README.md

---

task_categories:
- image-classification
- image-segmentation
- feature-extraction
- zero-shot-classification
- fill-mask
size_categories:
- 10K<n<100K
tags:
  - biology
  - cells
  - radiation
  - microscopy
  - GeneLab
---

# Dataset Card for Dataset GeneLab_BPS_BenchmarkData

## Dataset Details

This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/

Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.

### Dataset Description

- **Curated by:** Frank Soboczenski
- **Funded by [optional]:** [More Information Needed]
- **Shared by [optional]:** [More Information Needed]
- **Language(s) (NLP):** [More Information Needed]
- **License:** There are no restrictions on the use of this data.

## Further Documentation

https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub

### Update Frequency

New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available.

## Dataset Structure

GeneLab_BPS_BenchmarkData/<br>
├── README.md<br>
└── data/<br>
    ├── High_Energy_Ion_Fe_Nuclei/<br>
    │   └── .tif<br>
    │   └── ...<br>
    └── XRay_irradiated_Nucleiation/<br>
        └── .tif<br>
        └── ...<br>

## How to Cite

Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData

## Publications

 - Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes
 - NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative
   
## Dataset Card Authors [optional]

Lauren Sanders (lauren.m.sanders@nasa.gov)

## Dataset Card Contact

Frank Soboczenski (Frank.Soboczenski@york.ac.uk)