from pytorch_ie.documents import TextDocumentWithLabeledSpansAndBinaryRelations from pie_datasets.builders import BratBuilder, BratConfig from pie_datasets.builders.brat import BratDocumentWithMergedSpans URL = "https://gitlab.com/tomaye/abstrct/-/archive/master/abstrct-master.zip" SPLIT_PATHS = { "neoplasm_train": "abstrct-master/AbstRCT_corpus/data/train/neoplasm_train", "neoplasm_dev": "abstrct-master/AbstRCT_corpus/data/dev/neoplasm_dev", "neoplasm_test": "abstrct-master/AbstRCT_corpus/data/test/neoplasm_test", "glaucoma_test": "abstrct-master/AbstRCT_corpus/data/test/glaucoma_test", "mixed_test": "abstrct-master/AbstRCT_corpus/data/test/mixed_test", } class AbstRCT(BratBuilder): BASE_DATASET_PATH = "DFKI-SLT/brat" BASE_DATASET_REVISION = "bb8c37d84ddf2da1e691d226c55fef48fd8149b5" BUILDER_CONFIGS = [ BratConfig(name=BratBuilder.DEFAULT_CONFIG_NAME, merge_fragmented_spans=True), ] DOCUMENT_TYPES = { BratBuilder.DEFAULT_CONFIG_NAME: BratDocumentWithMergedSpans, } # we need to add None to the list of dataset variants to support the default dataset variant BASE_BUILDER_KWARGS_DICT = { dataset_variant: {"url": URL, "split_paths": SPLIT_PATHS} for dataset_variant in ["default", None] } DOCUMENT_CONVERTERS = { TextDocumentWithLabeledSpansAndBinaryRelations: { "spans": "labeled_spans", "relations": "binary_relations", }, }