Hugging Face's logo

Datasets:
nf-core
/
magmap

Dataset card Files Community
JIANHONG OU commited on
Commit
c323f9f
•
1 Parent(s): dcbb511

Revert "add test dataset for hicar"

Browse files
Files changed (18) hide show
  1. README.md +0 -12
  2. data/genomics/homo_sapiens/T1/KD_rep1_R1.fastq.gz +0 -3
  3. data/genomics/homo_sapiens/T1/KD_rep1_R2.fastq.gz +0 -3
  4. data/genomics/homo_sapiens/T1/KD_rep2_R1.fastq.gz +0 -3
  5. data/genomics/homo_sapiens/T1/KD_rep2_R2.fastq.gz +0 -3
  6. data/genomics/homo_sapiens/T1/WT_rep1_R1.fastq.gz +0 -3
  7. data/genomics/homo_sapiens/T1/WT_rep1_R2.fastq.gz +0 -3
  8. data/genomics/homo_sapiens/T1/WT_rep2_R1.fastq.gz +0 -3
  9. data/genomics/homo_sapiens/T1/WT_rep2_R2.fastq.gz +0 -3
  10. data/genomics/homo_sapiens/T2/KD_rep1_R1.fastq.gz +0 -3
  11. data/genomics/homo_sapiens/T2/KD_rep1_R2.fastq.gz +0 -3
  12. data/genomics/homo_sapiens/T2/KD_rep2_R1.fastq.gz +0 -3
  13. data/genomics/homo_sapiens/T2/KD_rep2_R2.fastq.gz +0 -3
  14. data/genomics/homo_sapiens/T2/WT_rep1_R1.fastq.gz +0 -3
  15. data/genomics/homo_sapiens/T2/WT_rep1_R2.fastq.gz +0 -3
  16. data/genomics/homo_sapiens/T2/WT_rep2_R1.fastq.gz +0 -3
  17. data/genomics/homo_sapiens/T2/WT_rep2_R2.fastq.gz +0 -3
  18. data/genomics/homo_sapiens/mappability/wgEncodeCrgMapabilityAlign50mer.chr22.bigWig +0 -3
README.md CHANGED
@@ -14,15 +14,3 @@ nf-core/test-datasets comes with documentation in the `docs/` directory:
14
  ## Support
15
 
16
  For further information or help, don't hesitate to get in touch on our [Slack organisation](https://nf-co.re/join/slack) (a tool for instant messaging).
17
-
18
- ## About this dataset
19
-
20
- This small dataset contains reads from human chr22
21
-
22
- * data/genomics/homo_sapiens/T1: technique replicates1 (real data)
23
- * WT: wild type HiCAR reads
24
- * KD: knock-down HiCAR reads
25
- * data/genomics/homo_sapiens/T2: technique replicates1 (simulated data)
26
- * WT: wild type HiCAR reads
27
- * KD: knock-down HiCAR reads
28
- * data/genomics/homo_sapiens/mappability/wgEncodeCrgMapabilityAlign50mer.chr22.bigWig: mappability of chr22.
 
14
  ## Support
15
 
16
  For further information or help, don't hesitate to get in touch on our [Slack organisation](https://nf-co.re/join/slack) (a tool for instant messaging).
 
 
 
 
 
 
 
 
 
 
 
 
data/genomics/homo_sapiens/T1/KD_rep1_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:05510c4e57f17af7200a9f0a1700d239a1f0ece0e644a65de416d62d35b48baf
3
- size 30143920
 
 
 
 
data/genomics/homo_sapiens/T1/KD_rep1_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:7861c88f8a455e0f861fe1c214d32ed5336b670582cbae739129c63447fcfe38
3
- size 35476121
 
 
 
 
data/genomics/homo_sapiens/T1/KD_rep2_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:e8b1d4b7754ffb057e9a489fe4684498b421aab4e619ca843fd150bd2fef27f0
3
- size 30152404
 
 
 
 
data/genomics/homo_sapiens/T1/KD_rep2_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:2a32d49e1d49309a251f08b316b0e1c4e277434fdedc3336bb86020d21ef4c68
3
- size 35480942
 
 
 
 
data/genomics/homo_sapiens/T1/WT_rep1_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:05e0ef56eaf7ed98f1a5e56921248104fa8cd0a33644f308fd7e31f490e32bbd
3
- size 34240701
 
 
 
 
data/genomics/homo_sapiens/T1/WT_rep1_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:99d622775483ad74d51c33d89b32376e05a41b688f6365996bd1ca92787e7744
3
- size 40306888
 
 
 
 
data/genomics/homo_sapiens/T1/WT_rep2_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:83a757077f434bdaffa9f97c1d52f0a27bb6eef058bf50669cedd32e230d7d7b
3
- size 34242312
 
 
 
 
data/genomics/homo_sapiens/T1/WT_rep2_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:216e14376c0881221d3e0aedceb3e8f676b335da25660e63637450dd5c30bfe7
3
- size 40302091
 
 
 
 
data/genomics/homo_sapiens/T2/KD_rep1_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:8e399ea86858bd128ee706ee021b38638e9d2d376e5fa2ea60ba001c00c3f7dd
3
- size 2004286
 
 
 
 
data/genomics/homo_sapiens/T2/KD_rep1_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:e9e401dfd53cb56b7ab2ef45867867247074cf0927eb3c787e72aeb34e0494e9
3
- size 2101319
 
 
 
 
data/genomics/homo_sapiens/T2/KD_rep2_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:2e5f134c3b741a11ea72e4e86c9590a6edafd7c343d643b8939214b95b4984c8
3
- size 1115725
 
 
 
 
data/genomics/homo_sapiens/T2/KD_rep2_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:558c6336eaedb52ddd7d68420fc5bddc035e0f801629d9e4b6c7c248e4b02576
3
- size 1158133
 
 
 
 
data/genomics/homo_sapiens/T2/WT_rep1_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:e9ee0649baf777fa26d821996333193c819148ffee10b34a10636f56d69752ff
3
- size 3111807
 
 
 
 
data/genomics/homo_sapiens/T2/WT_rep1_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:79e795b2ba1e9be7e42ff59a48a84e9d5c9bd4da455a2e90d44c1a188113fa52
3
- size 3291688
 
 
 
 
data/genomics/homo_sapiens/T2/WT_rep2_R1.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:a273abb9f68a3ae6cf37ef731c576494555d9a3f85c63e26730ca4efccfd4262
3
- size 3406080
 
 
 
 
data/genomics/homo_sapiens/T2/WT_rep2_R2.fastq.gz DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:e51265a57193d860aa2312e97c2ed428934bcd2ac0d31b7211197eec7920b9be
3
- size 3632050
 
 
 
 
data/genomics/homo_sapiens/mappability/wgEncodeCrgMapabilityAlign50mer.chr22.bigWig DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:7f0fa0bc47e6911d64a8c70d95e311b466df908729ce02eb1f047d593d1fc708
3
- size 15121611