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README.md DELETED
@@ -1,164 +0,0 @@
1
- ---
2
- annotations_creators:
3
- - no-annotation
4
- language_creators:
5
- - found
6
- - machine-generated
7
- language:
8
- - en
9
- - pt
10
- license:
11
- - lgpl-3.0
12
- multilinguality:
13
- - multilingual
14
- - translation
15
- size_categories:
16
- - 100K<n<1M
17
- source_datasets:
18
- - extended|eli5
19
- task_categories:
20
- - text2text-generation
21
- task_ids:
22
- - abstractive-qa
23
- - closed-domain-qa
24
- pretty_name: AskDocs
25
- ---
26
-
27
- # Dataset Card for askD
28
-
29
- ## Table of Contents
30
- - [Table of Contents](#table-of-contents)
31
- - [Dataset Description](#dataset-description)
32
- - [Dataset Summary](#dataset-summary)
33
- - [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
34
- - [Languages](#languages)
35
- - [Dataset Structure](#dataset-structure)
36
- - [Data Instances](#data-instances)
37
- - [Data Fields](#data-fields)
38
- - [Data Splits](#data-splits)
39
- - [Dataset Creation](#dataset-creation)
40
- - [Curation Rationale](#curation-rationale)
41
- - [Source Data](#source-data)
42
- - [Annotations](#annotations)
43
- - [Personal and Sensitive Information](#personal-and-sensitive-information)
44
- - [Considerations for Using the Data](#considerations-for-using-the-data)
45
- - [Social Impact of Dataset](#social-impact-of-dataset)
46
- - [Discussion of Biases](#discussion-of-biases)
47
- - [Other Known Limitations](#other-known-limitations)
48
- - [Additional Information](#additional-information)
49
- - [Dataset Curators](#dataset-curators)
50
- - [Licensing Information](#licensing-information)
51
- - [Citation Information](#citation-information)
52
- - [Contributions](#contributions)
53
-
54
- ## Dataset Description
55
-
56
- - **Repository:** https://github.com/ju-resplande/askD
57
- - **Paper:**
58
- - **Leaderboard:**
59
- - **Point of Contact:**
60
-
61
- ### Dataset Summary
62
-
63
- [ELI5 dataset](https://huggingface.co/datasets/eli5) adapted on [Medical Questions (AskDocs)](https://www.reddit.com/r/AskDocs/) subreddit.
64
- We additionally translated to Portuguese and used <a href="https://github.com/LasseRegin/medical-question-answer-data"> external data from here<a>.
65
-
66
- ### Supported Tasks and Leaderboards
67
-
68
- [More Information Needed]
69
-
70
- ### Languages
71
-
72
- The language data in AskD is English (BCP-47 en) and Brazilian Portuguese (BCP-47 pt-BR)
73
-
74
- ## Dataset Structure
75
-
76
- ### Data Instances
77
-
78
- [More Information Needed]
79
-
80
- ### Data Fields
81
-
82
- [More Information Needed]
83
-
84
- ### Data Splits
85
-
86
- | | Train | Valid | Test | External |
87
- | ----- | ------ | ----- | ---- | -------- |
88
- | en | 24256 | 5198 | 5198 | 166804 |
89
- | pt | 24256 | 5198 | 5198 | 166804 |
90
-
91
-
92
- ## Dataset Creation
93
-
94
- ### Curation Rationale
95
-
96
- [More Information Needed]
97
-
98
- ### Source Data
99
-
100
- The dataset questions and answers span a period from January 2013 to December 2019.
101
-
102
- #### Initial Data Collection and Normalization
103
-
104
- [More Information Needed]
105
-
106
- #### Who are the source language producers?
107
-
108
- [More Information Needed]
109
-
110
- ### Annotations
111
-
112
- #### Annotation process
113
-
114
- [More Information Needed]
115
-
116
- #### Who are the annotators?
117
-
118
- [More Information Needed]
119
-
120
- ### Personal and Sensitive Information
121
-
122
- [More Information Needed]
123
-
124
- ## Considerations for Using the Data
125
-
126
- ### Social Impact of Dataset
127
-
128
- [More Information Needed]
129
-
130
- ### Discussion of Biases
131
-
132
- [More Information Needed]
133
-
134
- ### Other Known Limitations
135
-
136
- [More Information Needed]
137
-
138
- ## Additional Information
139
-
140
- ### Dataset Curators
141
-
142
- [More Information Needed]
143
-
144
- ### Licensing Information
145
-
146
- [More Information Needed]
147
-
148
- ### Citation Information
149
-
150
- ```bibtex
151
- @misc{Gomes20202,
152
- author = {GOMES, J. R. S.},
153
- title = {PLUE: Portuguese Language Understanding Evaluation},
154
- year = {2020},
155
- publisher = {GitHub},
156
- journal = {GitHub repository},
157
- howpublished = {\url{https://github.com/ju-resplande/askD}},
158
- commit = {42060c4402c460e174cbb75a868b429c554ba2b7}
159
- }
160
- ```
161
-
162
- ### Contributions
163
-
164
- Thanks to [@ju-resplande](https://github.com/ju-resplande) for adding this dataset.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
askD.py DELETED
@@ -1,108 +0,0 @@
1
- # coding=utf-8
2
- # Lint as: python3
3
- """AskDocs: A medical QA dataset."""
4
-
5
-
6
- import json
7
-
8
- import datasets
9
-
10
-
11
- logger = datasets.logging.get_logger(__name__)
12
-
13
- _CITATION = """\
14
- #TODO: citation
15
- }
16
- """
17
-
18
- _DESCRIPTION = """\
19
- #TODO: description
20
- """
21
-
22
-
23
- class AskDConfig(datasets.BuilderConfig):
24
- """BuilderConfig for AskD."""
25
-
26
- def __init__(self, **kwargs):
27
- """BuilderConfig for AskD.
28
- Args:
29
- **kwargs: keyword arguments forwarded to super.
30
- """
31
- super(AskDConfig, self).__init__(**kwargs)
32
-
33
-
34
- class AskD(datasets.GeneratorBasedBuilder):
35
- """AskDocs: A medical QA dataset."""
36
-
37
- VERSION = datasets.Version("0.0.0")
38
-
39
- BUILDER_CONFIGS = [
40
- AskDConfig(
41
- name="default",
42
- version=datasets.Version("0.0.0"),
43
- description="Default config",
44
- ),
45
- ]
46
-
47
- DEFAULT_CONFIG_NAME = "default"
48
-
49
- def _info(self):
50
- return datasets.DatasetInfo(
51
- description=_DESCRIPTION,
52
- features=datasets.Features(
53
- {
54
- "q_id": datasets.Value("string"),
55
- "title": datasets.Value("string"),
56
- "selftext": datasets.Value("string"),
57
- "document": datasets.Value("string"),
58
- "subreddit": datasets.Value("string"),
59
- "answers": {
60
- "a_id": datasets.features.Sequence(datasets.Value("string")),
61
- "text": datasets.features.Sequence(datasets.Value("string")),
62
- "score": datasets.features.Sequence(datasets.Value("int32")),
63
- },
64
- "title_urls": datasets.features.Sequence(datasets.Value("string")),
65
- "selftext_urls": datasets.features.Sequence(
66
- datasets.Value("string")
67
- ),
68
- "answers_urls": datasets.features.Sequence(datasets.Value("string")),
69
- }
70
- ),
71
- supervised_keys=None,
72
- citation=_CITATION,
73
- )
74
-
75
- def _split_generators(self, dl_manager):
76
- _URL = "https://github.com/ju-resplande/askD/releases/download/v0.0.0/"
77
- _SPLITS = [
78
- "train",
79
- "validation",
80
- "test",
81
- "external"
82
- ]
83
- _LANGS = [
84
- "pt",
85
- "en"
86
- ]
87
- _URLS = {
88
- f"{split}_{lang}": f"{_URL}{split}_{lang}.json"
89
- for split in _SPLITS
90
- for lang in _LANGS
91
- }
92
-
93
- downloaded_files = dl_manager.download_and_extract(_URLS)
94
-
95
- return [
96
- datasets.SplitGenerator(
97
- name=datasets.Split(key),
98
- gen_kwargs={"filepath": downloaded_files[key]},
99
- )
100
- for key in downloaded_files
101
- ]
102
-
103
- def _generate_examples(self, filepath):
104
- logger.info("generating examples from = %s", filepath)
105
- with open(filepath, encoding="utf-8") as f:
106
- example = json.load(f)
107
- for id_, row in enumerate(example):
108
- yield id_, row
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
data_prepro.ipynb DELETED
@@ -1,146 +0,0 @@
1
- {
2
- "cells": [
3
- {
4
- "cell_type": "code",
5
- "execution_count": 1,
6
- "metadata": {},
7
- "outputs": [],
8
- "source": [
9
- "from pprint import pprint\n",
10
- "from tqdm import tqdm\n",
11
- "import json"
12
- ]
13
- },
14
- {
15
- "cell_type": "code",
16
- "execution_count": 8,
17
- "metadata": {},
18
- "outputs": [],
19
- "source": [
20
- "with open('data/askd_pt.json') as f:\n",
21
- " pt = json.load(f)\n",
22
- "\n",
23
- "dataset = dict()\n",
24
- "dataset['train_pt'] = pt['train_askd']\n",
25
- "dataset['validation_pt'] = pt['validation_askd']\n",
26
- "dataset['test_pt'] = pt['test_askd']\n",
27
- "\n",
28
- "with open('data/askd_en_augmented.json') as f:\n",
29
- " en = json.load(f)\n",
30
- "\n",
31
- "dataset['train_en'] = en['train_askd']\n",
32
- "dataset['validation_en'] = en['validation_askd']\n",
33
- "dataset['test_en'] = en['test_askd']"
34
- ]
35
- },
36
- {
37
- "cell_type": "code",
38
- "execution_count": 9,
39
- "metadata": {},
40
- "outputs": [],
41
- "source": [
42
- "for split in dataset:\n",
43
- " for item in dataset[split]:\n",
44
- " for key in [\"selftext_urls\", \"title_urls\", \"answers_urls\"]:\n",
45
- " if not isinstance(item[key], list):\n",
46
- " item[key] = [item[key]]\n",
47
- " \n",
48
- " for key in [\"a_id\", \"score\", \"text\"]:\n",
49
- " if not isinstance(item['answers'][key], list):\n",
50
- " item['answers'][key] = [item['answers'][key]]"
51
- ]
52
- },
53
- {
54
- "cell_type": "code",
55
- "execution_count": 10,
56
- "metadata": {},
57
- "outputs": [
58
- {
59
- "name": "stderr",
60
- "output_type": "stream",
61
- "text": [
62
- "100%|██████████| 24256/24256 [00:00<00:00, 1048176.28it/s]\n",
63
- "100%|██████████| 5198/5198 [00:00<00:00, 1092120.03it/s]\n",
64
- "100%|██████████| 5198/5198 [00:00<00:00, 1032878.16it/s]\n",
65
- "100%|██████████| 141019/141019 [13:54<00:00, 169.05it/s] \n",
66
- "100%|██████████| 30219/30219 [00:19<00:00, 1549.74it/s]\n",
67
- "100%|██████████| 30218/30218 [00:17<00:00, 1734.32it/s]\n"
68
- ]
69
- }
70
- ],
71
- "source": [
72
- "external_pt = list()\n",
73
- "external_en = list()\n",
74
- "\n",
75
- "for split in dataset:\n",
76
- " for item in tqdm(dataset[split].copy()):\n",
77
- " if item['answers']['a_id'] == ['0']:\n",
78
- " dataset[split].remove(item)\n",
79
- "\n",
80
- " if split.endswith('pt'):\n",
81
- " external_pt.append(item)\n",
82
- " else:\n",
83
- " external_en.append(item)\n",
84
- "\n",
85
- "dataset['external_en'] = external_en\n",
86
- "dataset['external_pt'] = external_pt"
87
- ]
88
- },
89
- {
90
- "cell_type": "code",
91
- "execution_count": 12,
92
- "metadata": {},
93
- "outputs": [],
94
- "source": [
95
- "for split in dataset:\n",
96
- " with open(f'data/{split}.json', 'w') as f:\n",
97
- " json.dump(dataset[split], f)"
98
- ]
99
- },
100
- {
101
- "cell_type": "code",
102
- "execution_count": 13,
103
- "metadata": {},
104
- "outputs": [
105
- {
106
- "data": {
107
- "text/plain": [
108
- "dict_keys(['train_pt', 'validation_pt', 'test_pt', 'train_en', 'validation_en', 'test_en', 'external_en', 'external_pt'])"
109
- ]
110
- },
111
- "execution_count": 13,
112
- "metadata": {},
113
- "output_type": "execute_result"
114
- }
115
- ],
116
- "source": [
117
- "dataset.keys()"
118
- ]
119
- }
120
- ],
121
- "metadata": {
122
- "interpreter": {
123
- "hash": "5550a332701dfaf727177dbb42680f614fbec3c4b4c54b659bea7821910aed98"
124
- },
125
- "kernelspec": {
126
- "display_name": "Python 3.9.7 ('base')",
127
- "language": "python",
128
- "name": "python3"
129
- },
130
- "language_info": {
131
- "codemirror_mode": {
132
- "name": "ipython",
133
- "version": 3
134
- },
135
- "file_extension": ".py",
136
- "mimetype": "text/x-python",
137
- "name": "python",
138
- "nbconvert_exporter": "python",
139
- "pygments_lexer": "ipython3",
140
- "version": "3.9.7"
141
- },
142
- "orig_nbformat": 4
143
- },
144
- "nbformat": 4,
145
- "nbformat_minor": 2
146
- }
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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