input_ids
sequence
attention_mask
sequence
answer
stringlengths
1
933
start_positions
int64
157
69k
end_positions
int64
184
69.1k
token_type_ids
sequence
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n the southern hemisphere between Madagascar and Mauritius in the Indian Ocean (Latitude: 21°05.2920 S Longitude: 55°36.4380 E.)
2,397
2,525
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NK cells (CD3-/CD16+/CD56+)
19,410
19,437
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for 24 h
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Established hospital surveillance systems that are in place for influenza and other diseases in Europe may be expanded for this purpose. In addition, a number of countries in Europe are adapting and, in some cases, already using existing sentinel primary care based surveillance systems for influenza to detect community transmission of SARS-CoV-2
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the cells release antiviral factors and cytokines that alter local airway inflammation and airway niche
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type 40 and 41
4,718
4,732
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All influenza A pandemics since that time, and indeed almost all cases of influenza A worldwide (except- ing human infections from avian Viruses such as H5N1 and H7N7), have been caused by descendants of the 1918 Virus, including “drifted” H1N1 Viruses and reassorted H2N2 and H3N2 Viruses.
1,439
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baculovirus-derived recombinant HA vaccine was approved for human use and was first available for use in the United States for the 2013-2014 influenza season
19,506
19,663
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state of constant oxidative stress
32,365
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an emerging field engaged in cataloguing and characterising this biodiversity through a global consortium.
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a confirmed case included any person whose sample was RT-PCR positive for MERS-CoV, or who produced a seroconversion, irrespective of clinical signs and symptoms.
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to repeat this study every 3 or 5 years adding clinical data to monitor the evolution of respiratory pathogens in Réunion Island over time.
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The incidence in high-income countries is estimated at 0.015 episodes per child year, compared to 0.22 episodes per child year in low-and middle-income countries [3] . On average, 1 in 66 children in high-income countries is affected by pneumonia per year, compared to 1 in 5 children in low-and middle-income countries.
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the antiproliferative effect of a copper (II) complex on HT-29 colon cancer cells
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as a revolutionary gene-editing biotechnology in plants and animals.
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Of the remaining 29, 20 reported fever, 14 reported cough and eight reported weakness. Additional symptoms reported included headaches (6 cases), sore throat (2), rhinorrhoea (2), shortness of breath (2), myalgia (1), diarrhoea (1) and nausea (1)
7,275
7,521
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heterophilically
6,940
6,956
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high mutation rate
6,483
6,501
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HAdV-55-induced severe ARDS has a very high mortality rate (80%) despite appropriate respiratory support.
13,514
13,619
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the transmissibility of SARS-CoV-2 might be higher than MERS in the Middle East countries, similar to SARS, but lower than MERS in the Republic of Korea.
17,978
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The occurrence, and to some extent the severity, of recur- rent annual outbreaks, are driven by Viral antigenic drift, with an antigenic variant Virus emerging to become domi- nant
11,043
11,223
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promote or effect degradation of mRNAs harbouring stem-loop structures
4,339
4,409
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from the Kerala isolate, which was associated with a A226V shift in E1 gene that represents a successful evolutionary adaptation in the mosquito vector similar to the ones observed in Reunion Island [
4,312
4,512
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there are also evidence of reduced type I (IFNβ) and III (IFNλ) interferon production due to type 2-skewed inflammation, which contributes to imperfect clearance of the virus resulting in persistence of viral components, or the live virus in the airway epithelium
17,454
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interferon-induced transmembrane
353
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11,463
11,481
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3.87 [3.01-4.66]
13,500
13,516
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the HA and NA antigens are replaced on the same schedule as the TIV
6,161
6,228
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Infectious cDNA clones
509
531
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E. coli is a commensal and lactic acid bacteria are present in most fermented food items and are therefore naturally present in the host. They are also a much safer option than traditional attenuated vaccines in children and immunecompromised people.
2,161
2,411
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serum antibodies
3,812
3,828
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emerging human pathogens that possess enormous genomes of up to several megabases in size encoding hundreds of proteins with unique and unknown functions.
7,673
7,827
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baseline and emergent resistance variants
14,415
14,456
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how recent models have expanded our appreciation of the mechanisms of viral-induced exacerbations.
1,539
1,637
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IFITM5 with FKBP11
1,807
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Recent advances in in vitro air-liquid interface 3D cultures, organoid cultures and the use of novel human and animal challenge models
835
969
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acute RTI
2,079
2,088
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forbid the display of sheep in the latter third of their pregnancy and require regular testing of animals for C. burnetii in petting zoos
29,345
29,482
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April
2,971
2,976
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capsid (C), membrane (premembrane [prM] and membrane [M] ), and envelope (E)
3,504
3,580
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RNA methylation machinery
4,453
4,478
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cytokine storm'
3,853
3,868
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within 1 day of identification
1,266
1,296
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Hantavirus of the family Bunyaviridae
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The resultant SL-SHC014-MA15 virus could indeed efficiently use human ACE2 and replicate in primary human airway cells to similar titres as epidemic strains of SARS-CoV. While SL-SHC014-MA15 can replicate efficiently in young and aged mouse lungs, infection was attenuated, and less virus antigen was present in the airway epithelium as compared to SARS MA15, which causes lethal outcomes in aged mice
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5,612
5,628
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the need to collect paired serum samples (in the acute and convalescent phases) from cases under investigation for confirmation to eliminate potential cross-reactivity from non-specific antibodies from past exposure and/or infection by other coronaviruses.
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18,093
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rRT-PCR test
13,059
13,071
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the region upstream of the ifitm5 gene lacks the interferon regulatory elements
6,335
6,414
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Mannose-binding lectin (MBL) is an innate immune receptor synthesised in the liver and secreted in the bloodstream in response to inflammation signal. MBL promotes pathogen elimination by opsonization and phagocytosis,
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3.7% [1.3%-9.7%]
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13,130
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above that for SARS-CoV
29,884
29,907
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to form a protein with an alpha-helix, following with a betasheet(s) containing six strands
13,069
13,160
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The single strongest risk factor for pneumonia is HIV infection, which is especially prevalent in children in sub-Saharan Africa. HIV-infected children have 6 times increased odds of developing severe pneumonia or of death compared to HIV-uninfected children
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using Autographa californica nuclear polyhedrosis virus (AcNPV) expressing the HA of PR8 under control of the CAG promoter (AcCAG-HA)
20,353
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post-transcriptionally control expression of crucial inflammatory factors in various tissues and their potential therapeutic applications
4,022
4,159
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Spo0A
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from November 2004 to November 2014
2,855
2,890
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10.8%
1,433
1,438
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the maximum tolerated size of the fused polypeptide, its copy number on the phage, and potentially, the structure of the displayed polypeptide.
5,607
5,750
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two to three million
919
939
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Currently, there are no approved vaccines or medications available for most of the respiratory viruses
3,172
3,274
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periodically taking time off
12,348
12,376
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15.0% (7.0 [18-19] million people)
12,685
12,719
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They act to stabilize the activation of aspects of the innate immune response and prevent excessive inflammation
11,508
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6 CoVs were known to infect human, including 2 αCoV (HCoV-229E and HKU-NL63) and 4 βCoV (HCoV-OC43 [
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In a large-scale clinical trial (STEP) of an Ad serotype 5 (AdHu5)-based HIV-1 vaccine, the vaccines showed a lack of efficacy and tended to increase the risk of HIV-1 infection in vaccine recipients who had pre-existing neutralizing antibodies to AdHu5 (
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in an urban cycle whereby the mosquito spreads the disease from an infected human to an uninfected human, following an epidemiological pattern similar to dengue fever
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fecal–oral contact
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a whole genome sequencing (WGS) approach for HMPV
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5,523
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We found the presence of 2019-nCoV in anal swabs and blood as well, and more anal swab positives than oral swab positives in a later stage of infection, suggesting shedding and thereby transmitted through oral–fecal route.
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HT-29 cells
19,277
19,288
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the study was stopped after interim analysis suggested the vaccine did not achieve efficacy and individuals with high preexisting Ad5 antibody titers might have an increased risk of acquiring HIV-1
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smokers were 1.4 times more likely (RR=1.4, 95% CI: 0.98–2.00) to have severe symptoms of COVID-19 and approximately 2.4 times more likely to be admitted to an ICU, need mechanical ventilation or die compared to non-smokers (RR=2.4, 95% CI: 1.43–4.04)
6,018
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underreporting as well as systematic and country-specific changes in testing
28,430
28,506
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due to new infections among naïve DC populations
42,006
42,054
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banning large gatherings and advising individuals not to socialize outside their households
6,147
6,238
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influenza is an acute respiratory disease
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several novel bat coronaviruses were isolated from Chinese horseshoe bats and the bat SARS-like or SL-CoV-WIV1 was able to use ACE2 from humans, civets and Chinese horseshoe bats for entry
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winter season during weeks 23 to 39 between June and September and summer season during the rest of the year.
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Constitutive immune processes can thus prohibit pathogen invasion, while induced responses, by definition, can only control infections post-hoc.
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-the black flying fox -in which the interferon pathway is always on, and another -the Egyptian fruit bat -in which this pathway is only activated during an infection.
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Disease outbreaks further reduce access to limited healthcare, which is increasingly disrupted by attacks on health facilities and the persistent overburdening of health systems.
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the marmoset an appropriate animal model for biodefense-related pathogens
19,511
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epigenetic modification such as DNA methylation
30,917
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inositolrequiring enzyme 1 (IRE1), protein kinase RNA-like ER kinase (PERK), and activating transcription factor 6 (ATF6)
31,128
31,249
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increase miR-125a and b, and miR-132 in COPD epithelium which inhibits A20 and MAVS; and p300 and IRF3, respectively, resulting in increased susceptibility to viral infections
30,018
30,193
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2012
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using genetics and pharmacological inhibition of the genes
34,177
34,235
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Coxiella burnetii (C. burnetii)
2,378
2,409
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respiratory syncytial virus
3,119
3,146
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zanamivir (Relenza) and oseltamivir (Tamiflu)
2,356
2,401
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transforming prothrombin directly into thrombin,
3,792
3,840
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Gram positive, anaerobic bacterium
433
467
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hemorrhagic fever with renal syndrome
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Prime-boost strategies, using DNA or protein immunization in conjunction with an adenovirus vaccine booster immunization
13,372
13,492
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the upper airway
5,318
5,334
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the average codon usage frequencies in the host genome
2,812
2,866
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