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Update README.md
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README.md
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- Amgad, Mohamed, et al. "NuCLS: A Scalable Crowdsourcing Approach and Dataset for Nucleus Classification and Segmentation in Breast Cancer." GigaScience, vol. 11, 2022, https://doi.org/10.1093/gigascience/giac037. Accessed 18 Mar. 2024.
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![](https://huggingface.co/datasets/minhanhto09/NuCLS_dataset/resolve/main/fig1.PNG)
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## Accessing the Data
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- `mask_image`: A mask image with each nucleus labeled. Class labels are encoded in the first channel. The second and third channels are used to create a unique identifier for each nucleus. The field of view (gray area) is marked to delineate the annotated region.
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[This file](https://
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- `visualization_image`: A visualization image that overlays the RGB and mask images to assist in interpretability.
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- `coords_x`, `coords_y`: The specific boundary coordinates of the nucleus.
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![](https://huggingface.co/datasets/minhanhto09/NuCLS_dataset/resolve/main/
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### Data Split
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- `train_fold_999`: 21 examples
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- `test_fold_999`: 7 examples
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## Usage Example
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- Amgad, Mohamed, et al. "NuCLS: A Scalable Crowdsourcing Approach and Dataset for Nucleus Classification and Segmentation in Breast Cancer." GigaScience, vol. 11, 2022, https://doi.org/10.1093/gigascience/giac037. Accessed 18 Mar. 2024.
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![](https://huggingface.co/datasets/minhanhto09/NuCLS_dataset/resolve/main/Images/fig1.PNG)
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## Accessing the Data
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- `mask_image`: A mask image with each nucleus labeled. Class labels are encoded in the first channel. The second and third channels are used to create a unique identifier for each nucleus. The field of view (gray area) is marked to delineate the annotated region.
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[This file](https://huggingface.co/datasets/minhanhto09/NuCLS_dataset/resolve/main/Images/fig2.png) contains the nucleus label encoding, including a special 'fov' code encoding the intended annotation region.
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- `visualization_image`: A visualization image that overlays the RGB and mask images to assist in interpretability.
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- `coords_x`, `coords_y`: The specific boundary coordinates of the nucleus.
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![](https://huggingface.co/datasets/minhanhto09/NuCLS_dataset/resolve/main/Images/fig3.jpeg)
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### Data Split
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- `train_fold_999`: 21 examples
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- `test_fold_999`: 7 examples
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Note that the debug configuration utilizes these particular folds `train_fold_999` and `test_fold_999` due to their smaller numbers of examples.
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## Usage Example
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