Add Megatests Data

testdata/mega/.gitignore

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+*.zip
+datasets
+*.fastq

testdata/mega/SRR443366.fastq.gz

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+version https://git-lfs.github.com/spec/v1
+oid sha256:48d01a664fb1180f555228e81b1b8e969a9d8c2684af139d8f7379d0d3a2ca55
+size 2919077923

testdata/mega/SRR443367.fastq.gz

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+version https://git-lfs.github.com/spec/v1
+oid sha256:5338f3859a25ac5dd7e93cbeaf6b5470ddb6eda27795cecc9afeca1a44710dd0
+size 3496764017

testdata/mega/SRR443368.fastq.gz

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+version https://git-lfs.github.com/spec/v1
+oid sha256:6352370f66dc2b35739db06d47a33992a23c2f6ec53f078176e5482663c65f57
+size 3143055477

testdata/mega/download.sh

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+#!/usr/bin/env nix-shell
+#! nix-shell -i bash --pure
+#! nix-shell -p bash sratoolkit curl unzip
+
+# GENOMES:
+# Lc. mesenteroides https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_009913915.1/
+# Lb. sakei subsp. sakei 23K https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000026065.1/
+# W. koreensis KACC 15510 https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000219805.1/
+# Lc. gasicomitatum LMG 18811 https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000196855.1/
+# RAW READS:
+# J7, https://www.ncbi.nlm.nih.gov/sra/SRX128699[accn]
+# J13, https://www.ncbi.nlm.nih.gov/sra/SRX128700[accn]
+# J18, https://www.ncbi.nlm.nih.gov/sra/SRX128702[accn]
+
+fasterq-dump --split-3 SRR443366
+fasterq-dump --split-3 SRR443367
+fasterq-dump --split-3 SRR443368
+
+gzip *.fastq
+
+curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/v2/linux-amd64/datasets'
+chmod +x datasets
+
+./datasets download genome accession GCF_009913915.1 --filename GCF_009913915.1.zip
+./datasets download genome accession GCF_000026065.1 --filename GCF_000026065.1.zip
+./datasets download genome accession GCF_000219805.1 --filename GCF_000219805.1.zip
+./datasets download genome accession GCF_000196855.1 --filename GCF_000196855.1.zip
+
+mkdir genomes
+for i in *.zip; do unzip -j $i ncbi_dataset/data/*/*.fna -d genomes; done