                                                               | 84/422 [07:47<34:41,  6.16s/it]Slice increment not consistent through all slices
---------------------------------------------------------
[-250.112 -250.112 -700.9  ] [ 0.  0. -3.]
[-250.112 -250.112 -694.9  ] [ 0.  0. -6.]
Instance Number: 100
---------------------------------------------------------
Traceback (most recent call last):
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dir.py", line 85, in convert_directory
    convert_dicom.dicom_array_to_nifti(dicom_input, nifti_file, reorient)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dicom.py", line 117, in dicom_array_to_nifti
    results = convert_generic.dicom_to_nifti(dicom_list, output_file)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_generic.py", line 132, in dicom_to_nifti
    common.validate_slice_increment(dicom_input)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/common.py", line 873, in validate_slice_increment
    raise ConversionValidationError('SLICE_INCREMENT_INCONSISTENT')
dicom2nifti.exceptions.ConversionValidationError: SLICE_INCREMENT_INCONSISTENT
 22%|███████████████████████████████████▍                                                                                                                           | 94/422 [08:43<31:14,  5.71s/it]Slice increment not consistent through all slices
---------------------------------------------------------
[-250.112 -250.112 -331.6  ] [ 0.  0. -3.]
[-250.112 -250.112 -329.6  ] [ 0.  0. -2.]
Instance Number: 100
---------------------------------------------------------
Traceback (most recent call last):
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dir.py", line 85, in convert_directory
    convert_dicom.dicom_array_to_nifti(dicom_input, nifti_file, reorient)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dicom.py", line 117, in dicom_array_to_nifti
    results = convert_generic.dicom_to_nifti(dicom_list, output_file)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_generic.py", line 132, in dicom_to_nifti
    common.validate_slice_increment(dicom_input)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/common.py", line 873, in validate_slice_increment
    raise ConversionValidationError('SLICE_INCREMENT_INCONSISTENT')
dicom2nifti.exceptions.ConversionValidationError: SLICE_INCREMENT_INCONSISTENT
 46%|████████████████████████████████████████████████████████████████████████▎                                                                                     | 193/422 [18:04<21:14,  5.56s/it]Slice increment not consistent through all slices
---------------------------------------------------------
[-250.112 -250.112 -532.5  ] [ 0.  0. -3.]
[-250.112 -250.112 -526.5  ] [ 0.  0. -6.]
Instance Number: 112
---------------------------------------------------------
Traceback (most recent call last):
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dir.py", line 85, in convert_directory
    convert_dicom.dicom_array_to_nifti(dicom_input, nifti_file, reorient)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_dicom.py", line 117, in dicom_array_to_nifti
    results = convert_generic.dicom_to_nifti(dicom_list, output_file)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/convert_generic.py", line 132, in dicom_to_nifti
    common.validate_slice_increment(dicom_input)
  File "/vol/medic01/users/bh1511/_venv/python39/lib/python3.9/site-packages/dicom2nifti/common.py", line 873, in validate_slice_increment
    raise ConversionValidationError('SLICE_INCREMENT_INCONSISTENT')
dicom2nifti.exceptions.ConversionValidationError: SLICE_INCREMENT_INCONSISTENT
 58%|███████████████████████████████████████████████████████████████████████████████████████████▋                                                                  | 245/422 [22:41<17:21,  5.88s/it]Removing duplicate slice from series
100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 422/422 [39:52<00:00,  5.67s/it]
(python39) farrell@helios:/vol/biodata/data$