diff --git "a/processed_kz_topics.jsonl" "b/processed_kz_topics.jsonl" new file mode 100644--- /dev/null +++ "b/processed_kz_topics.jsonl" @@ -0,0 +1,60 @@ +{"id": "20141", "raw_text": "A 58-year-old African-American woman presents to the ER with episodic pressing/burning anterior chest pain that began two days earlier for the first time in her life. The pain started while she was walking, radiates to the back, and is accompanied by nausea, diaphoresis and mild dyspnea, but is not increased on inspiration. The latest episode of pain ended half an hour prior to her arrival. She is known to have hypertension and obesity. She denies smoking, diabetes, hypercholesterolemia, or a family history of heart disease. She currently takes no medications. Physical examination is normal. The EKG shows nonspecific changes.", "text_sents": ["A 58-year-old African-American woman presents to the ER with episodic pressing/burning anterior chest pain that began two days earlier for the first time in her life.", "The pain started while she was walking, radiates to the back, and is accompanied by nausea, diaphoresis and mild dyspnea, but is not increased on inspiration.", "The latest episode of pain ended half an hour prior to her arrival.", "She is known to have hypertension and obesity.", "She denies smoking, diabetes, hypercholesterolemia, or a family history of heart disease.", "She currently takes no medications.", "Physical examination is normal.", "The EKG shows nonspecific changes."], "filtered_sents": null, "ent_sents": [[["African-American", "ENTITY", 14, 30, {"val": "C0085756", "score": 1.0}, ["African American (ethnic group)", "United States Black"], false], ["woman", "ENTITY", 31, 36, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["ER", "ENTITY", 53, 55, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["episodic", "ENTITY", 61, 69, {"val": "C1455761", "score": 1.0}, ["Episodic", "Episodic (qualifier value)"], false], ["days", "ENTITY", 122, 126, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["life", "ENTITY", 161, 165, {"val": "C0376558", "score": 0.9999999403953552}, ["life", "Life"], false], ["pain", "ENTITY", 171, 175, {"val": "C0030193", "score": 1.0}, ["painful", "PAIN"], false], ["walking", "ENTITY", 198, 205, {"val": "C0080331", "score": 1.0}, ["walking", "Ambulation"], false], ["back", "ENTITY", 223, 227, {"val": "C0004600", "score": 1.0}, ["Back", "back anatomy"], false], ["nausea", "ENTITY", 251, 257, {"val": "C0027497", "score": 0.9999998807907104}, ["nausea symptoms", "nausea symptom"], false], ["diaphoresis", "ENTITY", 259, 270, {"val": "C0700590", "score": 1.0}, ["Profuse sweating", "increased sweating"], false], ["mild dyspnea", "ENTITY", 275, 287, {"val": "C0013404", "score": 0.8432778120040894}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["increased", "ENTITY", 300, 309, {"val": "C0205217", "score": 1.0}, ["increased", "augment"], true], ["inspiration", "ENTITY", 313, 324, {"val": "C0004048", "score": 1.0}, ["Inhaling", "inspiratory"], true], ["episode", "ENTITY", 337, 344, {"val": "C0332189", "score": 1.0}, ["Episodes (qualifier value)", "Episodes"], false], ["pain", "ENTITY", 348, 352, {"val": "C0030193", "score": 1.0}, ["painful", "PAIN"], false], ["hour", "ENTITY", 367, 371, {"val": "C0439227", "score": 1.0}, ["HOURS", "hour (qualifier value)"], false], ["arrival", "ENTITY", 385, 392, {"val": "C1555577", "score": 1.0}, ["arrival", "ActRelationshipArrival"], false], ["hypertension", "ENTITY", 415, 427, {"val": "C0020538", "score": 1.0}, ["Hypertension, arterial", "HYPERTENSION ARTERIAL"], false], ["obesity", "ENTITY", 432, 439, {"val": "C0028754", "score": 1.0}, ["Adiposity", "obese"], false], ["smoking", "ENTITY", 452, 459, {"val": "C0037369", "score": 1.0}, ["smoking", "smokings"], true], ["diabetes", "ENTITY", 461, 469, {"val": "C0011847", "score": 1.0}, ["Diabetes"], true], ["hypercholesterolemia", "ENTITY", 471, 491, {"val": "C0020443", "score": 1.0}, ["Elevated Cholesterol", "HYPERCHOLESTEREMIA"], true], ["family history of heart disease", "ENTITY", 498, 529, {"val": "C2186266", "score": 1.0}, [], true], ["medications", "ENTITY", 554, 565, {"val": "C0013227", "score": 1.0}, ["Pharmaceutical Products", "medicinal products"], true], ["Physical examination", "ENTITY", 567, 587, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["normal", "ENTITY", 591, 597, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["EKG", "ENTITY", 603, 606, {"val": "C0013798", "score": 1.0}, ["ekgs", "ecgs"], false], ["nonspecific", "ENTITY", 613, 624, {"val": "C0750540", "score": 1.0}, ["nonspecific"], false], ["changes", "ENTITY", 625, 632, {"val": "C0392747", "score": 1.0}, ["Adapted", "Changing"], false]]], "age": 58.0, "gender": "Female"} +{"id": "20142", "raw_text": "An 8-year-old male presents in March to the ER with fever up to 39 C, dyspnea and cough for 2 days. He has just returned from a 5 day vacation in Colorado. Parents report that prior to the onset of fever and cough, he had loose stools. He denies upper respiratory tract symptoms. On examination he is in respiratory distress and has bronchial respiratory sounds on the left. A chest x-ray shows bilateral lung infiltrates.", "text_sents": ["An 8-year-old male presents in March to the ER with fever up to 39 C, dyspnea and cough for 2 days.", "He has just returned from a 5 day vacation in Colorado.", "Parents report that prior to the onset of fever and cough, he had loose stools. He denies upper respiratory tract symptoms.", "On examination he is in respiratory distress and has bronchial respiratory sounds on the left.", "A chest x-ray shows bilateral lung infiltrates."], "filtered_sents": null, "ent_sents": [[["male", "ENTITY", 14, 18, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["ER", "ENTITY", 44, 46, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["fever", "ENTITY", 52, 57, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["C", "ENTITY", 67, 68, {"val": "C0007404", "score": 1.0}, ["Catechin-containing product", "Catechin (substance)"], false], ["dyspnea", "ENTITY", 70, 77, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["cough", "ENTITY", 82, 87, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["days", "ENTITY", 94, 98, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["day", "ENTITY", 130, 133, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["vacation", "ENTITY", 134, 142, {"val": "C0680199", "score": 1.0}, ["vacationing", "VACATION"], false], ["Colorado", "ENTITY", 146, 154, {"val": "C0009399", "score": 1.0}, ["Colorado (geographic location)", "colorado"], false], ["Parents", "ENTITY", 156, 163, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["fever", "ENTITY", 198, 203, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["cough", "ENTITY", 208, 213, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["loose stools", "ENTITY", 222, 234, {"val": "C0011991", "score": 1.0}, ["Diarrhea, NOS", "Diarrhea NOS"], false], ["upper respiratory tract", "ENTITY", 246, 269, {"val": "C0458578", "score": 1.0}, ["Upper respiratory tract, NOS", "Nose, accessory sinus and nasopharynx, CS"], true], ["symptoms", "ENTITY", 270, 278, {"val": "C0683368", "score": 0.9999998807907104}, ["symptoms"], true], ["examination", "ENTITY", 283, 294, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["respiratory distress", "ENTITY", 304, 324, {"val": "C0476273", "score": 1.0}, ["Breathing difficulties", "Respiratory distress"], false], ["bronchial", "ENTITY", 333, 342, {"val": "C0205039", "score": 1.0}, ["Bronchial", "bronchial"], false], ["respiratory sounds", "ENTITY", 343, 361, {"val": "C0035234", "score": 1.0}, ["RESPIRATORY SOUNDS AND MOVEMENTS", "breathing sounds"], false], ["left", "ENTITY", 369, 373, {"val": "C0205091", "score": 1.0}, ["Lt - Left", "Left"], false], ["chest x-ray", "ENTITY", 377, 388, {"val": "C0039985", "score": 1.0}, ["Chest Radiography", "thoracic x-ray"], false], ["bilateral", "ENTITY", 395, 404, {"val": "C0238767", "score": 1.0}, ["Right and Left", "Both sides"], false], ["lung infiltrates", "ENTITY", 405, 421, {"val": "C0235896", "score": 1.0}, ["PULMONARY INFILTRATE", "lung infiltration"], false]]], "age": 8.0, "gender": "Male"} +{"id": "20143", "raw_text": "A 58-year-old nonsmoker white female with mild exertional dyspnea and occasional cough is found to have a left lung mass on chest x-ray. She is otherwise asymptomatic. A neurologic examination is unremarkable, but a CT scan of the head shows a solitary mass in the right frontal lobe.", "text_sents": ["A 58-year-old nonsmoker white female with mild exertional dyspnea and occasional cough is found to have a left lung mass on chest x-ray.", "She is otherwise asymptomatic.", "A neurologic examination is unremarkable, but a CT scan of the head shows a solitary mass in the right frontal lobe."], "filtered_sents": null, "ent_sents": [[["nonsmoker", "ENTITY", 14, 23, {"val": "C0337672", "score": 1.0}, ["nonsmoker", "Non-smoker (finding)"], false], ["female", "ENTITY", 30, 36, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["occasional cough", "ENTITY", 70, 86, {"val": "C4086402", "score": 0.8683584928512573}, ["I have an occasional cough"], false], ["left lung mass", "ENTITY", 106, 120, {"val": "C0746117", "score": 0.9999999403953552}, ["left lung mass", "mass left lung"], false], ["chest x-ray", "ENTITY", 124, 135, {"val": "C0039985", "score": 1.0}, ["Chest Radiography", "thoracic x-ray"], false], ["asymptomatic", "ENTITY", 154, 166, {"val": "C0231221", "score": 1.0}, ["Asymptomatic (finding)", "Absence of symptoms"], false], ["neurologic examination", "ENTITY", 170, 192, {"val": "C0027853", "score": 1.0}, ["Neurologic Examination", "Neurological examination"], false], ["unremarkable", "ENTITY", 196, 208, {"val": "C0205307", "score": 0.9999998807907104}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["CT scan", "ENTITY", 216, 223, {"val": "C0040405", "score": 0.9999999403953552}, ["Computerized tomography", "cat scans"], false], ["head", "ENTITY", 231, 235, {"val": "C0018670", "score": 1.0}, ["Head structure (body structure)", "Head"], false], ["solitary mass", "ENTITY", 244, 257, {"val": "C1265601", "score": 1.0}, ["Solitary mass (morphologic abnormality)", "Solitary mass"], false], ["right frontal lobe", "ENTITY", 265, 283, {"val": "C0228193", "score": 1.0}, ["Right frontal lobe structure", "Right frontal lobe"], false]]], "age": 58.0, "gender": "Female"} +{"id": "20144", "raw_text": "A 2-year-old boy is brought to the emergency department by his parents for 5 days of high fever and irritability. The physical exam reveals conjunctivitis, strawberry tongue, inflammation of the hands and feet, desquamation of the skin of the fingers and toes, and cervical lymphadenopathy with the smallest node at 1.5 cm. The abdominal exam demonstrates tenderness and enlarged liver. Laboratory tests report elevated alanine aminotransferase, white blood cell count of 17,580/mm, albumin 2.1 g/dL, C-reactive protein 4.5 mg, erythrocyte sedimentation rate 60 mm/h, mild normochromic, normocytic anemia, and leukocytes in urine of 20/mL with no bacteria identified. The echocardiogram shows moderate dilation of the coronary arteries with possible coronary artery aneurysm.", "text_sents": ["A 2-year-old boy is brought to the emergency department by his parents for 5 days of high fever and irritability.", "The physical exam reveals conjunctivitis, strawberry tongue, inflammation of the hands and feet, desquamation of the skin of the fingers and toes, and cervical lymphadenopathy with the smallest node at 1.5 cm.", "The abdominal exam demonstrates tenderness and enlarged liver.", "Laboratory tests report elevated alanine aminotransferase, white blood cell count of 17,580/mm, albumin 2.1 g/dL, C-reactive protein 4.5 mg, erythrocyte sedimentation rate 60 mm/h, mild normochromic, normocytic anemia, and leukocytes in urine of 20/mL with no bacteria identified.", "The echocardiogram shows moderate dilation of the coronary arteries with possible coronary artery aneurysm."], "filtered_sents": null, "ent_sents": [[["boy", "ENTITY", 13, 16, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["emergency department", "ENTITY", 35, 55, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["parents", "ENTITY", 63, 70, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["days", "ENTITY", 77, 81, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["high fever", "ENTITY", 85, 95, {"val": "C0743973", "score": 1.0}, ["fever high", "fevers high"], false], ["irritability", "ENTITY", 100, 112, {"val": "C0022107", "score": 1.0}, ["irritability", "Mood, Irritable"], false], ["physical exam", "ENTITY", 118, 131, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["conjunctivitis", "ENTITY", 140, 154, {"val": "C0009763", "score": 0.9999999403953552}, ["conjunctiva inflammation", "conjunctivitis"], false], ["strawberry tongue", "ENTITY", 156, 173, {"val": "C0241262", "score": 1.0}, ["Tongue Strawberry", "STRAWBERRY TONGUE"], false], ["inflammation", "ENTITY", 175, 187, {"val": "C0021368", "score": 1.0}, ["Inflammatory reaction", "INFLAMMATION"], false], ["hands", "ENTITY", 195, 200, {"val": "C0018563", "score": 1.0}, ["Hand", "hand structure"], false], ["feet", "ENTITY", 205, 209, {"val": "C0016504", "score": 1.0}, ["Pedal", "Terminal segment of free lower limb"], false], ["desquamation", "ENTITY", 211, 223, {"val": "C0237849", "score": 1.0}, ["Desquamation, NOS", "skin flaking"], false], ["skin", "ENTITY", 231, 235, {"val": "C0444099", "score": 1.0}, ["Skin sample", "Skin specimen"], false], ["fingers", "ENTITY", 243, 250, {"val": "C0016129", "score": 1.0}, ["Fingers", "fingers"], false], ["toes", "ENTITY", 255, 259, {"val": "C0040357", "score": 1.0}, ["toes", "Digit of foot"], false], ["cervical lymphadenopathy", "ENTITY", 265, 289, {"val": "C0235592", "score": 1.0}, ["Cervical lymphadenopathy", "lymphadenopathy cervical"], false], ["node", "ENTITY", 308, 312, {"val": "C0746922", "score": 1.0}, ["nodes", "noded"], false], ["abdominal exam", "ENTITY", 328, 342, {"val": "C0000726", "score": 0.789198100566864}, ["Abdomen", "abd"], false], ["tenderness", "ENTITY", 356, 366, {"val": "C0234233", "score": 1.0}, ["soreness", "TENDERNESS (NOS)"], false], ["enlarged liver", "ENTITY", 371, 385, {"val": "C0019209", "score": 0.9999999403953552}, ["Large liver", "Enlargement of liver"], false], ["Laboratory tests report", "ENTITY", 387, 410, {"val": "C0587081", "score": 0.8569322228431702}, ["Laboratory test result", "Labs"], false], ["elevated", "ENTITY", 411, 419, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false], ["alanine aminotransferase", "ENTITY", 420, 444, {"val": "C0001899", "score": 1.0}, ["alanine aminotransferase", "alanine transaminase (ALT)"], false], ["white blood cell", "ENTITY", 446, 462, {"val": "C0023516", "score": 1.0}, ["WBC (white blood cell)", "Reticuloendothelial System, Leukocytes"], false], ["albumin", "ENTITY", 483, 490, {"val": "C0001924", "score": 1.0}, ["Albumin (substance)", "albumin"], false], ["C-reactive protein", "ENTITY", 501, 519, {"val": "C0006560", "score": 1.0}, ["Protein, C-Reactive", "c reactive protein"], false], ["erythrocyte", "ENTITY", 528, 539, {"val": "C0014792", "score": 0.9999999403953552}, ["Blood Cells, Red", "Red Blood Cells"], false], ["rate", "ENTITY", 554, 558, {"val": "C0871208", "score": 1.0}, ["Rated", "Rate"], false], ["normocytic anemia", "ENTITY", 587, 604, {"val": "C0085577", "score": 1.0}, ["Normocytic anaemia", "NORMOCYTIC ANEMIA"], false], ["leukocytes", "ENTITY", 610, 620, {"val": "C0023508", "score": 0.9999999403953552}, ["White blood cell count - observation", "Leukocyte Number"], false], ["urine", "ENTITY", 624, 629, {"val": "C0042036", "score": 0.9999998807907104}, ["Piss", "Urine (substance)"], false], ["bacteria", "ENTITY", 647, 655, {"val": "C0004611", "score": 1.0}, ["Unknown eubacteria", "Bacterium sp."], true], ["identified", "ENTITY", 656, 666, {"val": "C0205396", "score": 1.0}, ["Identification", "Identified"], true], ["echocardiogram", "ENTITY", 672, 686, {"val": "C0013516", "score": 1.0}, ["Echocardiography, Transthoracic", "echocardiography"], false], ["moderate", "ENTITY", 693, 701, {"val": "C0205081", "score": 1.0}, ["Moderately", "moderate"], false], ["dilation", "ENTITY", 702, 710, {"val": "C0012359", "score": 0.9999998807907104}, ["Dilation", "ectasias"], false], ["coronary arteries", "ENTITY", 718, 735, {"val": "C0205042", "score": 1.0}, ["Coronary artery, NOS", "Artery, Coronary"], false], ["coronary artery aneurysm", "ENTITY", 750, 774, {"val": "C0010051", "score": 1.0}, ["Coronary Aneurysm", "Aneurysm of coronary vessels"], false]]], "age": 2.0, "gender": "Male"} +{"id": "20145", "raw_text": "A 56-year-old female on 20th day post-left mastectomy presents to the emergency department complaining of shortness of breath and malaise. The patient says that she has remained in bed for the last two weeks. The physical examination reveals tenderness on the left upper thoracic wall and right calf. The surgical incision shows no bleeding or signs of infection. Pulmonary auscultation is significant for bilateral decreased breath sounds, especially at the right base. Laboratory tests reveal an elevated D-dimer.", "text_sents": ["A 56-year-old female on 20th day post-left mastectomy presents to the emergency department complaining of shortness of breath and malaise.", "The patient says that she has remained in bed for the last two weeks.", "The physical examination reveals tenderness on the left upper thoracic wall and right calf.", "The surgical incision shows no bleeding or signs of infection.", "Pulmonary auscultation is significant for bilateral decreased breath sounds, especially at the right base.", "Laboratory tests reveal an elevated D-dimer."], "filtered_sents": null, "ent_sents": [[["female", "ENTITY", 14, 20, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["day", "ENTITY", 29, 32, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["emergency department complaining", "ENTITY", 70, 102, {"val": "C0562508", "score": 0.8304954171180725}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["shortness", "ENTITY", 106, 115, {"val": "C0349588", "score": 0.8467087745666504}, ["SS - Short stature", "short stature"], false], ["breath", "ENTITY", 119, 125, {"val": "C0225386", "score": 0.9999999403953552}, ["Respiratory air, NOS", "Portion of respiratory air"], false], ["malaise", "ENTITY", 130, 137, {"val": "C0231218", "score": 1.0}, ["Malaise", "Vague bodily discomfort"], false], ["patient", "ENTITY", 143, 150, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["weeks", "ENTITY", 202, 207, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["physical examination", "ENTITY", 213, 233, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["tenderness", "ENTITY", 242, 252, {"val": "C0234233", "score": 1.0}, ["soreness", "TENDERNESS (NOS)"], false], ["left upper thoracic wall", "ENTITY", 260, 284, {"val": "C0205076", "score": 0.7887102961540222}, ["Chest wall, NOS", "Wall, Thoracic"], false], ["right calf", "ENTITY", 289, 299, {"val": "C0489801", "score": 1.0}, ["Calf of right leg", "Posterior part of right leg"], false], ["surgical incision", "ENTITY", 305, 322, {"val": "C0184898", "score": 1.0}, ["otomy", "Surgical incisions"], false], ["bleeding", "ENTITY", 332, 340, {"val": "C0019080", "score": 0.9999999403953552}, ["Blood loss", "bleeding"], true], ["signs of infection", "ENTITY", 344, 362, {"val": "C0220913", "score": 0.7270311117172241}, ["manufactured sign", "Signage"], true], ["Pulmonary auscultation", "ENTITY", 364, 386, {"val": "C4273474", "score": 0.8112839460372925}, ["Cardiac auscultation pulmonic area (body structure)", "Cardiac auscultation pulmonary area"], false], ["bilateral", "ENTITY", 406, 415, {"val": "C0238767", "score": 1.0}, ["Right and Left", "Both sides"], false], ["decreased", "ENTITY", 416, 425, {"val": "C0205216", "score": 1.0}, ["Decreased by", "decreased"], false], ["breath sounds", "ENTITY", 426, 439, {"val": "C0035234", "score": 1.0}, ["RESPIRATORY SOUNDS AND MOVEMENTS", "breathing sounds"], false], ["right base", "ENTITY", 459, 469, {"val": "C0205090", "score": 0.7287991642951965}, ["right side", "Right (qualifier value)"], false], ["Laboratory tests", "ENTITY", 471, 487, {"val": "C0022885", "score": 1.0}, ["Laboratory procedure (procedure)", "Test"], false], ["elevated", "ENTITY", 498, 506, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false], ["D-dimer", "ENTITY", 507, 514, {"val": "C0060323", "score": 1.0}, ["fibrin fragment D-dimer", "D-dimer fibrin"], false]]], "age": 56.0, "gender": "Female"} +{"id": "20146", "raw_text": "64-year-old obese female with diagnosis of diabetes mellitus and persistently elevated HbA1c. She is reluctant to see a nutritionist and is not compliant with her diabetes medication or exercise. She complains of a painful skin lesion on the left lower leg. She has tried using topical lotions and creams but the lesion has increased in size and is now oozing.", "text_sents": ["64-year-old obese female with diagnosis of diabetes mellitus and persistently elevated HbA1c.", "She is reluctant to see a nutritionist and is not compliant with her diabetes medication or exercise.", "She complains of a painful skin lesion on the left lower leg.", "She has tried using topical lotions and creams but the lesion has increased in size and is now oozing."], "filtered_sents": null, "ent_sents": [[["obese", "ENTITY", 12, 17, {"val": "C0028754", "score": 1.0}, ["Adiposity", "obese"], false], ["female", "ENTITY", 18, 24, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["diagnosis", "ENTITY", 30, 39, {"val": "C0011900", "score": 1.0}, ["diagnosis (DX)", "Diagnoses"], false], ["diabetes mellitus", "ENTITY", 43, 60, {"val": "C0011849", "score": 1.0}, ["DM", "dm"], false], ["persistently", "ENTITY", 65, 77, {"val": "C0750508", "score": 1.0}, [], false], ["elevated", "ENTITY", 78, 86, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false], ["HbA1c", "ENTITY", 87, 92, {"val": "C0019018", "score": 1.0}, ["Hemoglobin A, Glycated", "glycosylated hemoglobin a"], false], ["nutritionist", "ENTITY", 120, 132, {"val": "C0237083", "score": 1.0}, ["nutritionists", "Nutritionist"], false], ["diabetes medication", "ENTITY", 163, 182, {"val": "C0011849", "score": 0.7916601896286011}, ["DM", "dm"], true], ["exercise", "ENTITY", 186, 194, {"val": "C0015259", "score": 0.9999999403953552}, ["Physical exercise, NOS", "Exercises, Physical"], true], ["painful", "ENTITY", 215, 222, {"val": "C0030193", "score": 1.0}, ["painful", "PAIN"], false], ["skin lesion", "ENTITY", 223, 234, {"val": "C0037284", "score": 0.9999999403953552}, ["lesions skin", "disorders lesions skin"], false], ["left lower leg", "ENTITY", 242, 256, {"val": "C0230443", "score": 1.0}, ["left leg", "lower left leg"], false], ["topical lotions", "ENTITY", 278, 293, {"val": "C0991552", "score": 1.0}, ["Cutaneous lotion", "Topical Lotion Dose Form"], false], ["creams", "ENTITY", 298, 304, {"val": "C0700385", "score": 1.0}, ["creams", "Cream"], false], ["lesion", "ENTITY", 313, 319, {"val": "C0221198", "score": 0.9999998807907104}, ["GROSS LESION", "Visible Lesion"], false], ["increased", "ENTITY", 324, 333, {"val": "C0205217", "score": 1.0}, ["increased", "augment"], false], ["size", "ENTITY", 337, 341, {"val": "C0456389", "score": 1.0}, ["Size", "SIZES"], false], ["oozing", "ENTITY", 353, 359, {"val": "C0406834", "score": 0.8244050145149231}, ["Wound leak", "Wound, leaking (morphologic abnormality)"], false]]], "age": 64.0, "gender": "Female"} +{"id": "20147", "raw_text": "A 26-year-old obese woman with a history of bipolar disorder complains that her recent struggles with her weight and eating have caused her to feel depressed. She states that she has recently had difficulty sleeping and feels excessively anxious and agitated. She also states that she has had thoughts of suicide. She often finds herself fidgety and unable to sit still for extended periods of time. Her family tells her that she is increasingly irritable. Her current medications include lithium carbonate and zolpidem.", "text_sents": ["A 26-year-old obese woman with a history of bipolar disorder complains that her recent struggles with her weight and eating have caused her to feel depressed.", "She states that she has recently had difficulty sleeping and feels excessively anxious and agitated.", "She also states that she has had thoughts of suicide.", "She often finds herself fidgety and unable to sit still for extended periods of time.", "Her family tells her that she is increasingly irritable.", "Her current medications include lithium carbonate and zolpidem."], "filtered_sents": null, "ent_sents": [[["obese", "ENTITY", 14, 19, {"val": "C0028754", "score": 1.0}, ["Adiposity", "obese"], false], ["woman", "ENTITY", 20, 25, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["history", "ENTITY", 33, 40, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["bipolar disorder", "ENTITY", 44, 60, {"val": "C0005586", "score": 1.0}, ["Manic-Depressive Psychosis", "Bipolar affective disorder"], false], ["weight", "ENTITY", 106, 112, {"val": "C0005910", "score": 1.0}, ["Body Weight", "weighted"], false], ["eating", "ENTITY", 117, 123, {"val": "C0013470", "score": 1.0}, ["Eating", "Food Intake"], false], ["depressed", "ENTITY", 148, 157, {"val": "C0344315", "score": 1.0}, ["depression", "Morose mood"], false], ["states", "ENTITY", 163, 169, {"val": "C1301808", "score": 0.9999999403953552}, ["states", "State (environment)"], false], ["difficulty sleeping", "ENTITY", 196, 215, {"val": "C0037317", "score": 1.0}, ["Disturbance in sleep behavior, NOS", "Sleeping disturbances"], false], ["anxious", "ENTITY", 238, 245, {"val": "C0003467", "score": 1.0}, ["anxiety", "anxiety reaction"], false], ["agitated", "ENTITY", 250, 258, {"val": "C0085631", "score": 1.0}, ["AGITATION", "agitation"], false], ["states", "ENTITY", 269, 275, {"val": "C1301808", "score": 0.9999999403953552}, ["states", "State (environment)"], false], ["thoughts", "ENTITY", 293, 301, {"val": "C0039869", "score": 1.0}, ["Thoughts", "Thinking"], false], ["suicide", "ENTITY", 305, 312, {"val": "C0038661", "score": 1.0}, ["Suicides", "Suicide (event)"], false], ["periods", "ENTITY", 383, 390, {"val": "C0025344", "score": 0.9999999403953552}, ["menstruation", "Menorrhea"], false], ["family", "ENTITY", 404, 410, {"val": "C0015576", "score": 1.0}, ["familial", "families"], false], ["irritable", "ENTITY", 446, 455, {"val": "C0022107", "score": 1.0}, ["irritability", "Mood, Irritable"], false], ["medications", "ENTITY", 469, 480, {"val": "C0013227", "score": 1.0}, ["Pharmaceutical Products", "medicinal products"], false], ["lithium carbonate", "ENTITY", 489, 506, {"val": "C0085217", "score": 1.0}, ["Lithium carbonate", "lithium carbonate"], false], ["zolpidem", "ENTITY", 511, 519, {"val": "C0078839", "score": 1.0}, ["ZPD", "Zolpidemum"], false]]], "age": 26.0, "gender": "Female"} +{"id": "20148", "raw_text": "A 62-year-old man sees a neurologist for progressive memory loss and jerking movements of the lower extremities. Neurologic examination confirms severe cognitive deficits and memory dysfunction. An electroencephalogram shows generalized periodic sharp waves. Neuroimaging studies show moderately advanced cerebral atrophy. A cortical biopsy shows diffuse vacuolar changes of the gray matter with reactive astrocytosis but no inflammatory infiltration.", "text_sents": ["A 62-year-old man sees a neurologist for progressive memory loss and jerking movements of the lower extremities.", "Neurologic examination confirms severe cognitive deficits and memory dysfunction.", "An electroencephalogram shows generalized periodic sharp waves.", "Neuroimaging studies show moderately advanced cerebral atrophy.", "A cortical biopsy shows diffuse vacuolar changes of the gray matter with reactive astrocytosis but no inflammatory infiltration."], "filtered_sents": null, "ent_sents": [[["man", "ENTITY", 14, 17, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["neurologist", "ENTITY", 25, 36, {"val": "C0237426", "score": 1.0}, ["Neurologist (occupation)", "Neurologist"], false], ["progressive", "ENTITY", 41, 52, {"val": "C0205329", "score": 1.0}, ["progressing", "Progressive (qualifier value)"], false], ["jerking", "ENTITY", 69, 76, {"val": "C0231530", "score": 1.0}, ["Twitching", "muscle twitch"], false], ["movements", "ENTITY", 77, 86, {"val": "C0026649", "score": 0.9999999403953552}, ["body movement", "Movement (observable entity)"], false], ["lower extremities", "ENTITY", 94, 111, {"val": "C0023216", "score": 0.9999999403953552}, ["Lower limb structure (body structure)", "hind limb"], false], ["Neurologic examination", "ENTITY", 113, 135, {"val": "C0027853", "score": 1.0}, ["Neurologic Examination", "Neurological examination"], false], ["cognitive deficits", "ENTITY", 152, 170, {"val": "C0009241", "score": 1.0}, ["cognitive disorders", "cognition disorder"], false], ["memory dysfunction", "ENTITY", 175, 193, {"val": "C3887551", "score": 1.0}, ["Memory Dysfunction"], false], ["electroencephalogram", "ENTITY", 198, 218, {"val": "C0013819", "score": 1.0}, ["Electroencephalogram (EEG)", "EEG, NOS"], false], ["Neuroimaging studies", "ENTITY", 259, 279, {"val": "C0679575", "score": 0.7770856618881226}, ["neuroimaging"], false], ["cerebral atrophy", "ENTITY", 305, 321, {"val": "C0235946", "score": 0.9999999403953552}, ["Cerebral Atrophy", "cerebral atrophy"], false], ["cortical biopsy", "ENTITY", 325, 340, {"val": "C0005558", "score": 0.7582934498786926}, ["biopsied", "BX - Biopsy"], false], ["vacuolar", "ENTITY", 355, 363, {"val": "C0042219", "score": 1.0}, ["cell vacuole", "Vacuole"], false], ["changes", "ENTITY", 364, 371, {"val": "C0392747", "score": 1.0}, ["Adapted", "Changing"], false], ["gray matter", "ENTITY", 379, 390, {"val": "C0018220", "score": 1.0}, ["gray matter", "Gray Matters"], false], ["reactive astrocytosis", "ENTITY", 396, 417, {"val": "C3887640", "score": 0.7959184646606445}, ["Increase in astrocyte number", "Astrogliosis"], false], ["inflammatory infiltration", "ENTITY", 425, 450, {"val": "C0302158", "score": 0.9617139101028442}, ["Leucocytic infiltrate", "Inflammatory cell infiltration"], true]]], "age": 62.0, "gender": "Male"} +{"id": "20149", "raw_text": "A 43-year-old woman visits her dermatologist for lesions on her neck. On examination, multiple lesions are seen. Each lesion is small soft, and pedunculated. The largest lesion is about 4 mm in diameter. The color of different lesions varies from flesh colored to slightly hyperpigmented.", "text_sents": ["A 43-year-old woman visits her dermatologist for lesions on her neck.", "On examination, multiple lesions are seen.", "Each lesion is small soft, and pedunculated.", "The largest lesion is about 4 mm in diameter.", "The color of different lesions varies from flesh colored to slightly hyperpigmented."], "filtered_sents": null, "ent_sents": [[["woman visits", "ENTITY", 14, 26, {"val": "C0043210", "score": 0.7092430591583252}, ["female humans", "Girl"], false], ["dermatologist", "ENTITY", 31, 44, {"val": "C0259831", "score": 1.0}, ["Dermatologists", "dermatologists"], false], ["lesions", "ENTITY", 49, 56, {"val": "C0221198", "score": 1.0}, ["GROSS LESION", "Visible Lesion"], false], ["neck", "ENTITY", 64, 68, {"val": "C0027530", "score": 1.0}, ["Cervical", "necks"], false], ["examination", "ENTITY", 73, 84, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["multiple", "ENTITY", 86, 94, {"val": "C0439064", "score": 1.0}, ["Plural", "Numerous (qualifier value)"], false], ["lesions", "ENTITY", 95, 102, {"val": "C0221198", "score": 1.0}, ["GROSS LESION", "Visible Lesion"], false], ["lesion", "ENTITY", 118, 124, {"val": "C0221198", "score": 0.9999998807907104}, ["GROSS LESION", "Visible Lesion"], false], ["small soft", "ENTITY", 128, 138, {"val": "C0456133", "score": 0.8560004234313965}, ["small fontanelle", "Small soft spot"], false], ["pedunculated", "ENTITY", 144, 156, {"val": "C0205320", "score": 1.0}, ["pedunculated", "Pedunculated"], false], ["lesion", "ENTITY", 170, 176, {"val": "C0221198", "score": 0.9999998807907104}, ["GROSS LESION", "Visible Lesion"], false], ["diameter", "ENTITY", 194, 202, {"val": "C1301886", "score": 0.9999999403953552}, ["Calibre", "diameters"], false], ["color", "ENTITY", 208, 213, {"val": "C0009393", "score": 1.0}, ["Color (observable entity)", "colours"], false], ["lesions", "ENTITY", 227, 234, {"val": "C0221198", "score": 1.0}, ["GROSS LESION", "Visible Lesion"], false], ["hyperpigmented", "ENTITY", 273, 287, {"val": "C0333615", "score": 1.0}, ["Hyperpigmented", "hyperpigment"], false]]], "age": 43.0, "gender": "Female"} +{"id": "201410", "raw_text": "A physician is called to see a 67-year-old woman who underwent cardiac catheterization via the right femoral artery earlier in the morning. She is now complaining of a cool right foot. Upon examination she has a pulsatile mass in her right groin with loss of distal pulses, and auscultation reveals a bruit over the point at which the right femoral artery was entered.", "text_sents": ["A physician is called to see a 67-year-old woman who underwent cardiac catheterization via the right femoral artery earlier in the morning. She is now complaining of a cool right foot.", "Upon examination she has a pulsatile mass in her right groin with loss of distal pulses, and auscultation reveals a bruit over the point at which the right femoral artery was entered."], "filtered_sents": null, "ent_sents": [[["physician", "ENTITY", 2, 11, {"val": "C0031831", "score": 1.0}, ["Physicians", "physician"], false], ["woman", "ENTITY", 43, 48, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["cardiac catheterization", "ENTITY", 63, 86, {"val": "C0018795", "score": 0.9999998807907104}, ["heart catheterization procedure", "cardiac catheterisation"], false], ["right femoral artery", "ENTITY", 95, 115, {"val": "C0226447", "score": 1.0}, ["Structure of right femoral artery", "Structure of right femoral artery (body structure)"], false], ["morning", "ENTITY", 131, 138, {"val": "C0332170", "score": 1.0}, ["om - omni mane", "Morning"], false], ["complaining", "ENTITY", 151, 162, {"val": "C0277786", "score": 0.7898122072219849}, ["Main Complain", "CC"], false], ["examination", "ENTITY", 190, 201, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["pulsatile mass", "ENTITY", 212, 226, {"val": "C0034106", "score": 0.7310686111450195}, ["Perfusions, Pulsatile", "Flow, Pulsatile"], false], ["right groin", "ENTITY", 234, 245, {"val": "C0018246", "score": 0.747187614440918}, ["groins", "inguinal"], false], ["loss", "ENTITY", 251, 255, {"val": "C1517945", "score": 1.0}, ["Loss"], false], ["distal", "ENTITY", 259, 265, {"val": "C0205108", "score": 0.9999999403953552}, ["distal", "Outermost"], false], ["pulses", "ENTITY", 266, 272, {"val": "C0034107", "score": 1.0}, ["Pulse taking", "take pulse"], false], ["auscultation", "ENTITY", 278, 290, {"val": "C0004339", "score": 0.9999999403953552}, ["Auscultation (procedure)", "Auscultation - examination"], false], ["bruit", "ENTITY", 301, 306, {"val": "C0006318", "score": 1.0}, ["BRUIT", "Bruit (finding)"], false], ["right femoral artery", "ENTITY", 335, 355, {"val": "C0226447", "score": 1.0}, ["Structure of right femoral artery", "Structure of right femoral artery (body structure)"], false]]], "age": 67.0, "gender": "Female"} +{"id": "201411", "raw_text": "A 40-year-old woman with no past medical history presents to the ER with excruciating pain in her right arm that had started 1 hour prior to her admission. She denies trauma. On examination she is pale and in moderate discomfort, as well as tachypneic and tachycardic. Her body temperature is normal and her blood pressure is 80/60. Her right arm has no discoloration or movement limitation.", "text_sents": ["A 40-year-old woman with no past medical history presents to the ER with excruciating pain in her right arm that had started 1 hour prior to her admission.", "She denies trauma.", "On examination she is pale and in moderate discomfort, as well as tachypneic and tachycardic.", "Her body temperature is normal and her blood pressure is 80/60.", "Her right arm has no discoloration or movement limitation."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["medical history", "ENTITY", 33, 48, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], true], ["ER", "ENTITY", 65, 67, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], true], ["excruciating pain", "ENTITY", 73, 90, {"val": "C0278141", "score": 0.9999998807907104}, ["Excruciating pain (finding)", "Excruciating pain"], true], ["right arm", "ENTITY", 98, 107, {"val": "C0230346", "score": 1.0}, ["Right arm", "right upper arm"], true], ["hour", "ENTITY", 127, 131, {"val": "C0439227", "score": 1.0}, ["HOURS", "hour (qualifier value)"], true], ["admission", "ENTITY", 145, 154, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], true], ["trauma", "ENTITY", 167, 173, {"val": "C0043251", "score": 0.9999999403953552}, ["Wounds and Injuries", "Wounds, Injury"], true], ["examination", "ENTITY", 178, 189, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["pale", "ENTITY", 197, 201, {"val": "C0030232", "score": 1.0}, ["Loss of color", "Pale complexion"], false], ["moderate", "ENTITY", 209, 217, {"val": "C0205081", "score": 1.0}, ["Moderately", "moderate"], false], ["discomfort", "ENTITY", 218, 228, {"val": "C2364135", "score": 1.0}, ["Discomfort", "discomfort"], false], ["tachypneic", "ENTITY", 241, 251, {"val": "C0231835", "score": 1.0}, ["Tachypneas", "RAPID BREATHING"], false], ["tachycardic", "ENTITY", 256, 267, {"val": "C0039231", "score": 0.9092804193496704}, ["increased heart rate", "rapid heart beat"], false], ["body temperature", "ENTITY", 273, 289, {"val": "C0005903", "score": 1.0}, ["Body temperature finding (finding)", "Temperature (property) (qualifier value)"], false], ["normal", "ENTITY", 293, 299, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["blood pressure", "ENTITY", 308, 322, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["right arm", "ENTITY", 337, 346, {"val": "C0230346", "score": 1.0}, ["Right arm", "right upper arm"], false], ["discoloration", "ENTITY", 354, 367, {"val": "C0332572", "score": 1.0}, ["Abnormal color (finding)", "Abnormal color"], true], ["movement", "ENTITY", 371, 379, {"val": "C0026649", "score": 1.0}, ["body movement", "Movement (observable entity)"], true], ["limitation", "ENTITY", 380, 390, {"val": "C0443288", "score": 1.0}, ["restrict", "Constraint"], true]]], "age": 40.0, "gender": "Female"} +{"id": "201412", "raw_text": "A 25-year-old woman presents to the clinic complaining of prolonged fatigue. She denies difficulty sleeping and sleeps an average of 8 hours a night. She also notes hair loss, a change in her voice and weight gain during the previous 6 months. She complains of cold intolerance. On examination she has a prominent, soft, uniform anterior cervical mass at the midline.", "text_sents": ["A 25-year-old woman presents to the clinic complaining of prolonged fatigue.", "She denies difficulty sleeping and sleeps an average of 8 hours a night.", "She also notes hair loss, a change in her voice and weight gain during the previous 6 months.", "She complains of cold intolerance.", "On examination she has a prominent, soft, uniform anterior cervical mass at the midline."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["clinic", "ENTITY", 36, 42, {"val": "C0002424", "score": 0.9999999403953552}, ["Outpatient Care Facility", "clinic outpatient"], false], ["complaining", "ENTITY", 43, 54, {"val": "C0277786", "score": 0.7898122072219849}, ["Main Complain", "CC"], false], ["prolonged", "ENTITY", 58, 67, {"val": "C0439590", "score": 1.0}, ["Prolonged", "prolonged"], false], ["fatigue", "ENTITY", 68, 75, {"val": "C0015672", "score": 1.0}, ["Fatigued", "WEARINESS"], false], ["difficulty sleeping", "ENTITY", 88, 107, {"val": "C0037317", "score": 1.0}, ["Disturbance in sleep behavior, NOS", "Sleeping disturbances"], true], ["sleeps", "ENTITY", 112, 118, {"val": "C0037313", "score": 1.0}, ["Sleep", "Sleep, NOS"], true], ["average", "ENTITY", 122, 129, {"val": "C1510992", "score": 0.9999999403953552}, ["average", "Average"], true], ["night", "ENTITY", 143, 148, {"val": "C0240526", "score": 1.0}, ["Nocturnal", "nocte"], true], ["hair loss", "ENTITY", 165, 174, {"val": "C0002170", "score": 1.0}, ["Loss of hair (finding)", "falling hairs"], false], ["voice", "ENTITY", 192, 197, {"val": "C0042939", "score": 1.0}, ["Vocal sound", "Voice, NOS"], false], ["weight gain", "ENTITY", 202, 213, {"val": "C0043094", "score": 1.0}, ["weight gain", "increasing weight"], false], ["months", "ENTITY", 236, 242, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["complains", "ENTITY", 248, 257, {"val": "C0277786", "score": 0.8190441131591797}, ["Main Complain", "CC"], false], ["cold intolerance", "ENTITY", 261, 277, {"val": "C0009269", "score": 1.0}, ["COLD INTOLERANCE", "Cold sensitivity"], false], ["examination", "ENTITY", 282, 293, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["soft", "ENTITY", 315, 319, {"val": "C0205358", "score": 1.0}, ["Soft (qualifier value)", "soft"], false], ["cervical mass", "ENTITY", 338, 351, {"val": "C0742176", "score": 1.0}, ["cervical masses"], false], ["midline", "ENTITY", 359, 366, {"val": "C0549183", "score": 1.0}, ["Midline (qualifier value)", "MIDLINE"], false]]], "age": 25.0, "gender": "Female"} +{"id": "201413", "raw_text": "A 30-year-old generally healthy woman presents with shortness of breath that had started 2 hours before admission. She has had no health problems in the past besides 2 natural abortions. She had given birth to a healthy child 3 weeks before. On examination, she is apprehensive, tachypneic and tachycardic, her blood pressure is 110/70 and her oxygen saturation 92%. Otherwise, physical examination is unremarkable. Her chest x-ray and CBC are normal.", "text_sents": ["A 30-year-old generally healthy woman presents with shortness of breath that had started 2 hours before admission.", "She has had no health problems in the past besides 2 natural abortions.", "She had given birth to a healthy child 3 weeks before.", "On examination, she is apprehensive, tachypneic and tachycardic, her blood pressure is 110/70 and her oxygen saturation 92%.", "Otherwise, physical examination is unremarkable.", "Her chest x-ray and CBC are normal."], "filtered_sents": null, "ent_sents": [[["healthy", "ENTITY", 24, 31, {"val": "C3898900", "score": 1.0}, ["Healthy"], false], ["woman", "ENTITY", 32, 37, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["shortness", "ENTITY", 52, 61, {"val": "C0349588", "score": 0.8467087745666504}, ["SS - Short stature", "short stature"], false], ["breath", "ENTITY", 65, 71, {"val": "C0225386", "score": 0.9999999403953552}, ["Respiratory air, NOS", "Portion of respiratory air"], false], ["admission", "ENTITY", 104, 113, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["health problems", "ENTITY", 130, 145, {"val": "C2963170", "score": 0.7753282785415649}, ["Pregnancy and Health Problems"], true], ["natural abortions", "ENTITY", 168, 185, {"val": "C0156543", "score": 0.7793502807617188}, ["abortions", "pregnancy with abortive outcome"], true], ["birth", "ENTITY", 201, 206, {"val": "C0005615", "score": 1.0}, ["parturitions", "Parturitions"], false], ["healthy", "ENTITY", 212, 219, {"val": "C3898900", "score": 1.0}, ["Healthy"], false], ["child", "ENTITY", 220, 225, {"val": "C0008059", "score": 1.0}, ["Children (0-21)", "0-11 years old"], false], ["weeks", "ENTITY", 228, 233, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["examination", "ENTITY", 245, 256, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["tachypneic", "ENTITY", 279, 289, {"val": "C0231835", "score": 1.0}, ["Tachypneas", "RAPID BREATHING"], false], ["tachycardic", "ENTITY", 294, 305, {"val": "C0039231", "score": 0.9092804193496704}, ["increased heart rate", "rapid heart beat"], false], ["blood pressure", "ENTITY", 311, 325, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["oxygen saturation", "ENTITY", 344, 361, {"val": "C0369768", "score": 1.0}, ["Oxygen saturation", "oxygen saturation function"], false], ["physical examination", "ENTITY", 378, 398, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["unremarkable", "ENTITY", 402, 414, {"val": "C0205307", "score": 0.9999998807907104}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["chest x-ray", "ENTITY", 420, 431, {"val": "C0039985", "score": 1.0}, ["Chest Radiography", "thoracic x-ray"], false], ["CBC", "ENTITY", 436, 439, {"val": "C0009555", "score": 1.0}, ["complete blood counts", "CBC, NOS"], false], ["normal", "ENTITY", 444, 450, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], false]]], "age": 30.0, "gender": "Female"} +{"id": "201414", "raw_text": "An 85-year-old man is brought to the ER because of gradual decrease in his level of consciousness. In the last 3 days he stopped walking and eating by himself. He has had no fever, cough, rash or diarrhea. His daughter recalls that he had been involved in a car accident 3 weeks prior to his admission and had a normal head CT at that time.", "text_sents": ["An 85-year-old man is brought to the ER because of gradual decrease in his level of consciousness.", "In the last 3 days he stopped walking and eating by himself.", "He has had no fever, cough, rash or diarrhea.", "His daughter recalls that he had been involved in a car accident 3 weeks prior to his admission and had a normal head CT at that time."], "filtered_sents": null, "ent_sents": [[["man", "ENTITY", 15, 18, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["ER", "ENTITY", 37, 39, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["decrease", "ENTITY", 59, 67, {"val": "C0392756", "score": 1.0}, ["DECREASED", "Reduced"], false], ["level", "ENTITY", 75, 80, {"val": "C0441889", "score": 1.0}, ["Degree", "Levels"], false], ["consciousness", "ENTITY", 84, 97, {"val": "C0009791", "score": 1.0}, ["Consciousness related finding", "consciousness"], false], ["days", "ENTITY", 113, 117, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["stopped walking", "ENTITY", 121, 136, {"val": "C0080331", "score": 0.7498776316642761}, ["walking", "Ambulation"], false], ["eating", "ENTITY", 141, 147, {"val": "C0013470", "score": 1.0}, ["Eating", "Food Intake"], false], ["fever", "ENTITY", 174, 179, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], true], ["cough", "ENTITY", 181, 186, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], true], ["rash", "ENTITY", 188, 192, {"val": "C0015230", "score": 1.0}, ["rashes", "exanthemata"], true], ["diarrhea", "ENTITY", 196, 204, {"val": "C0011991", "score": 0.9999999403953552}, ["Diarrhea, NOS", "Diarrhea NOS"], true], ["car", "ENTITY", 258, 261, {"val": "C0004381", "score": 1.0}, ["Car", "car"], false], ["accident", "ENTITY", 262, 270, {"val": "C0000924", "score": 1.0}, ["accidents and falls", "accident"], false], ["weeks", "ENTITY", 273, 278, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["admission", "ENTITY", 292, 301, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["CT", "ENTITY", 324, 326, {"val": "C0009244", "score": 1.0}, ["Cognitive Therapies", "Therapies, Cognitive Behavior"], false]]], "age": 85.0, "gender": "Male"} +{"id": "201415", "raw_text": "A 36-year-old woman presents to the emergency department with 12 weeks of amenorrhea, vaginal spotting that has increased since yesterday, lower abdominal tenderness, nausea and vomiting. The physical exam reveals overall tender abdomen, 18-week sized uterus, and cervical dilation of 2 cm. The complete blood count and biochemical profile are normal. Point of care pregnancy test with cut-off sensitivity of 25 mIU/ml Beta-HCG is negative. The ultrasound reports enlarged uterus (12 cm x 9 cm x 7 cms) with multiple cystic areas in the interior. The differential diagnosis includes vesicular mole vs fibroid degeneration.", "text_sents": ["A 36-year-old woman presents to the emergency department with 12 weeks of amenorrhea, vaginal spotting that has increased since yesterday, lower abdominal tenderness, nausea and vomiting.", "The physical exam reveals overall tender abdomen, 18-week sized uterus, and cervical dilation of 2 cm.", "The complete blood count and biochemical profile are normal.", "Point of care pregnancy test with cut-off sensitivity of 25 mIU/ml Beta-HCG is negative.", "The ultrasound reports enlarged uterus (12 cm x 9 cm x 7 cms) with multiple cystic areas in the interior.", "The differential diagnosis includes vesicular mole vs fibroid degeneration."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["emergency department", "ENTITY", 36, 56, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["weeks", "ENTITY", 65, 70, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["amenorrhea", "ENTITY", 74, 84, {"val": "C0002453", "score": 1.0}, ["Amenorrhea", "absence of menstruation"], false], ["vaginal spotting", "ENTITY", 86, 102, {"val": "C0728993", "score": 1.0}, ["vaginal spot", "spotting vaginal"], false], ["increased", "ENTITY", 112, 121, {"val": "C0205217", "score": 1.0}, ["increased", "augment"], false], ["abdominal tenderness", "ENTITY", 145, 165, {"val": "C0232498", "score": 1.0}, ["Abdominal tenderness", "Abdominal tenderness, unspecified site"], false], ["nausea", "ENTITY", 167, 173, {"val": "C0027497", "score": 0.9999998807907104}, ["nausea symptoms", "nausea symptom"], false], ["vomiting", "ENTITY", 178, 186, {"val": "C0042963", "score": 1.0}, ["vomiting", "emesis"], false], ["physical exam", "ENTITY", 192, 205, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["tender abdomen", "ENTITY", 222, 236, {"val": "C0573980", "score": 1.0}, ["Abdominal tenderness absent (situation)", "abdomen tender"], false], ["cervical dilation", "ENTITY", 264, 281, {"val": "C0079103", "score": 1.0}, ["Cervical dilatation, function", "cervical dilation"], false], ["complete blood count", "ENTITY", 295, 315, {"val": "C0009555", "score": 0.9999999403953552}, ["complete blood counts", "CBC, NOS"], false], ["biochemical profile", "ENTITY", 320, 339, {"val": "C0205474", "score": 0.7203143239021301}, ["Biochemical", "Biochemical (qualifier value)"], false], ["Point of care pregnancy test", "ENTITY", 352, 380, {"val": "C0032976", "score": 0.7923718094825745}, ["Pregnancy Test", "Pregnancy detection examination (procedure)"], false], ["Beta-HCG", "ENTITY", 419, 427, {"val": "C0106132", "score": 1.0}, ["Chorionic Gonadotropin Beta 3 Subunit", "Chorionic Gonadotropin Beta Chain"], false], ["negative", "ENTITY", 431, 439, {"val": "C0205160", "score": 0.9999999403953552}, ["out ruled", "negative"], false], ["multiple cystic areas", "ENTITY", 508, 529, {"val": "C1518662", "score": 0.7553308606147766}, [], false], ["interior", "ENTITY", 537, 545, {"val": "C0205094", "score": 0.7894598841667175}, ["front", "FORE"], false], ["differential diagnosis", "ENTITY", 551, 573, {"val": "C0011906", "score": 1.0}, ["differential diagnoses", "rule in diagnosis"], false], ["vesicular mole", "ENTITY", 583, 597, {"val": "C0020217", "score": 1.0}, ["MOLAR PREGNANCY", "pregnancy mole"], false], ["fibroid", "ENTITY", 601, 608, {"val": "C0023267", "score": 0.9999998807907104}, ["leiomyofibroma", "LEIOMYOMA, BENIGN"], false], ["degeneration", "ENTITY", 609, 621, {"val": "C0011164", "score": 1.0}, ["DEGENERATIVE ABNORMALITIES", "Degenerative abnormality"], false]]], "age": 36.0, "gender": "Female"} +{"id": "201416", "raw_text": "A 28-year-old female with neck and shoulder pain and left hand and arm paresthesias three weeks after returning from a trip to California where she attended a stray animal recovery campaign. Her physical exam was unremarkable except for slight tremors and almost imperceptible spasticity. She was prescribed NSAIDS and a topical muscle relaxant. She was brought in to the ER three days later with spastic arm movements, sweating, increasing agitation and anxiety, malaise, difficultly swallowing and marked hydrophobia, and was immediately hospitalized.", "text_sents": ["A 28-year-old female with neck and shoulder pain and left hand and arm paresthesias three weeks after returning from a trip to California where she attended a stray animal recovery campaign.", "Her physical exam was unremarkable except for slight tremors and almost imperceptible spasticity.", "She was prescribed NSAIDS and a topical muscle relaxant.", "She was brought in to the ER three days later with spastic arm movements, sweating, increasing agitation and anxiety, malaise, difficultly swallowing and marked hydrophobia, and was immediately hospitalized."], "filtered_sents": null, "ent_sents": [[["female", "ENTITY", 14, 20, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["neck", "ENTITY", 26, 30, {"val": "C0027530", "score": 1.0}, ["Cervical", "necks"], false], ["shoulder pain", "ENTITY", 35, 48, {"val": "C0037011", "score": 1.0}, ["shoulder pains", "Shoulder pain (finding)"], false], ["left hand", "ENTITY", 53, 62, {"val": "C0230371", "score": 1.0}, ["Left Hand", "Structure of left hand (body structure)"], false], ["arm paresthesias", "ENTITY", 67, 83, {"val": "C0030554", "score": 0.8855898976325989}, ["parasthesia", "paraesthesia"], false], ["weeks", "ENTITY", 90, 95, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["trip", "ENTITY", 119, 123, {"val": "C0077275", "score": 0.9999998807907104}, ["TRIP", "Luteinizing hormone-releasing factor (pig), 6-D-tryptophan"], false], ["California", "ENTITY", 127, 137, {"val": "C0006754", "score": 1.0}, ["California", "California (geographic location)"], false], ["attended", "ENTITY", 148, 156, {"val": "C1456498", "score": 1.0}, ["Attended", "Attended (qualifier value)"], false], ["stray animal", "ENTITY", 159, 171, {"val": "C4704858", "score": 1.0}, ["Animals, Stray", "Stray Animal"], false], ["recovery", "ENTITY", 172, 180, {"val": "C0237820", "score": 0.9999998807907104}, ["Recovery", "Salvage"], false], ["campaign", "ENTITY", 181, 189, {"val": "C0679720", "score": 0.8986790180206299}, ["media campaign", "campaigns media"], false], ["physical exam", "ENTITY", 195, 208, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["tremors", "ENTITY", 244, 251, {"val": "C0040822", "score": 1.0}, ["quiver", "tremor"], false], ["spasticity", "ENTITY", 277, 287, {"val": "C0026838", "score": 1.0}, ["Muscle spasm - tone", "Spasticity (qualifier value)"], false], ["prescribed", "ENTITY", 297, 307, {"val": "C0278329", "score": 0.9999998807907104}, ["Prescribing", "Prescribed"], false], ["NSAIDS", "ENTITY", 308, 314, {"val": "C0003211", "score": 1.0}, ["Non-steroidal anti-inflammatory agent, NOS", "NSAIDS"], false], ["topical muscle", "ENTITY", 321, 335, {"val": "C0026845", "score": 0.7605991363525391}, ["Muscle tissue (body structure)", "Muscle Tissues"], false], ["relaxant", "ENTITY", 336, 344, {"val": "C0358430", "score": 0.7961312532424927}, ["Muscle relaxants", "MUSCLE RELAXANTS"], false], ["ER", "ENTITY", 372, 374, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["days", "ENTITY", 381, 385, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["spastic arm movements", "ENTITY", 397, 418, {"val": "C0026649", "score": 0.7316343188285828}, ["body movement", "Movement (observable entity)"], false], ["sweating", "ENTITY", 420, 428, {"val": "C0038990", "score": 0.9999999403953552}, ["sweating symptom", "Sweating observable (observable entity)"], false], ["increasing", "ENTITY", 430, 440, {"val": "C0442808", "score": 1.0}, ["increasing", "Increasing (qualifier value)"], false], ["agitation", "ENTITY", 441, 450, {"val": "C0085631", "score": 1.0}, ["AGITATION", "agitation"], false], ["anxiety", "ENTITY", 455, 462, {"val": "C0003467", "score": 1.0}, ["anxiety", "anxiety reaction"], false], ["malaise", "ENTITY", 464, 471, {"val": "C0231218", "score": 1.0}, ["Malaise", "Vague bodily discomfort"], false], ["swallowing", "ENTITY", 485, 495, {"val": "C0011167", "score": 1.0}, ["Swallowings", "Swallowed"], false], ["hydrophobia", "ENTITY", 507, 518, {"val": "C0034494", "score": 1.0}, ["Rabies encephalitis", "HYDROPHOBIA"], false], ["hospitalized", "ENTITY", 540, 552, {"val": "C0701159", "score": 1.0}, ["hospitalized", "HOSPITALIZED"], false]]], "age": 28.0, "gender": "Female"} +{"id": "201417", "raw_text": "A 48-year-old white male with history of common variable immunodeficiency (CVID) with acute abdominal pain, fever, dehydration, HR of 132 bpm, BP 80/40. The physical examination is remarkable for tenderness and positive Murphy sign. Abdominal ultrasound shows hepatomegaly and abundant free intraperitoneal fluid. Exploratory laparotomy reveals a ruptured liver abscess, which is then surgically drained. After surgery, the patient is taken to the ICU.", "text_sents": ["A 48-year-old white male with history of common variable immunodeficiency (CVID) with acute abdominal pain, fever, dehydration, HR of 132 bpm, BP 80/40.", "The physical examination is remarkable for tenderness and positive Murphy sign.", "Abdominal ultrasound shows hepatomegaly and abundant free intraperitoneal fluid.", "Exploratory laparotomy reveals a ruptured liver abscess, which is then surgically drained.", "After surgery, the patient is taken to the ICU."], "filtered_sents": null, "ent_sents": [[["white", "ENTITY", 14, 19, {"val": "C0007457", "score": 1.0}, ["Caucasian Race", "caucasian"], false], ["male", "ENTITY", 20, 24, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["history", "ENTITY", 30, 37, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["variable immunodeficiency", "ENTITY", 48, 73, {"val": "C0009447", "score": 0.9162998199462891}, ["Sporadic hypogammaglobulinemia", "Congenital non-sex-linked hypogammaglobulinemia"], false], ["CVID", "ENTITY", 75, 79, {"val": "C0009447", "score": 1.0}, ["Sporadic hypogammaglobulinemia", "Congenital non-sex-linked hypogammaglobulinemia"], false], ["acute abdominal pain", "ENTITY", 86, 106, {"val": "C0740577", "score": 1.0}, ["abdominal acute pain", "Acute abdominal pain (finding)"], false], ["fever", "ENTITY", 108, 113, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["dehydration", "ENTITY", 115, 126, {"val": "C0011175", "score": 1.0}, ["Pure water depletion syndrome", "Dehydration (disorder)"], false], ["HR", "ENTITY", 128, 130, {"val": "C0010343", "score": 1.0}, ["CROATIA", "croatia"], false], ["BP", "ENTITY", 143, 145, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["physical examination", "ENTITY", 157, 177, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["tenderness", "ENTITY", 196, 206, {"val": "C0234233", "score": 1.0}, ["soreness", "TENDERNESS (NOS)"], false], ["positive", "ENTITY", 211, 219, {"val": "C1446409", "score": 1.0}, ["ruling", "Positive (qualifier value)"], false], ["Murphy sign", "ENTITY", 220, 231, {"val": "C0277977", "score": 1.0}, ["murphy's signs", "Murphy sign"], false], ["Abdominal ultrasound", "ENTITY", 233, 253, {"val": "C2348813", "score": 1.0}, ["transabdominal ultrasound", "abdominal ultrasound"], true], ["hepatomegaly", "ENTITY", 260, 272, {"val": "C0019209", "score": 0.9999998807907104}, ["Large liver", "Enlargement of liver"], true], ["abundant", "ENTITY", 277, 285, {"val": "C2346714", "score": 1.0}, ["Abundant"], true], ["free", "ENTITY", 286, 290, {"val": "C0332296", "score": 1.0}, ["Free of", "free"], false], ["Exploratory laparotomy", "ENTITY", 314, 336, {"val": "C0085704", "score": 1.0}, ["Exploratory laparotomy", "exploratory laparotomy"], false], ["ruptured", "ENTITY", 347, 355, {"val": "C0443294", "score": 0.9999999403953552}, ["Ruptured", "rupturing"], false], ["liver abscess", "ENTITY", 356, 369, {"val": "C0023885", "score": 1.0}, ["Abscess, Hepatic", "Abscesses, Liver"], false], ["surgically", "ENTITY", 385, 395, {"val": "C0543467", "score": 1.0}, ["surgical procedure", "Surgical Interventions"], false], ["drained", "ENTITY", 396, 403, {"val": "C0034640", "score": 0.7567039728164673}, ["Rains", "raining"], false], ["surgery", "ENTITY", 411, 418, {"val": "C0038894", "score": 1.0}, ["Surgery"], false], ["patient", "ENTITY", 424, 431, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["ICU", "ENTITY", 448, 451, {"val": "C0021708", "score": 1.0}, ["INTENSIVE CARE UNIT", "Intensive Care Units"], false]]], "age": 48.0, "gender": "Male"} +{"id": "201418", "raw_text": "A 6-month-old male infant has a urine output of less than 0.2 mL/kg/hr shortly after undergoing major surgery. On examination, he has generalized edema. His blood pressure is 115/80 mm Hg, his pulse is 141/min, and his respirations are 18/min. His blood urea nitrogen is 33 mg/dL, and his serum creatinine is 1.3 mg/dL. Initial urinalysis shows specific gravity of 1.017. Microscopic examination of the urine sample reveals 1 WBC per high-power field (HPF), 18 RBCs per HPF, and 5 granular casts per HPF. His fractional excretion of sodium is 3.3%.", "text_sents": ["A 6-month-old male infant has a urine output of less than 0.2 mL/kg/hr shortly after undergoing major surgery.", "On examination, he has generalized edema.", "His blood pressure is 115/80 mm Hg, his pulse is 141/min, and his respirations are 18/min.", "His blood urea nitrogen is 33 mg/dL, and his serum creatinine is 1.3 mg/dL. Initial urinalysis shows specific gravity of 1.017.", "Microscopic examination of the urine sample reveals 1 WBC per high-power field (HPF), 18 RBCs per HPF, and 5 granular casts per HPF.", "His fractional excretion of sodium is 3.3%."], "filtered_sents": null, "ent_sents": [[["male", "ENTITY", 14, 18, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["urine output", "ENTITY", 32, 44, {"val": "C0232856", "score": 1.0}, ["Rate of urine output, function (observable entity)", "Urinary output"], false], ["surgery", "ENTITY", 102, 109, {"val": "C0038894", "score": 1.0}, ["Surgery"], false], ["examination", "ENTITY", 114, 125, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["generalized edema", "ENTITY", 134, 151, {"val": "C0151603", "score": 1.0}, ["anasarca", "EDEMA GENERALIZED"], false], ["blood pressure", "ENTITY", 157, 171, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["pulse", "ENTITY", 193, 198, {"val": "C0034107", "score": 0.9999998807907104}, ["Pulse taking", "take pulse"], false], ["respirations", "ENTITY", 219, 231, {"val": "C0035203", "score": 1.0}, ["functioning respiratory", "ventilation"], false], ["blood urea", "ENTITY", 248, 258, {"val": "C0005845", "score": 0.9999999403953552}, ["urea blood", "blood urea"], false], ["nitrogen", "ENTITY", 259, 267, {"val": "C0028158", "score": 1.0}, ["Nitrogen, NOS", "Product containing nitrogen (medicinal product)"], false], ["serum creatinine", "ENTITY", 289, 305, {"val": "C0201976", "score": 1.0}, ["Creatinine measurement, serum (procedure)", "creatinine serum test"], false], ["Initial", "ENTITY", 320, 327, {"val": "C0205265", "score": 1.0}, ["Initial", "Initially"], false], ["urinalysis", "ENTITY", 328, 338, {"val": "C0042014", "score": 0.9999999403953552}, ["tested urine", "testings urine"], false], ["gravity", "ENTITY", 354, 361, {"val": "C0282189", "score": 1.0}, ["Gravity", "gravities"], false], ["Microscopic examination", "ENTITY", 372, 395, {"val": "C0026018", "score": 1.0}, ["Microscopy", "MIEXAM"], false], ["urine sample", "ENTITY", 403, 415, {"val": "C1610733", "score": 1.0}, ["urine sample", "Urine sample"], false], ["WBC", "ENTITY", 426, 429, {"val": "C0023508", "score": 1.0}, ["White blood cell count - observation", "Leukocyte Number"], false], ["HPF", "ENTITY", 452, 455, {"val": "C1552990", "score": 1.0}, ["HPF", "High Powered Field"], false], ["RBCs", "ENTITY", 461, 465, {"val": "C0014792", "score": 1.0}, ["Blood Cells, Red", "Red Blood Cells"], false], ["HPF", "ENTITY", 470, 473, {"val": "C1552990", "score": 1.0}, ["HPF", "High Powered Field"], false], ["granular", "ENTITY", 481, 489, {"val": "C0205248", "score": 1.0}, ["Granular", "granular"], false], ["casts", "ENTITY", 490, 495, {"val": "C0302143", "score": 1.0}, ["Cast, NOS", "Casts (qualifier value)"], false], ["HPF", "ENTITY", 500, 503, {"val": "C1552990", "score": 1.0}, ["HPF", "High Powered Field"], false], ["fractional", "ENTITY", 509, 519, {"val": "C1264633", "score": 0.8345261216163635}, ["Fractions (qualifier value)", "Fraction of (qualifier value)"], false], ["excretion", "ENTITY", 520, 529, {"val": "C0221102", "score": 1.0}, ["Excretory function (observable entity)", "eliminations"], false], ["sodium", "ENTITY", 533, 539, {"val": "C0037473", "score": 0.9999999403953552}, ["Sodium 23", "Na"], false]]], "age": 0.5, "gender": "Male"} +{"id": "201419", "raw_text": "A 52-year-old African American man with a history of heavy smoking and drinking, describes progressive dysphagia that began several months ago. He first noticed difficulty swallowing meat. His trouble swallowing then progressed to include other solid foods, soft foods, and then liquids. He is able to locate the point where food is obstructed at the lower end of his sternum. He has lost a total of 25 pounds.", "text_sents": ["A 52-year-old African American man with a history of heavy smoking and drinking, describes progressive dysphagia that began several months ago.", "He first noticed difficulty swallowing meat.", "His trouble swallowing then progressed to include other solid foods, soft foods, and then liquids.", "He is able to locate the point where food is obstructed at the lower end of his sternum.", "He has lost a total of 25 pounds."], "filtered_sents": null, "ent_sents": [[["African American", "ENTITY", 14, 30, {"val": "C0085756", "score": 1.0}, ["African American (ethnic group)", "United States Black"], false], ["man", "ENTITY", 31, 34, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["history", "ENTITY", 42, 49, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["heavy smoking", "ENTITY", 53, 66, {"val": "C3494625", "score": 0.7861477136611938}, ["Heavy Smoker", "Heavy Tobacco Smoker"], false], ["drinking", "ENTITY", 71, 79, {"val": "C0001948", "score": 1.0}, ["ALCOHOL INGESTION", "drinking"], false], ["progressive", "ENTITY", 91, 102, {"val": "C0205329", "score": 1.0}, ["progressing", "Progressive (qualifier value)"], false], ["dysphagia", "ENTITY", 103, 112, {"val": "C0011168", "score": 1.0}, ["Deglutition disorder", "DYSPHAGIA"], false], ["months", "ENTITY", 132, 138, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["difficulty", "ENTITY", 161, 171, {"val": "C1299586", "score": 1.0}, ["difficulty", "Has difficulty doing"], false], ["swallowing meat", "ENTITY", 172, 187, {"val": "C0011167", "score": 0.8810843229293823}, ["Swallowings", "Swallowed"], false], ["solid foods", "ENTITY", 245, 256, {"val": "C0453855", "score": 1.0}, ["Solid food (substance)", "solid food"], false], ["soft foods", "ENTITY", 258, 268, {"val": "C0453854", "score": 1.0}, ["soft food", "foods soft"], false], ["liquids", "ENTITY", 279, 286, {"val": "C0302908", "score": 1.0}, ["Liquid substance", "liquids"], false], ["food", "ENTITY", 325, 329, {"val": "C0016452", "score": 1.0}, ["Food or Food Substance", "Food or Food Product"], false], ["obstructed", "ENTITY", 333, 343, {"val": "C0549186", "score": 0.9999998807907104}, ["obstructed", "Obstructed"], false], ["lost", "ENTITY", 384, 388, {"val": "C0745777", "score": 0.9999999403953552}, ["lost", "Lost"], false]]], "age": 52.0, "gender": "Male"} +{"id": "201420", "raw_text": "A 32-year-old woman is admitted to the ER following a car accident. She has sustained multiple injuries including upper and lower extremity fractures. She is fully awake and alert, and she reports that she was not wearing a seat belt. Her blood pressure is 134/74 mm Hg, and her pulse is 87/min. Physical examination reveals a tender abdomen with guarding and rebound in all four quadrants. She has no bowel sounds.", "text_sents": ["A 32-year-old woman is admitted to the ER following a car accident.", "She has sustained multiple injuries including upper and lower extremity fractures.", "She is fully awake and alert, and she reports that she was not wearing a seat belt. Her blood pressure is 134/74 mm Hg, and her pulse is 87/min.", "Physical examination reveals a tender abdomen with guarding and rebound in all four quadrants.", "She has no bowel sounds."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["admitted", "ENTITY", 23, 31, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["ER", "ENTITY", 39, 41, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["car", "ENTITY", 54, 57, {"val": "C0004381", "score": 1.0}, ["Car", "car"], false], ["accident", "ENTITY", 58, 66, {"val": "C0000924", "score": 1.0}, ["accidents and falls", "accident"], false], ["multiple", "ENTITY", 86, 94, {"val": "C0439064", "score": 1.0}, ["Plural", "Numerous (qualifier value)"], false], ["injuries", "ENTITY", 95, 103, {"val": "C1510467", "score": 1.0}, ["injuries", "trauma"], false], ["upper", "ENTITY", 114, 119, {"val": "C1282910", "score": 1.0}, ["Superior", "Superior (qualifier value)"], false], ["lower extremity fractures", "ENTITY", 124, 149, {"val": "C1542178", "score": 1.0}, ["Fracture of lower leg", "leg fracture"], false], ["awake", "ENTITY", 164, 169, {"val": "C0234422", "score": 1.0}, ["awake", "Awake"], true], ["alert", "ENTITY", 174, 179, {"val": "C0239110", "score": 0.9999999403953552}, ["alert", "CONSCIOUSNESS, CLEAR"], true], ["reports", "ENTITY", 189, 196, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], true], ["seat belt", "ENTITY", 224, 233, {"val": "C0036498", "score": 0.9999998807907104}, ["seat belts", "Belt, Seat"], true], ["blood pressure", "ENTITY", 239, 253, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], true], ["pulse", "ENTITY", 279, 284, {"val": "C0034107", "score": 0.9999998807907104}, ["Pulse taking", "take pulse"], true], ["Physical examination", "ENTITY", 296, 316, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["tender", "ENTITY", 327, 333, {"val": "C0234234", "score": 0.9999998807907104}, ["Tender (qualifier value)", "Tender"], false], ["abdomen", "ENTITY", 334, 341, {"val": "C0000726", "score": 1.0}, ["Abdomen", "abd"], false], ["guarding", "ENTITY", 347, 355, {"val": "C0023226", "score": 0.7776333689689636}, ["Guardians, Legal", "Guardian"], false], ["rebound", "ENTITY", 360, 367, {"val": "C4054118", "score": 0.71809321641922}, ["REBOUND TONOMETRY"], false], ["quadrants", "ENTITY", 380, 389, {"val": "C1631280", "score": 0.8575262427330017}, ["Quadrant"], false], ["bowel sounds", "ENTITY", 402, 414, {"val": "C0232693", "score": 1.0}, ["BS - Bowel sounds", "Gurgling bowel sounds"], true]]], "age": 32.0, "gender": "Female"} +{"id": "201421", "raw_text": "A 21-year-old female is evaluated for progressive arthralgias and malaise. On examination she is found to have alopecia, a rash mainly distributed on the bridge of her nose and her cheeks, a delicate non-palpable purpura on her calves, and swelling and tenderness of her wrists and ankles. Her lab shows normocytic anemia, thrombocytopenia, a 4/4 positive ANA and anti-dsDNA. Her urine is positive for protein and RBC casts.", "text_sents": ["A 21-year-old female is evaluated for progressive arthralgias and malaise.", "On examination she is found to have alopecia, a rash mainly distributed on the bridge of her nose and her cheeks, a delicate non-palpable purpura on her calves, and swelling and tenderness of her wrists and ankles.", "Her lab shows normocytic anemia, thrombocytopenia, a 4/4 positive ANA and anti-dsDNA.", "Her urine is positive for protein and RBC casts."], "filtered_sents": null, "ent_sents": [[["female", "ENTITY", 14, 20, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["progressive", "ENTITY", 38, 49, {"val": "C0205329", "score": 1.0}, ["progressing", "Progressive (qualifier value)"], false], ["arthralgias", "ENTITY", 50, 61, {"val": "C0003862", "score": 1.0}, ["painful joint", "Joint pain"], false], ["malaise", "ENTITY", 66, 73, {"val": "C0231218", "score": 1.0}, ["Malaise", "Vague bodily discomfort"], false], ["examination", "ENTITY", 78, 89, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["alopecia", "ENTITY", 111, 119, {"val": "C0002170", "score": 1.0}, ["Loss of hair (finding)", "falling hairs"], false], ["rash", "ENTITY", 123, 127, {"val": "C0015230", "score": 1.0}, ["rashes", "exanthemata"], false], ["distributed", "ENTITY", 135, 146, {"val": "C1704711", "score": 1.0}, ["Distribute", "distribution"], false], ["bridge of her", "ENTITY", 154, 167, {"val": "C1836542", "score": 0.7425578832626343}, ["Depressed nasal root", "Depressed bridge of nose"], false], ["nose", "ENTITY", 168, 172, {"val": "C0028429", "score": 0.9999999403953552}, ["NOSE", "Nasus"], false], ["cheeks", "ENTITY", 181, 187, {"val": "C0007966", "score": 1.0}, ["Regio buccalis", "Buccal region of face"], false], ["non-palpable purpura", "ENTITY", 200, 220, {"val": "C0151190", "score": 0.8645069003105164}, ["Palpable purpura", "palpable purpura"], false], ["calves", "ENTITY", 228, 234, {"val": "C0028912", "score": 0.7797435522079468}, ["Ointments", "Ointment"], false], ["swelling", "ENTITY", 240, 248, {"val": "C0013604", "score": 0.9999999403953552}, ["dropsy", "Edematous"], false], ["tenderness", "ENTITY", 253, 263, {"val": "C0234233", "score": 1.0}, ["soreness", "TENDERNESS (NOS)"], false], ["wrists", "ENTITY", 271, 277, {"val": "C0043262", "score": 1.0}, ["Wrist Region", "Carpal region"], false], ["ankles", "ENTITY", 282, 288, {"val": "C0003086", "score": 1.0}, ["hocking", "Hock, NOS"], false], ["lab", "ENTITY", 294, 297, {"val": "C0022877", "score": 1.0}, ["LABORATORY", "Laboratory"], false], ["normocytic anemia", "ENTITY", 304, 321, {"val": "C0085577", "score": 1.0}, ["Normocytic anaemia", "NORMOCYTIC ANEMIA"], false], ["thrombocytopenia", "ENTITY", 323, 339, {"val": "C0040034", "score": 1.0}, ["THROMBOPENIA", "Thrombopenias"], false], ["positive", "ENTITY", 347, 355, {"val": "C1446409", "score": 1.0}, ["ruling", "Positive (qualifier value)"], false], ["ANA", "ENTITY", 356, 359, {"val": "C0003243", "score": 1.0}, ["antinuclear antibody", "ana"], false], ["anti-dsDNA", "ENTITY", 364, 374, {"val": "C2746079", "score": 0.889196515083313}, ["Anti-ds DNA Antibody", "Anti-dsDNA Antibody"], false], ["urine", "ENTITY", 380, 385, {"val": "C0042036", "score": 0.9999998807907104}, ["Piss", "Urine (substance)"], false], ["positive", "ENTITY", 389, 397, {"val": "C1446409", "score": 1.0}, ["ruling", "Positive (qualifier value)"], false], ["protein", "ENTITY", 402, 409, {"val": "C0033684", "score": 1.0}, ["Protein (substance)", "Protein"], false], ["RBC", "ENTITY", 414, 417, {"val": "C0014772", "score": 1.0}, ["Red Blood Cells", "cell red blood count"], false], ["casts", "ENTITY", 418, 423, {"val": "C0302143", "score": 1.0}, ["Cast, NOS", "Casts (qualifier value)"], false]]], "age": 21.0, "gender": "Female"} +{"id": "201422", "raw_text": "A 15-year-old girl presents to the ER with abdominal pain. The pain appeared gradually and was periumbilical at first, localizing to the right lower quadrant over hours. She has had no appetite since yesterday but denies diarrhea. She has had no sexual partners and her menses are regular. On examination, she has localized rebound tenderness over the right lower quadrant. On an abdominal ultrasound, a markedly edematous appendix is seen.", "text_sents": ["A 15-year-old girl presents to the ER with abdominal pain.", "The pain appeared gradually and was periumbilical at first, localizing to the right lower quadrant over hours.", "She has had no appetite since yesterday but denies diarrhea.", "She has had no sexual partners and her menses are regular.", "On examination, she has localized rebound tenderness over the right lower quadrant.", "On an abdominal ultrasound, a markedly edematous appendix is seen."], "filtered_sents": null, "ent_sents": [[["girl", "ENTITY", 14, 18, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["ER", "ENTITY", 35, 37, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["abdominal pain", "ENTITY", 43, 57, {"val": "C0000737", "score": 0.9999998807907104}, ["ABDOMINAL PAIN NOS", "Pains, Abdominal"], false], ["pain", "ENTITY", 63, 67, {"val": "C0030193", "score": 1.0}, ["painful", "PAIN"], false], ["periumbilical", "ENTITY", 95, 108, {"val": "C0457792", "score": 1.0}, ["Periumbilical (qualifier value)", "periumbilical"], false], ["right lower quadrant", "ENTITY", 137, 157, {"val": "C0230178", "score": 1.0}, ["RLQ", "Right lower quadrant of abdomen"], false], ["hours", "ENTITY", 163, 168, {"val": "C0439227", "score": 1.0}, ["HOURS", "hour (qualifier value)"], false], ["no appetite", "ENTITY", 182, 193, {"val": "C0003123", "score": 1.0}, ["lack of appetite", "anorexic"], false], ["diarrhea", "ENTITY", 221, 229, {"val": "C0011991", "score": 0.9999999403953552}, ["Diarrhea, NOS", "Diarrhea NOS"], true], ["sexual partners", "ENTITY", 246, 261, {"val": "C0036911", "score": 1.0}, ["sexual partners", "Partner, Sexual"], true], ["menses", "ENTITY", 270, 276, {"val": "C0025344", "score": 1.0}, ["menstruation", "Menorrhea"], true], ["regular", "ENTITY", 281, 288, {"val": "C0205272", "score": 1.0}, ["Regular", "regular"], true], ["examination", "ENTITY", 293, 304, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["localized", "ENTITY", 314, 323, {"val": "C0392752", "score": 1.0}, ["Localized", "localizing"], false], ["tenderness", "ENTITY", 332, 342, {"val": "C0234233", "score": 1.0}, ["soreness", "TENDERNESS (NOS)"], false], ["right lower quadrant", "ENTITY", 352, 372, {"val": "C0230178", "score": 1.0}, ["RLQ", "Right lower quadrant of abdomen"], false], ["abdominal ultrasound", "ENTITY", 380, 400, {"val": "C2348813", "score": 1.0}, ["transabdominal ultrasound", "abdominal ultrasound"], false], ["edematous appendix", "ENTITY", 413, 431, {"val": "C0013604", "score": 0.7408299446105957}, ["dropsy", "Edematous"], false]]], "age": 15.0, "gender": "Female"} +{"id": "201423", "raw_text": "A 63-year-old man presents with cough and shortness of breath. His past medical history is notable for heavy smoking, spinal stenosis, diabetes, hypothyroidism and mild psoriasis. He also has a family history of early onset dementia. His symptoms began about a week prior to his admission, with productive cough, purulent sputum and difficulty breathing, requiring him to use his home oxygen for the past 24 hours. He denies fever. On examination he is cyanotic, tachypneic, with a barrel shaped chest and diffuse rales over his lungs. A chest x-ray is notable for hyperinflation with no consolidation.", "text_sents": ["A 63-year-old man presents with cough and shortness of breath.", "His past medical history is notable for heavy smoking, spinal stenosis, diabetes, hypothyroidism and mild psoriasis.", "He also has a family history of early onset dementia.", "His symptoms began about a week prior to his admission, with productive cough, purulent sputum and difficulty breathing, requiring him to use his home oxygen for the past 24 hours.", "He denies fever.", "On examination he is cyanotic, tachypneic, with a barrel shaped chest and diffuse rales over his lungs.", "A chest x-ray is notable for hyperinflation with no consolidation."], "filtered_sents": null, "ent_sents": [[["man", "ENTITY", 14, 17, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["cough", "ENTITY", 32, 37, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["shortness of breath", "ENTITY", 42, 61, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["medical history", "ENTITY", 72, 87, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], false], ["heavy smoking", "ENTITY", 103, 116, {"val": "C3494625", "score": 0.7861477136611938}, ["Heavy Smoker", "Heavy Tobacco Smoker"], false], ["spinal stenosis", "ENTITY", 118, 133, {"val": "C0037944", "score": 1.0}, ["SPINAL STENOSIS", "Spinal stenosis (disorder)"], false], ["diabetes", "ENTITY", 135, 143, {"val": "C0011847", "score": 1.0}, ["Diabetes"], false], ["hypothyroidism", "ENTITY", 145, 159, {"val": "C0020676", "score": 1.0}, ["Hypothyroidisms", "Hypothyroidism (disorder)"], false], ["mild psoriasis", "ENTITY", 164, 178, {"val": "C0033860", "score": 0.8030861020088196}, ["Psoriases", "psoriasis"], false], ["family history", "ENTITY", 194, 208, {"val": "C0241889", "score": 1.0}, ["of family history", "Family history"], false], ["early onset", "ENTITY", 212, 223, {"val": "C4053907", "score": 0.818427562713623}, ["Early Onset Tylosis"], false], ["dementia", "ENTITY", 224, 232, {"val": "C0011265", "score": 1.0}, ["pre senile dementia", "Dementia, Presenile"], false], ["symptoms", "ENTITY", 238, 246, {"val": "C0683368", "score": 0.9999998807907104}, ["symptoms"], false], ["week", "ENTITY", 261, 265, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["admission", "ENTITY", 279, 288, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["productive cough", "ENTITY", 295, 311, {"val": "C0239134", "score": 1.0}, ["Moist cough", "Producing sputum"], false], ["purulent sputum", "ENTITY", 313, 328, {"val": "C0241235", "score": 1.0}, ["Sputum Purulent", "SPUTUM, PURULENT"], false], ["difficulty breathing", "ENTITY", 333, 353, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["home oxygen", "ENTITY", 380, 391, {"val": "C0421203", "score": 1.0}, ["home oxygen", "Home oxygen supply (finding)"], false], ["hours", "ENTITY", 408, 413, {"val": "C0439227", "score": 1.0}, ["HOURS", "hour (qualifier value)"], false], ["fever", "ENTITY", 425, 430, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], true], ["examination", "ENTITY", 435, 446, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["cyanotic", "ENTITY", 453, 461, {"val": "C0332580", "score": 1.0}, ["cyanotic", "Cyanotic"], false], ["tachypneic", "ENTITY", 463, 473, {"val": "C0231835", "score": 1.0}, ["Tachypneas", "RAPID BREATHING"], false], ["barrel", "ENTITY", 482, 488, {"val": "C2700485", "score": 1.0}, ["Barrel Shape", "Barrel"], false], ["shaped chest", "ENTITY", 489, 501, {"val": "C0332479", "score": 0.7991132736206055}, ["SHAPES", "Shape"], false], ["diffuse rales", "ENTITY", 506, 519, {"val": "C0205219", "score": 0.8313601016998291}, ["Diffuse", "Widespread"], false], ["lungs", "ENTITY", 529, 534, {"val": "C0024109", "score": 1.0}, ["lung structure", "Pulmo"], false], ["chest x-ray", "ENTITY", 538, 549, {"val": "C0039985", "score": 1.0}, ["Chest Radiography", "thoracic x-ray"], false], ["hyperinflation", "ENTITY", 565, 579, {"val": "C0020449", "score": 1.0}, ["Hyperexpansion", "hyperdistension"], false], ["no consolidation", "ENTITY", 585, 601, {"val": "C0521530", "score": 0.933492124080658}, ["Air Space Opacification", "Pulmonary Consolidation"], false]]], "age": 63.0, "gender": "Male"} +{"id": "201424", "raw_text": "A 33-year-old male athlete presented to the ER with acute abdominal pain. Family member says the patient fell off his bike a week earlier and suffered blunt trauma to the left hemi-abdomen, and he has had mild abdominal pain since that day. The patient's history is negative for smoking, drugs, and alcohol. BP: 60/30 mmHg, HR: 140/min. The patient is pale, the physical examination of the abdomen revealed muscle contraction and resistance. Emergency ultrasound and CT scan of the abdomen reveal extended intraperitoneal hemorrhage due to spleen rupture.", "text_sents": ["A 33-year-old male athlete presented to the ER with acute abdominal pain.", "Family member says the patient fell off his bike a week earlier and suffered blunt trauma to the left hemi-abdomen, and he has had mild abdominal pain since that day.", "The patient's history is negative for smoking, drugs, and alcohol.", "BP: 60/30 mmHg, HR: 140/min.", "The patient is pale, the physical examination of the abdomen revealed muscle contraction and resistance.", "Emergency ultrasound and CT scan of the abdomen reveal extended intraperitoneal hemorrhage due to spleen rupture."], "filtered_sents": null, "ent_sents": [[["male", "ENTITY", 14, 18, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["athlete", "ENTITY", 19, 26, {"val": "C0238703", "score": 0.9999998807907104}, ["Athlete", "athlete"], false], ["ER", "ENTITY", 44, 46, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["acute abdominal pain", "ENTITY", 52, 72, {"val": "C0740577", "score": 1.0}, ["abdominal acute pain", "Acute abdominal pain (finding)"], false], ["Family member", "ENTITY", 74, 87, {"val": "C0086282", "score": 1.0}, ["family person", "family member"], false], ["patient", "ENTITY", 97, 104, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["week", "ENTITY", 125, 129, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["blunt trauma", "ENTITY", 151, 163, {"val": "C0043253", "score": 1.0}, ["Nonpenetrating Injuries", "trauma blunt"], false], ["mild", "ENTITY", 205, 209, {"val": "C1513302", "score": 1.0}, ["MILD", "Common Terminology Criteria for Adverse Events Grade 1"], false], ["abdominal pain", "ENTITY", 210, 224, {"val": "C0000737", "score": 0.9999998807907104}, ["ABDOMINAL PAIN NOS", "Pains, Abdominal"], false], ["day", "ENTITY", 236, 239, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["patient's history", "ENTITY", 245, 262, {"val": "C0030706", "score": 0.7197746634483337}, ["patient rights", "Patients' Right"], false], ["negative", "ENTITY", 266, 274, {"val": "C0205160", "score": 0.9999999403953552}, ["out ruled", "negative"], false], ["smoking", "ENTITY", 279, 286, {"val": "C0037369", "score": 1.0}, ["smoking", "smokings"], true], ["drugs", "ENTITY", 288, 293, {"val": "C0013227", "score": 1.0}, ["Pharmaceutical Products", "medicinal products"], true], ["alcohol", "ENTITY", 299, 306, {"val": "C0001962", "score": 0.9999999403953552}, ["ethanol", "etanol"], true], ["BP", "ENTITY", 308, 310, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["HR", "ENTITY", 324, 326, {"val": "C0010343", "score": 1.0}, ["CROATIA", "croatia"], false], ["patient", "ENTITY", 341, 348, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["pale", "ENTITY", 352, 356, {"val": "C0030232", "score": 1.0}, ["Loss of color", "Pale complexion"], false], ["physical examination", "ENTITY", 362, 382, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["abdomen", "ENTITY", 390, 397, {"val": "C0000726", "score": 1.0}, ["Abdomen", "abd"], false], ["muscle contraction", "ENTITY", 407, 425, {"val": "C0026820", "score": 1.0}, ["Muscle Cell Contraction", "Contractile"], false], ["resistance", "ENTITY", 430, 440, {"val": "C0237834", "score": 1.0}, ["Resistance", "resistance [psychology]"], false], ["CT scan", "ENTITY", 467, 474, {"val": "C0040405", "score": 0.9999999403953552}, ["Computerized tomography", "cat scans"], false], ["abdomen", "ENTITY", 482, 489, {"val": "C0000726", "score": 1.0}, ["Abdomen", "abd"], false], ["intraperitoneal", "ENTITY", 506, 521, {"val": "C0442120", "score": 0.9999999403953552}, ["IP", "intraperitoneal"], false], ["spleen rupture", "ENTITY", 540, 554, {"val": "C0038000", "score": 1.0}, ["splenic rupture", "Splenic Rupture"], false]]], "age": 33.0, "gender": "Male"} +{"id": "201425", "raw_text": "An 8-year-old boy fell from his bike striking his left temple on the pavement. There was no immediate loss of consciousness, and a brief examination at the scene noted his pupils were symmetrical, reactive to the light, and he was moving all four limbs. Half an hour after the fall the child became drowsy, pale, and vomited. He was transferred to the emergency department. Upon arrival the heart rate was 52/min, blood pressure of 155/98. The Glasgow Coma Scale (GCS) was 6/15, the pupils were asymmetrical and movement of the right upper and lower extremities was impaired. The neurosurgical team advised deferring the CT scan in favor of initiating immediate treatment.", "text_sents": ["An 8-year-old boy fell from his bike striking his left temple on the pavement.", "There was no immediate loss of consciousness, and a brief examination at the scene noted his pupils were symmetrical, reactive to the light, and he was moving all four limbs.", "Half an hour after the fall the child became drowsy, pale, and vomited. He was transferred to the emergency department.", "Upon arrival the heart rate was 52/min, blood pressure of 155/98.", "The Glasgow Coma Scale (GCS) was 6/15, the pupils were asymmetrical and movement of the right upper and lower extremities was impaired.", "The neurosurgical team advised deferring the CT scan in favor of initiating immediate treatment."], "filtered_sents": null, "ent_sents": [[["boy", "ENTITY", 14, 17, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["left temple", "ENTITY", 50, 61, {"val": "C0925965", "score": 1.0}, ["Temple region of left temporal part of head", "left temple"], false], ["pavement", "ENTITY", 69, 77, {"val": "C0557772", "score": 1.0}, ["Sidewalk (environment)", "Pavement"], false], ["examination", "ENTITY", 137, 148, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], true], ["scene", "ENTITY", 156, 161, {"val": "C0031516", "score": 0.7648693323135376}, ["pheromones", "Recognition odour"], true], ["pupils", "ENTITY", 172, 178, {"val": "C0034121", "score": 1.0}, ["Pupil, NOS", "eye pupils"], true], ["symmetrical", "ENTITY", 184, 195, {"val": "C0332516", "score": 1.0}, ["Symmetrical (qualifier value)", "symmetrical"], true], ["reactive", "ENTITY", 197, 205, {"val": "C0205332", "score": 0.9999999403953552}, ["reactive", "Reactive"], true], ["light", "ENTITY", 213, 218, {"val": "C0023693", "score": 0.9999999403953552}, ["Light, electromagnetic radiation", "lighted"], true], ["moving", "ENTITY", 231, 237, {"val": "C0560560", "score": 0.9999999403953552}, ["moving [body function]", "moving"], true], ["limbs", "ENTITY", 247, 252, {"val": "C0015385", "score": 1.0}, ["Limb, NOS", "limb"], true], ["hour", "ENTITY", 262, 266, {"val": "C0439227", "score": 1.0}, ["HOURS", "hour (qualifier value)"], false], ["child", "ENTITY", 286, 291, {"val": "C0008059", "score": 1.0}, ["Children (0-21)", "0-11 years old"], false], ["drowsy", "ENTITY", 299, 305, {"val": "C0013144", "score": 1.0}, ["Mental status, drowsy", "Somnolent"], false], ["pale", "ENTITY", 307, 311, {"val": "C0030232", "score": 1.0}, ["Loss of color", "Pale complexion"], false], ["emergency department", "ENTITY", 352, 372, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["arrival", "ENTITY", 379, 386, {"val": "C1555577", "score": 1.0}, ["arrival", "ActRelationshipArrival"], false], ["heart rate", "ENTITY", 391, 401, {"val": "C0018810", "score": 1.0}, ["heart rate", "Heart Rates"], false], ["blood pressure", "ENTITY", 414, 428, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["Glasgow Coma Scale", "ENTITY", 444, 462, {"val": "C0017594", "score": 0.9999999403953552}, ["GCS - Glasgow coma scale", "Scale, Glasgow Coma"], false], ["GCS", "ENTITY", 464, 467, {"val": "C1415097", "score": 1.0}, ["Glutamate-Cysteine Ligase, Catalytic Subunit Gene", "GCLC"], false], ["pupils", "ENTITY", 483, 489, {"val": "C0034121", "score": 1.0}, ["Pupil, NOS", "eye pupils"], false], ["asymmetrical", "ENTITY", 495, 507, {"val": "C0332514", "score": 1.0}, ["Asymmetrical", "asymmetric"], false], ["movement", "ENTITY", 512, 520, {"val": "C0026649", "score": 1.0}, ["body movement", "Movement (observable entity)"], false], ["right upper", "ENTITY", 528, 539, {"val": "C0227039", "score": 0.8107052445411682}, ["Tooth 6", "Right upper permanent canine tooth"], false], ["lower extremities", "ENTITY", 544, 561, {"val": "C0023216", "score": 0.9999999403953552}, ["Lower limb structure (body structure)", "hind limb"], false], ["impaired", "ENTITY", 566, 574, {"val": "C0221099", "score": 1.0}, ["impaired", "Impairment"], false], ["deferring", "ENTITY", 607, 616, {"val": "C0205543", "score": 0.7857146859169006}, ["referred", "referring"], false], ["CT scan", "ENTITY", 621, 628, {"val": "C0040405", "score": 0.9999999403953552}, ["Computerized tomography", "cat scans"], false], ["immediate", "ENTITY", 652, 661, {"val": "C0205253", "score": 1.0}, ["Immediate", "immediate"], false], ["treatment", "ENTITY", 662, 671, {"val": "C0039798", "score": 1.0}, ["therapy", "treatment"], false]]], "age": 8.0, "gender": "Male"} +{"id": "201426", "raw_text": "A group of 14 humanitarian service workers is preparing a trip to the Amazon Rainforest region in Brazil. All the members of the group have traveled on multiple occasions and have up-to-date vaccine certificates. Malaria Chemoprophylaxis is indicated but three of the women are in different stages of pregnancy.", "text_sents": ["A group of 14 humanitarian service workers is preparing a trip to the Amazon Rainforest region in Brazil.", "All the members of the group have traveled on multiple occasions and have up-to-date vaccine certificates.", "Malaria Chemoprophylaxis is indicated but three of the women are in different stages of pregnancy."], "filtered_sents": null, "ent_sents": [[["group", "ENTITY", 2, 7, {"val": "C0441833", "score": 1.0}, ["group", "groups"], false], ["trip", "ENTITY", 58, 62, {"val": "C0077275", "score": 0.9999998807907104}, ["TRIP", "Luteinizing hormone-releasing factor (pig), 6-D-tryptophan"], false], ["Brazil", "ENTITY", 98, 104, {"val": "C0006137", "score": 1.0}, ["BR", "Brazil (geographic location)"], false], ["members", "ENTITY", 114, 121, {"val": "C0680022", "score": 1.0}, ["member", "Member"], false], ["group", "ENTITY", 129, 134, {"val": "C0441833", "score": 1.0}, ["group", "groups"], false], ["multiple", "ENTITY", 152, 160, {"val": "C0439064", "score": 1.0}, ["Plural", "Numerous (qualifier value)"], false], ["occasions", "ENTITY", 161, 170, {"val": "C0521114", "score": 0.8243726491928101}, ["Occasional", "Rare"], false], ["vaccine", "ENTITY", 191, 198, {"val": "C0042210", "score": 1.0}, ["Therapeutic vaccine", "Vaccine, NOS"], false], ["certificates", "ENTITY", 199, 211, {"val": "C0586303", "score": 1.0}, ["Certificate (record artifact)", "certificates"], false], ["Malaria", "ENTITY", 213, 220, {"val": "C0024530", "score": 1.0}, ["malarial fever", "malaria"], false], ["Chemoprophylaxis", "ENTITY", 221, 237, {"val": "C0282515", "score": 1.0}, ["chemoprevention", "Chemoprophylaxis"], false], ["women", "ENTITY", 268, 273, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["stages", "ENTITY", 291, 297, {"val": "C1306673", "score": 0.9999999403953552}, ["Stages (qualifier value)", "Stages"], false], ["pregnancy", "ENTITY", 301, 310, {"val": "C0032961", "score": 1.0}, ["PREGNANCY", "Pregnancy, NOS"], false]]], "age": 1.167, "gender": "All"} +{"id": "201427", "raw_text": "A 21-year-old college student undergoes colonoscopy due to family history of multiple polyps in his older siblings. His brother underwent total proctocolectomy at age 22, and his sister underwent a total proctocolectomy at age 28, after both were found to have hundreds of colonic adenomas on colonoscopy. Both siblings are currently well without any findings of neoplasms. The patient undergoes sigmoidoscopy and is found to have dozens of small colonic polyps within rectosigmoid. Several of these are biopsied and are all benign adenomas.", "text_sents": ["A 21-year-old college student undergoes colonoscopy due to family history of multiple polyps in his older siblings.", "His brother underwent total proctocolectomy at age 22, and his sister underwent a total proctocolectomy at age 28, after both were found to have hundreds of colonic adenomas on colonoscopy.", "Both siblings are currently well without any findings of neoplasms.", "The patient undergoes sigmoidoscopy and is found to have dozens of small colonic polyps within rectosigmoid.", "Several of these are biopsied and are all benign adenomas."], "filtered_sents": null, "ent_sents": [[["college", "ENTITY", 14, 21, {"val": "C0557806", "score": 0.9999998807907104}, ["College", "college"], false], ["student", "ENTITY", 22, 29, {"val": "C0038492", "score": 1.0}, ["Student", "Student (occupation)"], false], ["colonoscopy", "ENTITY", 40, 51, {"val": "C0009378", "score": 1.0}, ["Endoscopic examination of colon", "Colonoscopies"], false], ["family history", "ENTITY", 59, 73, {"val": "C0241889", "score": 1.0}, ["of family history", "Family history"], false], ["polyps", "ENTITY", 86, 92, {"val": "C0032584", "score": 1.0}, ["Polyp (morphologic abnormality)", "polyp"], false], ["older siblings", "ENTITY", 100, 114, {"val": "C0037047", "score": 0.8464773893356323}, ["Sibling, NOS", "SIBLING"], false], ["brother", "ENTITY", 120, 127, {"val": "C0337527", "score": 1.0}, ["brothers", "Brother, NOS"], false], ["total proctocolectomy", "ENTITY", 138, 159, {"val": "C0842176", "score": 1.0}, ["Excision of entire colon and entire rectum", "Excision of entire colon and entire rectum (procedure)"], false], ["age", "ENTITY", 163, 166, {"val": "C0001779", "score": 1.0}, ["Has age", "Chronological Age"], false], ["proctocolectomy", "ENTITY", 204, 219, {"val": "C0400076", "score": 1.0}, ["Excision of colon and rectum (procedure)", "Proctocolectomies"], false], ["age", "ENTITY", 223, 226, {"val": "C0001779", "score": 1.0}, ["Has age", "Chronological Age"], false], ["colonic adenomas", "ENTITY", 273, 289, {"val": "C4551463", "score": 1.0}, ["Adenoma of Colon", "Colonic Adenoma"], false], ["colonoscopy", "ENTITY", 293, 304, {"val": "C0009378", "score": 1.0}, ["Endoscopic examination of colon", "Colonoscopies"], false], ["siblings", "ENTITY", 311, 319, {"val": "C0037047", "score": 1.0}, ["Sibling, NOS", "SIBLING"], false], ["findings", "ENTITY", 351, 359, {"val": "C2607943", "score": 1.0}, ["findings"], true], ["neoplasms", "ENTITY", 363, 372, {"val": "C0027651", "score": 1.0}, ["NEOPLASMS", "Tumour, NOS"], true], ["patient", "ENTITY", 378, 385, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["sigmoidoscopy", "ENTITY", 396, 409, {"val": "C0037075", "score": 1.0}, ["Proctosigmoidoscopies", "Sigmoidoscopies"], false], ["small colonic polyps", "ENTITY", 441, 461, {"val": "C0009376", "score": 0.8483250141143799}, ["Colonic Polyps", "colonic polyp"], false], ["rectosigmoid", "ENTITY", 469, 481, {"val": "C0521377", "score": 1.0}, ["Rectosigmoid structure (body structure)", "Rectum and sigmoid colon"], false], ["biopsied", "ENTITY", 504, 512, {"val": "C0005558", "score": 0.9999999403953552}, ["biopsied", "BX - Biopsy"], false], ["benign adenomas", "ENTITY", 525, 540, {"val": "C0001430", "score": 0.8925156593322754}, ["ADENOMA, BENIGN", "ADENOMA"], false]]], "age": 21.0, "gender": "All"} +{"id": "201428", "raw_text": "A 31-year-old woman is seen in clinic with amenorrhea. She had menarche at age 14 and has had normal periods since then. However, her last menstrual period was 7 months ago. She also complains of an occasional milky nipple discharge. She is currently taking no mediations and would like to become pregnant soon. Examination shows a whitish nipple discharge bilaterally, but the rest of the examination is normal. Urine human chorionic gonadotropin (hCG) is negative, thyroid stimulating hormone (TSH) is normal, but prolactin is elevated.", "text_sents": ["A 31-year-old woman is seen in clinic with amenorrhea.", "She had menarche at age 14 and has had normal periods since then.", "However, her last menstrual period was 7 months ago.", "She also complains of an occasional milky nipple discharge. She is currently taking no mediations and would like to become pregnant soon.", "Examination shows a whitish nipple discharge bilaterally, but the rest of the examination is normal.", "Urine human chorionic gonadotropin (hCG) is negative, thyroid stimulating hormone (TSH) is normal, but prolactin is elevated."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["clinic", "ENTITY", 31, 37, {"val": "C0002424", "score": 0.9999999403953552}, ["Outpatient Care Facility", "clinic outpatient"], false], ["amenorrhea", "ENTITY", 43, 53, {"val": "C0002453", "score": 1.0}, ["Amenorrhea", "absence of menstruation"], false], ["menarche", "ENTITY", 63, 71, {"val": "C0025274", "score": 1.0}, ["Menarche", "Menarche (finding)"], false], ["age", "ENTITY", 75, 78, {"val": "C0001779", "score": 1.0}, ["Has age", "Chronological Age"], false], ["normal periods", "ENTITY", 94, 108, {"val": "C0559892", "score": 1.0}, ["normal menstruation", "period normal"], false], ["menstrual", "ENTITY", 139, 148, {"val": "C0025344", "score": 1.0}, ["menstruation", "Menorrhea"], false], ["period", "ENTITY", 149, 155, {"val": "C0025344", "score": 1.0}, ["menstruation", "Menorrhea"], false], ["months", "ENTITY", 162, 168, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["milky nipple discharge", "ENTITY", 210, 232, {"val": "C0567523", "score": 1.0}, ["Milky nipple discharge (disorder)", "milky nipple discharge"], false], ["mediations", "ENTITY", 261, 271, {"val": "C0680727", "score": 1.0}, ["negotiations", "Negotiating"], true], ["pregnant soon", "ENTITY", 297, 310, {"val": "C0549206", "score": 0.7315377593040466}, ["pregnant patient", "gravid"], true], ["Examination", "ENTITY", 312, 323, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["nipple discharge", "ENTITY", 340, 356, {"val": "C0149741", "score": 0.9999999403953552}, ["Discharge, Nipple", "Nipple discharge"], false], ["examination", "ENTITY", 390, 401, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["normal", "ENTITY", 405, 411, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["Urine", "ENTITY", 413, 418, {"val": "C0042036", "score": 0.9999998807907104}, ["Piss", "Urine (substance)"], false], ["hCG", "ENTITY", 449, 452, {"val": "C1141639", "score": 1.0}, ["human chorionic gonadotropin (HCG)", "Product containing human chorionic gonadotropin (medicinal product)"], false], ["negative", "ENTITY", 457, 465, {"val": "C0205160", "score": 0.9999999403953552}, ["out ruled", "negative"], false], ["thyroid stimulating hormone", "ENTITY", 467, 494, {"val": "C0040160", "score": 1.0}, ["thyroid-stimulating hormone", "Thyrotropin"], false], ["TSH", "ENTITY", 496, 499, {"val": "C0040160", "score": 1.0}, ["thyroid-stimulating hormone", "Thyrotropin"], false], ["normal", "ENTITY", 504, 510, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["prolactin", "ENTITY", 516, 525, {"val": "C0033371", "score": 1.0}, ["LTH (luteotropic hormone)", "PROLACTIN"], false], ["elevated", "ENTITY", 529, 537, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false]]], "age": 31.0, "gender": "Female"} +{"id": "201429", "raw_text": "A 51-year-old woman is seen in clinic for advice on osteoporosis. She has a past medical history of significant hypertension and diet-controlled diabetes mellitus. She currently smokes 1 pack of cigarettes per day. She was documented by previous LH and FSH levels to be in menopause within the last year. She is concerned about breaking her hip as she gets older and is seeking advice on osteoporosis prevention.", "text_sents": ["A 51-year-old woman is seen in clinic for advice on osteoporosis.", "She has a past medical history of significant hypertension and diet-controlled diabetes mellitus.", "She currently smokes 1 pack of cigarettes per day.", "She was documented by previous LH and FSH levels to be in menopause within the last year.", "She is concerned about breaking her hip as she gets older and is seeking advice on osteoporosis prevention."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["clinic", "ENTITY", 31, 37, {"val": "C0002424", "score": 0.9999999403953552}, ["Outpatient Care Facility", "clinic outpatient"], false], ["advice", "ENTITY", 42, 48, {"val": "C0150600", "score": 0.9999999403953552}, ["Recommendation to (procedure)", "advice therapy"], false], ["osteoporosis", "ENTITY", 52, 64, {"val": "C0029456", "score": 1.0}, ["Osteoporosis, unspecified", "Bone rarefaction"], false], ["medical history", "ENTITY", 81, 96, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], false], ["significant", "ENTITY", 100, 111, {"val": "C0237881", "score": 1.0}, ["significant", "Statistically Significant"], false], ["hypertension", "ENTITY", 112, 124, {"val": "C0020538", "score": 1.0}, ["Hypertension, arterial", "HYPERTENSION ARTERIAL"], false], ["diet-controlled diabetes mellitus", "ENTITY", 129, 162, {"val": "C0011878", "score": 0.7426774501800537}, ["Diabetes--Diet therapy", "DD - Diabetic diet"], false], ["pack of cigarettes", "ENTITY", 187, 205, {"val": "C0677453", "score": 0.849405825138092}, ["Cigarette", "CIGARETTES (CONTAINING TOBACCO)"], false], ["day", "ENTITY", 210, 213, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["documented", "ENTITY", 223, 233, {"val": "C1301725", "score": 1.0}, ["documenting", "Documented (qualifier value)"], false], ["LH", "ENTITY", 246, 248, {"val": "C0023607", "score": 0.9999999403953552}, ["Interstitial Cell Stimulating Hormone", "Lutropin"], false], ["FSH", "ENTITY", 253, 256, {"val": "C0016424", "score": 1.0}, ["Follicle stimulating hormone, injectable", "injectable follicle stimulating hormone (FSH)"], false], ["levels", "ENTITY", 257, 263, {"val": "C0441889", "score": 1.0}, ["Degree", "Levels"], false], ["menopause", "ENTITY", 273, 282, {"val": "C0025320", "score": 1.0}, ["female climacteric", "Menopausal"], false], ["year", "ENTITY", 299, 303, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["breaking", "ENTITY", 328, 336, {"val": "C0546956", "score": 0.7775351405143738}, ["trachyonychia", "brittle nails"], false], ["hip", "ENTITY", 341, 344, {"val": "C0019552", "score": 1.0}, ["hip", "Hip, NOS"], false], ["older", "ENTITY", 357, 362, {"val": "C0001795", "score": 0.7188849449157715}, ["Oldest Old", "aged over 80"], false], ["osteoporosis", "ENTITY", 388, 400, {"val": "C0029456", "score": 1.0}, ["Osteoporosis, unspecified", "Bone rarefaction"], false], ["prevention", "ENTITY", 401, 411, {"val": "C0199176", "score": 1.0}, ["Prophylaxis - intent", "Prophylaxis, NOS"], false]]], "age": 51.0, "gender": "Female"} +{"id": "201430", "raw_text": "A 72-year-old man complains of increasing calf pain when walking uphill. The symptoms have gradually increased over the past 3 months. The patient had an uncomplicated myocardial infarction 2 years earlier and a transient ischemic attack 6 months ago. Over the past month, his blood pressure has worsened despite previous control with diltiazem, hydrochlorothiazide, and propranolol. His is currently taking isosorbide dinitrate, hydrochlorothiazide, and aspirin. On physical examination, his blood pressure is 151/91 mm Hg, and his pulse is 67/min. There is a right carotid bruit. His lower extremities are slightly cool to the touch and have diminished pulses at the dorsalis pedis.", "text_sents": ["A 72-year-old man complains of increasing calf pain when walking uphill.", "The symptoms have gradually increased over the past 3 months.", "The patient had an uncomplicated myocardial infarction 2 years earlier and a transient ischemic attack 6 months ago.", "Over the past month, his blood pressure has worsened despite previous control with diltiazem, hydrochlorothiazide, and propranolol.", "His is currently taking isosorbide dinitrate, hydrochlorothiazide, and aspirin.", "On physical examination, his blood pressure is 151/91 mm Hg, and his pulse is 67/min.", "There is a right carotid bruit.", "His lower extremities are slightly cool to the touch and have diminished pulses at the dorsalis pedis."], "filtered_sents": null, "ent_sents": [[["man", "ENTITY", 14, 17, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["calf pain", "ENTITY", 42, 51, {"val": "C0236040", "score": 1.0}, ["pain in calf", "pain calf"], false], ["walking", "ENTITY", 57, 64, {"val": "C0080331", "score": 1.0}, ["walking", "Ambulation"], false], ["symptoms", "ENTITY", 77, 85, {"val": "C0683368", "score": 0.9999998807907104}, ["symptoms"], false], ["increased", "ENTITY", 101, 110, {"val": "C0205217", "score": 1.0}, ["increased", "augment"], false], ["months", "ENTITY", 127, 133, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["patient", "ENTITY", 139, 146, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["uncomplicated", "ENTITY", 154, 167, {"val": "C0443334", "score": 1.0}, ["uncomplicated", "Uncomplicated (qualifier value)"], false], ["myocardial infarction", "ENTITY", 168, 189, {"val": "C0027051", "score": 0.9999999403953552}, ["Infarct, Myocardial", "Myocardial Infarction, (MI)"], false], ["transient ischemic attack", "ENTITY", 212, 237, {"val": "C0007787", "score": 1.0}, ["Transient ischemic attack", "ischemic attack transient"], false], ["months", "ENTITY", 240, 246, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["month", "ENTITY", 266, 271, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["blood pressure", "ENTITY", 277, 291, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["worsened", "ENTITY", 296, 304, {"val": "C1457868", "score": 1.0}, ["Worse", "worse"], false], ["control", "ENTITY", 322, 329, {"val": "C0009932", "score": 1.0}, ["Groups, Control", "Control Groups"], false], ["diltiazem", "ENTITY", 335, 344, {"val": "C0012373", "score": 0.9999999403953552}, ["DILTIAZEM", "Diltiazemum"], false], ["hydrochlorothiazide", "ENTITY", 346, 365, {"val": "C0020261", "score": 1.0}, ["hydrochlorothiazide", "Hydrochlorothiazidum"], false], ["propranolol", "ENTITY", 371, 382, {"val": "C0033497", "score": 1.0}, ["PROPRANOLOL", "Propranolol-containing product"], false], ["isosorbide", "ENTITY", 408, 418, {"val": "C0022251", "score": 1.0}, ["D-Glucitol, 1,4:3,6-dianhydro-", "Product containing isosorbide (medicinal product)"], false], ["dinitrate", "ENTITY", 419, 428, {"val": "C0028125", "score": 0.7302682399749756}, ["nitrate salts", "Nitrate salt, NOS"], false], ["hydrochlorothiazide", "ENTITY", 430, 449, {"val": "C0020261", "score": 1.0}, ["hydrochlorothiazide", "Hydrochlorothiazidum"], false], ["aspirin", "ENTITY", 455, 462, {"val": "C0004057", "score": 1.0}, ["Acide ac\u00e9tylsalicylique", "Acid, Acetylsalicylic"], false], ["physical examination", "ENTITY", 467, 487, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["blood pressure", "ENTITY", 493, 507, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["pulse", "ENTITY", 533, 538, {"val": "C0034107", "score": 0.9999998807907104}, ["Pulse taking", "take pulse"], false], ["right carotid bruit", "ENTITY", 561, 580, {"val": "C0694543", "score": 1.0}, [], false], ["lower extremities", "ENTITY", 586, 603, {"val": "C0023216", "score": 0.9999999403953552}, ["Lower limb structure (body structure)", "hind limb"], false], ["touch", "ENTITY", 629, 634, {"val": "C0152054", "score": 1.0}, ["Therapeutic Touch", "Touch (regime/therapy)"], false], ["diminished", "ENTITY", 644, 654, {"val": "C0205216", "score": 1.0}, ["Decreased by", "decreased"], false], ["pulses", "ENTITY", 655, 661, {"val": "C0034107", "score": 1.0}, ["Pulse taking", "take pulse"], false], ["dorsalis pedis", "ENTITY", 669, 683, {"val": "C0226492", "score": 0.8714538812637329}, ["DORSALIS PEDIS ARTERY", "Arteria dorsalis pedis"], false]]], "age": 72.0, "gender": "Male"} +{"id": "20151", "raw_text": "A 44 yo male is brought to the emergency room after multiple bouts of vomiting that has a \"coffee ground\" appearance. His heart rate is 135 bpm and blood pressure is 70/40 mmHg. Physical exam findings include decreased mental status and cool extremities. He receives a rapid infusion of crystalloid solution followed by packed red blood cell transfusion and is admitted to the ICU for further care.", "text_sents": ["A 44 yo male is brought to the emergency room after multiple bouts of vomiting that has a \"coffee ground\" appearance.", "His heart rate is 135 bpm and blood pressure is 70/40 mmHg.", "Physical exam findings include decreased mental status and cool extremities.", "He receives a rapid infusion of crystalloid solution followed by packed red blood cell transfusion and is admitted to the ICU for further care."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["male", "ENTITY", 8, 12, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["emergency room", "ENTITY", 31, 45, {"val": "C0562508", "score": 1.0}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["multiple", "ENTITY", 52, 60, {"val": "C0439064", "score": 1.0}, ["Plural", "Numerous (qualifier value)"], false], ["bouts", "ENTITY", 61, 66, {"val": "C0741605", "score": 0.9999999403953552}, ["bouts"], false], ["vomiting", "ENTITY", 70, 78, {"val": "C0042963", "score": 1.0}, ["vomiting", "emesis"], false], ["appearance", "ENTITY", 106, 116, {"val": "C0233426", "score": 1.0}, ["Appearance", "PERSONAL APPEARANCES"], false], ["heart rate", "ENTITY", 122, 132, {"val": "C0018810", "score": 1.0}, ["heart rate", "Heart Rates"], false], ["bpm", "ENTITY", 140, 143, {"val": "C0439385", "score": 1.0}, ["beats per minute", "beats/min"], false], ["blood pressure", "ENTITY", 148, 162, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["Physical exam", "ENTITY", 178, 191, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["findings", "ENTITY", 192, 200, {"val": "C2607943", "score": 1.0}, ["findings"], false], ["decreased", "ENTITY", 209, 218, {"val": "C0205216", "score": 1.0}, ["Decreased by", "decreased"], false], ["mental status", "ENTITY", 219, 232, {"val": "C0278060", "score": 1.0}, ["Mental state (observable entity)", "mental status"], false], ["cool extremities", "ENTITY", 237, 253, {"val": "C0015385", "score": 0.7916126251220703}, ["Limb, NOS", "limb"], false], ["infusion", "ENTITY", 275, 283, {"val": "C0574032", "score": 0.9999999403953552}, ["Infusion - action", "infusion"], false], ["crystalloid solution", "ENTITY", 287, 307, {"val": "C0056562", "score": 0.9425629377365112}, ["crystalloids", "Crystalloid Solutions"], false], ["packed red blood cell", "ENTITY", 320, 341, {"val": "C2316467", "score": 0.9054638743400574}, ["PRBCs", "Packed Cells"], false], ["transfusion", "ENTITY", 342, 353, {"val": "C0005841", "score": 1.0}, ["Transfusion of blood product", "BLOOD TRANSFUSION"], false], ["admitted", "ENTITY", 361, 369, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["ICU", "ENTITY", 377, 380, {"val": "C0021708", "score": 1.0}, ["INTENSIVE CARE UNIT", "Intensive Care Units"], false]]], "age": 44.0, "gender": "Male"} +{"id": "20152", "raw_text": "A 62 yo male presents with four days of non-productive cough and one day of fever. He is on immunosuppressive medications, including prednisone. He is admitted to the hospital, and his work-up includes bronchoscopy with bronchoalveolar lavage (BAL). BAL fluid examination reveals owl's eye inclusion bodies in the nuclei of infection cells.", "text_sents": ["A 62 yo male presents with four days of non-productive cough and one day of fever.", "He is on immunosuppressive medications, including prednisone.", "He is admitted to the hospital, and his work-up includes bronchoscopy with bronchoalveolar lavage (BAL).", "BAL fluid examination reveals owl's eye inclusion bodies in the nuclei of infection cells."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["male", "ENTITY", 8, 12, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["days", "ENTITY", 32, 36, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["non-productive cough", "ENTITY", 40, 60, {"val": "C0850149", "score": 1.0}, ["coughing dry", "Dry cough"], false], ["day", "ENTITY", 69, 72, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["fever", "ENTITY", 76, 81, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["immunosuppressive medications", "ENTITY", 92, 121, {"val": "C0021081", "score": 0.8613267540931702}, ["immunosuppressants", "Immunosuppressants"], false], ["prednisone", "ENTITY", 133, 143, {"val": "C0032952", "score": 1.0}, ["Delta(1)-Cortisone", "Pregna-1,4-diene-3,11,20-trione, 17,21-dihydroxy-"], false], ["hospital", "ENTITY", 167, 175, {"val": "C0019994", "score": 1.0}, ["Hospitals", "HOSPITAL"], false], ["work-up", "ENTITY", 185, 192, {"val": "C0750430", "score": 1.0}, ["ups work", "up work"], false], ["bronchoscopy", "ENTITY", 202, 214, {"val": "C0006290", "score": 1.0}, ["Tracheobronchial endoscopy", "bronchoscopies"], false], ["bronchoalveolar lavage", "ENTITY", 220, 242, {"val": "C1535502", "score": 1.0}, ["Bronchoalveolar lavage (procedure)", "bronchial lavage"], false], ["BAL", "ENTITY", 244, 247, {"val": "C0012383", "score": 1.0}, ["British anti lewisite", "2,3-dimercaptopropanol"], false], ["BAL", "ENTITY", 250, 253, {"val": "C0012383", "score": 1.0}, ["British anti lewisite", "2,3-dimercaptopropanol"], false], ["examination", "ENTITY", 260, 271, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["eye", "ENTITY", 286, 289, {"val": "C0015392", "score": 1.0}, ["Eyeball", "Eyeball structure"], false], ["nuclei", "ENTITY", 314, 320, {"val": "C0007610", "score": 0.8452460169792175}, ["Nucleus, Cell", "Nucleus"], false], ["infection cells", "ENTITY", 324, 339, {"val": "C0009450", "score": 0.7294859290122986}, ["Clinical Infection", "Diseases, Infectious"], false]]], "age": 62.0, "gender": "Male"} +{"id": "20153", "raw_text": "A 65 yo male with no significant history of cardiovascular disease presents to the emergency room with acute onset of shortness of breath, tachypnea, and left-sided chest pain that worsens with inspiration. Of note, he underwent a right total hip replacement two weeks prior to presentation and was unable to begin physical therapy and rehabilitation for several days following the surgery due to poor pain management. Relevant physical exam findings include a respiratory rate of 35 and right calf pain.", "text_sents": ["A 65 yo male with no significant history of cardiovascular disease presents to the emergency room with acute onset of shortness of breath, tachypnea, and left-sided chest pain that worsens with inspiration.", "Of note, he underwent a right total hip replacement two weeks prior to presentation and was unable to begin physical therapy and rehabilitation for several days following the surgery due to poor pain management.", "Relevant physical exam findings include a respiratory rate of 35 and right calf pain."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["male", "ENTITY", 8, 12, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["no significant", "ENTITY", 18, 32, {"val": "C0237881", "score": 0.9427245855331421}, ["significant", "Statistically Significant"], false], ["cardiovascular disease", "ENTITY", 44, 66, {"val": "C0007222", "score": 1.0}, ["Cardiovascular system--Diseases", "Disorder of cardiovascular system (disorder)"], true], ["emergency room", "ENTITY", 83, 97, {"val": "C0562508", "score": 1.0}, ["EMERGENCY ROOM", "emergency service hospital"], true], ["acute onset of", "ENTITY", 103, 117, {"val": "C0205178", "score": 0.9654132723808289}, ["Acuteness", "Acuteness (qualifier value)"], true], ["shortness of breath", "ENTITY", 118, 137, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], true], ["tachypnea", "ENTITY", 139, 148, {"val": "C0231835", "score": 0.9999999403953552}, ["Tachypneas", "RAPID BREATHING"], true], ["left-sided chest pain", "ENTITY", 154, 175, {"val": "C0443246", "score": 0.8161146640777588}, ["left sided", "Left"], true], ["worsens", "ENTITY", 181, 188, {"val": "C0332271", "score": 1.0}, ["Deteriorating", "worse"], true], ["inspiration", "ENTITY", 194, 205, {"val": "C0004048", "score": 1.0}, ["Inhaling", "inspiratory"], true], ["right total hip replacement", "ENTITY", 231, 258, {"val": "C0040508", "score": 0.9110440015792847}, ["Total replacement of hip (procedure)", "Total Hip Replacement"], false], ["weeks", "ENTITY", 263, 268, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["presentation", "ENTITY", 278, 290, {"val": "C0449450", "score": 1.0}, ["Presentation", "presentations"], false], ["physical therapy", "ENTITY", 316, 332, {"val": "C0699718", "score": 1.0}, ["physical therapy", "physical therapy (field)"], false], ["rehabilitation", "ENTITY", 337, 351, {"val": "C0034991", "score": 1.0}, ["Rehabilitation therapy (regime/therapy)", "therapy rehabilitation"], false], ["days", "ENTITY", 364, 368, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["surgery", "ENTITY", 383, 390, {"val": "C0038894", "score": 1.0}, ["Surgery"], false], ["pain management", "ENTITY", 403, 418, {"val": "C0002766", "score": 1.0}, ["therapy, pain", "Pain Control"], false], ["physical exam", "ENTITY", 429, 442, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["findings", "ENTITY", 443, 451, {"val": "C2607943", "score": 1.0}, ["findings"], false], ["respiratory rate", "ENTITY", 462, 478, {"val": "C0231832", "score": 1.0}, ["Respiratory Rates", "RR - Respiratory rate"], false], ["right calf pain", "ENTITY", 489, 504, {"val": "C2032437", "score": 0.9718851447105408}, ["Pain of right calf (finding)"], false]]], "age": 65.0, "gender": "Male"} +{"id": "20154", "raw_text": "An 82-year-old woman comes to the emergency department because of chest pain and shortness of breath after being awakened in the morning by stabbing substernal chest pain radiating to the left shoulder and jaw. The patient had hypertension, renal-artery stenosis with chronic renal insufficiency, hypercholesterolemia, osteoporosis and dementia. Blood pressure was 199/108 mm Hg, respiratory rate 18 bpm, oxygen saturation 98% on ambient air. The heart sounds were rapid and with no murmurs. CK-MB was 10.9 ng/ml, CK was 89 U/l, CK index was 12.2% and Troponin T was 0.40 ng/ml. An EKG showed sinus regular tachycardia of 119 bpm, with ST-segment elevations up to 3 mm in V1, V2, and V3. A chest radiograph showed low lung volumes and right basilar subsegmental atelectasis. Coronary angiography showed no stenosis or clinically significant disease. Left ventriculography revealed akinesis of the anterior wall, hypokinesis of the apical and distal inferior walls, and compensatory hyperkinesis of the basal anterior and basal inferior walls. A transthoracic echocardiogram showed severe segmental left ventricular dysfunction involving the septum, anteroseptal territory, and apex. The overall left ventricular systolic function was mildly impaired and there was mild mitral regurgitation.", "text_sents": ["An 82-year-old woman comes to the emergency department because of chest pain and shortness of breath after being awakened in the morning by stabbing substernal chest pain radiating to the left shoulder and jaw.", "The patient had hypertension, renal-artery stenosis with chronic renal insufficiency, hypercholesterolemia, osteoporosis and dementia.", "Blood pressure was 199/108 mm Hg, respiratory rate 18 bpm, oxygen saturation 98% on ambient air.", "The heart sounds were rapid and with no murmurs.", "CK-MB was 10.9 ng/ml, CK was 89 U/l, CK index was 12.2% and Troponin T was 0.40 ng/ml.", "An EKG showed sinus regular tachycardia of 119 bpm, with ST-segment elevations up to 3 mm in V1, V2, and V3.", "A chest radiograph showed low lung volumes and right basilar subsegmental atelectasis.", "Coronary angiography showed no stenosis or clinically significant disease.", "Left ventriculography revealed akinesis of the anterior wall, hypokinesis of the apical and distal inferior walls, and compensatory hyperkinesis of the basal anterior and basal inferior walls.", "A transthoracic echocardiogram showed severe segmental left ventricular dysfunction involving the septum, anteroseptal territory, and apex.", "The overall left ventricular systolic function was mildly impaired and there was mild mitral regurgitation."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 15, 20, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["emergency department", "ENTITY", 34, 54, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["chest pain", "ENTITY", 66, 76, {"val": "C0008031", "score": 1.0}, ["pain thoracic", "PAIN CHEST"], false], ["shortness of breath", "ENTITY", 81, 100, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["awakened", "ENTITY", 113, 121, {"val": "C1883476", "score": 0.719171404838562}, ["Upon Awakening", "Upon Waking"], false], ["morning", "ENTITY", 129, 136, {"val": "C0332170", "score": 1.0}, ["om - omni mane", "Morning"], false], ["stabbing", "ENTITY", 140, 148, {"val": "C1455792", "score": 1.0}, ["Stabbing", "Stabbing sensation quality"], false], ["substernal chest pain", "ENTITY", 149, 170, {"val": "C0151826", "score": 1.0}, ["RETROSTERNAL CHEST PAIN", "chest pain substernal"], false], ["left shoulder", "ENTITY", 188, 201, {"val": "C0524469", "score": 1.0}, ["Structure of left shoulder region (body structure)", "Left shoulder"], false], ["jaw", "ENTITY", 206, 209, {"val": "C0022359", "score": 1.0}, ["Jaw", "Jaw, NOS"], false], ["patient", "ENTITY", 215, 222, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["hypertension", "ENTITY", 227, 239, {"val": "C0020538", "score": 1.0}, ["Hypertension, arterial", "HYPERTENSION ARTERIAL"], false], ["renal-artery stenosis", "ENTITY", 241, 262, {"val": "C0035067", "score": 0.7921261191368103}, ["Renal Artery Stenosis", "Narrowing of kidney artery"], false], ["chronic renal insufficiency", "ENTITY", 268, 295, {"val": "C0403447", "score": 1.0}, ["chronic kidney insufficiency", "Chronic Kidney Insufficiencies"], false], ["hypercholesterolemia", "ENTITY", 297, 317, {"val": "C0020443", "score": 1.0}, ["Elevated Cholesterol", "HYPERCHOLESTEREMIA"], false], ["osteoporosis", "ENTITY", 319, 331, {"val": "C0029456", "score": 1.0}, ["Osteoporosis, unspecified", "Bone rarefaction"], false], ["dementia", "ENTITY", 336, 344, {"val": "C0011265", "score": 1.0}, ["pre senile dementia", "Dementia, Presenile"], false], ["Blood pressure", "ENTITY", 346, 360, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["respiratory rate", "ENTITY", 380, 396, {"val": "C0231832", "score": 1.0}, ["Respiratory Rates", "RR - Respiratory rate"], false], ["bpm", "ENTITY", 400, 403, {"val": "C0439385", "score": 1.0}, ["beats per minute", "beats/min"], false], ["oxygen saturation", "ENTITY", 405, 422, {"val": "C0369768", "score": 1.0}, ["Oxygen saturation", "oxygen saturation function"], false], ["ambient", "ENTITY", 430, 437, {"val": "C1879688", "score": 1.0}, [], false], ["heart sounds", "ENTITY", 447, 459, {"val": "C0018820", "score": 0.9999998807907104}, ["sound heart", "heart sound"], false], ["CK-MB", "ENTITY", 492, 497, {"val": "C0010290", "score": 1.0}, ["Creatine kinase isoenzyme, CK>2< fraction", "Kinase, MB Creatine"], false], ["CK", "ENTITY", 514, 516, {"val": "C0009956", "score": 1.0}, ["Cook Islands", "cook islands"], false], ["CK index", "ENTITY", 529, 537, {"val": "C0600653", "score": 0.7338184714317322}, ["Indexing", "Index"], false], ["Troponin T", "ENTITY", 552, 562, {"val": "C0077404", "score": 1.0}, ["tropomyosin binding protein troponin T", "Troponin T (substance)"], false], ["EKG", "ENTITY", 582, 585, {"val": "C0013798", "score": 1.0}, ["ekgs", "ecgs"], false], ["sinus", "ENTITY", 593, 598, {"val": "C0016169", "score": 1.0}, ["fistulas", "fistulous tract"], false], ["regular tachycardia", "ENTITY", 599, 618, {"val": "C0039231", "score": 0.842836856842041}, ["increased heart rate", "rapid heart beat"], false], ["elevations", "ENTITY", 647, 657, {"val": "C0702240", "score": 1.0}, ["Elevation", "elevations"], false], ["V1", "ENTITY", 672, 674, {"val": "C0038446", "score": 0.9999999403953552}, ["Area striata structure (body structure)", "Area striata structure"], false], ["V2", "ENTITY", 676, 678, {"val": "C0507237", "score": 1.0}, ["Posterior segmental vein", "Posterior bronchopulmonary segment of superior pulmonary vein"], false], ["V3", "ENTITY", 684, 686, {"val": "C0507236", "score": 1.0}, ["Anterior bronchopulmonary segment of superior pulmonary vein", "V3"], false], ["chest radiograph", "ENTITY", 690, 706, {"val": "C0039985", "score": 0.8785949945449829}, ["Chest Radiography", "thoracic x-ray"], false], ["low", "ENTITY", 714, 717, {"val": "C0205251", "score": 0.9999999403953552}, ["Low", "Low (qualifier value)"], false], ["lung", "ENTITY", 718, 722, {"val": "C0024109", "score": 1.0}, ["lung structure", "Pulmo"], false], ["Coronary angiography", "ENTITY", 775, 795, {"val": "C0085532", "score": 1.0}, ["Angiography, coronary artery", "artery coronary angiography"], false], ["stenosis", "ENTITY", 806, 814, {"val": "C0678234", "score": 1.0}, ["abnormally narrowed form", "stenosis"], true], ["clinically significant disease", "ENTITY", 818, 848, {"val": "C2985739", "score": 0.7984492182731628}, ["clinicallySignificantIndicator"], true], ["Left ventriculography", "ENTITY", 850, 871, {"val": "C0412219", "score": 1.0}, ["Fluoroscopic angiography of left ventricle", "left ventriculography"], false], ["akinesis", "ENTITY", 881, 889, {"val": "C0085623", "score": 0.8521915078163147}, ["akinesias", "Akinesia"], false], ["anterior wall", "ENTITY", 897, 910, {"val": "C0442070", "score": 1.0}, ["anterior walls", "Anterior wall (qualifier value)"], false], ["hypokinesis", "ENTITY", 912, 923, {"val": "C0086439", "score": 1.0}, ["Hypoactivity, NOS", "Decreased spontaneous movement"], false], ["apical", "ENTITY", 931, 937, {"val": "C0205111", "score": 1.0}, ["apical", "Apical"], false], ["distal", "ENTITY", 942, 948, {"val": "C0205108", "score": 0.9999999403953552}, ["distal", "Outermost"], false], ["compensatory hyperkinesis", "ENTITY", 969, 994, {"val": "C0424295", "score": 0.7138503193855286}, ["HA - Hyperactivity", "Hyperactivity"], false], ["basal anterior", "ENTITY", 1002, 1016, {"val": "C3823011", "score": 0.7775609493255615}, ["ciliary basal body of left anterior cilium", "ciliary basal body of left anterior flagellum"], false], ["transthoracic echocardiogram", "ENTITY", 1045, 1073, {"val": "C0430462", "score": 1.0}, ["Transthoracic Echocardiography", "Transthoracic echocardiography"], false], ["segmental left ventricular dysfunction", "ENTITY", 1088, 1126, {"val": "C0242698", "score": 0.867779552936554}, ["Ventricular Dysfunctions, Left", "Impaired left ventricular function (finding)"], false], ["septum", "ENTITY", 1141, 1147, {"val": "C1327729", "score": 0.9999999403953552}, ["septum", "cell septum"], false], ["anteroseptal territory", "ENTITY", 1149, 1171, {"val": "C1301808", "score": 0.701004147529602}, ["states", "State (environment)"], false], ["apex", "ENTITY", 1177, 1181, {"val": "C0140145", "score": 1.0}, ["APEX", "HAP1 DNA repair enzyme, human"], false], ["left ventricular systolic function", "ENTITY", 1195, 1229, {"val": "C0080310", "score": 0.8544948697090149}, ["Left Ventricular Function", "Function, Left Ventricular"], false], ["mildly impaired", "ENTITY", 1234, 1249, {"val": "C2945599", "score": 0.7392403483390808}, ["Mild (qualifier value)", "Minimal"], false], ["mild", "ENTITY", 1264, 1268, {"val": "C1513302", "score": 1.0}, ["MILD", "Common Terminology Criteria for Adverse Events Grade 1"], false], ["mitral regurgitation", "ENTITY", 1269, 1289, {"val": "C0026266", "score": 1.0}, ["Mitral valve insufficiency", "mitral valve incompetence"], false]]], "age": 82.0, "gender": "Female"} +{"id": "20155", "raw_text": "A 31-year-old woman with no previous medical problems comes to the emergency room with a history of 2 weeks of joint pain and fatigue. Initially she had right ankle swelling and difficulty standing up and walking, all of which resolved after a few days. For the past several days she has had pain, swelling and stiffness in her knees, hips and right elbow. She also reports intermittent fevers ranging from 38.2 to 39.4 degrees Celsius and chest pain.", "text_sents": ["A 31-year-old woman with no previous medical problems comes to the emergency room with a history of 2 weeks of joint pain and fatigue.", "Initially she had right ankle swelling and difficulty standing up and walking, all of which resolved after a few days.", "For the past several days she has had pain, swelling and stiffness in her knees, hips and right elbow.", "She also reports intermittent fevers ranging from 38.2 to 39.4 degrees Celsius and chest pain."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["medical problems", "ENTITY", 37, 53, {"val": "C0260662", "score": 0.7208786010742188}, ["Disorder of auditory system", "problem hearing"], true], ["emergency room", "ENTITY", 67, 81, {"val": "C0562508", "score": 1.0}, ["EMERGENCY ROOM", "emergency service hospital"], true], ["history", "ENTITY", 89, 96, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], true], ["weeks", "ENTITY", 102, 107, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], true], ["joint pain", "ENTITY", 111, 121, {"val": "C0003862", "score": 1.0}, ["painful joint", "Joint pain"], true], ["fatigue", "ENTITY", 126, 133, {"val": "C0015672", "score": 1.0}, ["Fatigued", "WEARINESS"], true], ["difficulty", "ENTITY", 178, 188, {"val": "C1299586", "score": 1.0}, ["difficulty", "Has difficulty doing"], false], ["standing", "ENTITY", 189, 197, {"val": "C0231472", "score": 1.0}, ["Standing Position", "Position, Standing"], false], ["walking", "ENTITY", 205, 212, {"val": "C0080331", "score": 1.0}, ["walking", "Ambulation"], false], ["resolved", "ENTITY", 227, 235, {"val": "C1514893", "score": 1.0}, ["Resolution", "Pathologic Process Resolution"], false], ["days", "ENTITY", 248, 252, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["days", "ENTITY", 275, 279, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["pain", "ENTITY", 292, 296, {"val": "C0030193", "score": 1.0}, ["painful", "PAIN"], false], ["swelling", "ENTITY", 298, 306, {"val": "C0013604", "score": 0.9999999403953552}, ["dropsy", "Edematous"], false], ["stiffness", "ENTITY", 311, 320, {"val": "C0427008", "score": 1.0}, ["Stiffness", "stiffness"], false], ["knees", "ENTITY", 328, 333, {"val": "C0022742", "score": 1.0}, ["Bone structure of knee (body structure)", "Knee"], false], ["hips", "ENTITY", 335, 339, {"val": "C0019552", "score": 1.0}, ["hip", "Hip, NOS"], false], ["right elbow", "ENTITY", 344, 355, {"val": "C0230353", "score": 1.0}, ["elbow right", "Right cubital region"], false], ["reports", "ENTITY", 366, 373, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["intermittent fevers", "ENTITY", 374, 393, {"val": "C0277799", "score": 1.0}, ["Fever, intermittent", "Hyperthermia, episodic"], false], ["degrees", "ENTITY", 420, 427, {"val": "C0449286", "score": 1.0}, ["degree", "Degree"], false], ["Celsius", "ENTITY", 428, 435, {"val": "C0439237", "score": 1.0}, ["Degree Celsius", "Cel"], false], ["chest pain", "ENTITY", 440, 450, {"val": "C0008031", "score": 1.0}, ["pain thoracic", "PAIN CHEST"], false]]], "age": 31.0, "gender": "Female"} +{"id": "20156", "raw_text": "A 46-year-old woman presents with a 9 month history of weight loss (20 lb), sweating, insomnia and diarrhea. She reports to have been eating more than normal and that her heart sometimes races for no reason. On physical examination her hands are warm and sweaty, her pulse is irregular at 110bpm and there is hyperreflexia and mild exophthalmia.", "text_sents": ["A 46-year-old woman presents with a 9 month history of weight loss (20 lb), sweating, insomnia and diarrhea.", "She reports to have been eating more than normal and that her heart sometimes races for no reason.", "On physical examination her hands are warm and sweaty, her pulse is irregular at 110bpm and there is hyperreflexia and mild exophthalmia."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["month", "ENTITY", 39, 44, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["history", "ENTITY", 45, 52, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["sweating", "ENTITY", 77, 85, {"val": "C0038990", "score": 0.9999999403953552}, ["sweating symptom", "Sweating observable (observable entity)"], false], ["insomnia", "ENTITY", 87, 95, {"val": "C0917801", "score": 0.9999999403953552}, ["Insomnia, NOS", "INSOMNIA"], false], ["diarrhea", "ENTITY", 100, 108, {"val": "C0011991", "score": 0.9999999403953552}, ["Diarrhea, NOS", "Diarrhea NOS"], false], ["reports", "ENTITY", 114, 121, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["eating", "ENTITY", 135, 141, {"val": "C0013470", "score": 1.0}, ["Eating", "Food Intake"], false], ["normal", "ENTITY", 152, 158, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["heart sometimes", "ENTITY", 172, 187, {"val": "C1998882", "score": 0.8052822947502136}, ["Sometimes (about half the time)", "Only occasionally"], false], ["races", "ENTITY", 188, 193, {"val": "C0034510", "score": 1.0}, ["Races", "racial group"], false], ["physical examination", "ENTITY", 212, 232, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["hands", "ENTITY", 237, 242, {"val": "C0018563", "score": 1.0}, ["Hand", "hand structure"], false], ["warm", "ENTITY", 247, 251, {"val": "C0687712", "score": 1.0}, ["warming", "warms"], false], ["sweaty", "ENTITY", 256, 262, {"val": "C0232427", "score": 1.0}, ["Sweaty"], false], ["pulse", "ENTITY", 268, 273, {"val": "C0034107", "score": 0.9999998807907104}, ["Pulse taking", "take pulse"], false], ["irregular", "ENTITY", 277, 286, {"val": "C0205271", "score": 1.0}, ["Irregular", "irregular"], false], ["hyperreflexia", "ENTITY", 310, 323, {"val": "C0151889", "score": 1.0}, ["HRX", "exaggerated reflexes"], false], ["mild exophthalmia", "ENTITY", 328, 345, {"val": "C0015300", "score": 0.8652749061584473}, ["Exophthalmos (disorder)", "Eyeballs bulging out"], false]]], "age": 46.0, "gender": "Female"} +{"id": "20157", "raw_text": "A 20 yo female college student with no significant past medical history presents with a chief complaint of fatigue. She reports increased sleep and appetite over the past few months as well as difficulty concentrating on her schoolwork. She no longer enjoys spending time with her friends and feels guilty for not spending more time with her family. Her physical exam and laboratory tests, including hemoglobin, hematocrit and thyroid stimulating hormone, are within normal limits.", "text_sents": ["A 20 yo female college student with no significant past medical history presents with a chief complaint of fatigue.", "She reports increased sleep and appetite over the past few months as well as difficulty concentrating on her schoolwork.", "She no longer enjoys spending time with her friends and feels guilty for not spending more time with her family.", "Her physical exam and laboratory tests, including hemoglobin, hematocrit and thyroid stimulating hormone, are within normal limits."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["female", "ENTITY", 8, 14, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["college", "ENTITY", 15, 22, {"val": "C0557806", "score": 0.9999998807907104}, ["College", "college"], false], ["student", "ENTITY", 23, 30, {"val": "C0038492", "score": 1.0}, ["Student", "Student (occupation)"], false], ["no significant", "ENTITY", 36, 50, {"val": "C0237881", "score": 0.9427245855331421}, ["significant", "Statistically Significant"], false], ["medical history", "ENTITY", 56, 71, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], true], ["chief complaint", "ENTITY", 88, 103, {"val": "C0277786", "score": 1.0}, ["Main Complain", "CC"], true], ["fatigue", "ENTITY", 107, 114, {"val": "C0015672", "score": 1.0}, ["Fatigued", "WEARINESS"], true], ["reports", "ENTITY", 120, 127, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["increased", "ENTITY", 128, 137, {"val": "C0205217", "score": 1.0}, ["increased", "augment"], false], ["sleep", "ENTITY", 138, 143, {"val": "C0037313", "score": 1.0}, ["Sleep", "Sleep, NOS"], false], ["appetite", "ENTITY", 148, 156, {"val": "C0003618", "score": 1.0}, ["desire for food", "Appetite"], false], ["months", "ENTITY", 175, 181, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["difficulty", "ENTITY", 193, 203, {"val": "C1299586", "score": 1.0}, ["difficulty", "Has difficulty doing"], false], ["concentrating", "ENTITY", 204, 217, {"val": "C2003864", "score": 1.0}, ["Concentrate", "CONCENTRATING"], false], ["schoolwork", "ENTITY", 225, 235, {"val": "C4330222", "score": 0.7618650794029236}, ["Keeping up with schoolwork", "I have trouble keeping up with my schoolwork"], false], ["friends", "ENTITY", 281, 288, {"val": "C0079382", "score": 1.0}, ["FRIEND", "Friends"], true], ["guilty", "ENTITY", 299, 305, {"val": "C0018379", "score": 1.0}, ["Feeling guilt", "guilt"], true], ["family", "ENTITY", 342, 348, {"val": "C0015576", "score": 1.0}, ["familial", "families"], true], ["physical exam", "ENTITY", 354, 367, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["laboratory tests", "ENTITY", 372, 388, {"val": "C0022885", "score": 1.0}, ["Laboratory procedure (procedure)", "Test"], false], ["hemoglobin", "ENTITY", 400, 410, {"val": "C0019046", "score": 1.0}, ["Hemoglobin, NOS", "Hemoglobins"], false], ["hematocrit", "ENTITY", 412, 422, {"val": "C0018935", "score": 1.0}, ["Volume, Packed Red-Cell", "Packed Red-Cell Volumes"], false], ["thyroid stimulating hormone", "ENTITY", 427, 454, {"val": "C0040160", "score": 1.0}, ["thyroid-stimulating hormone", "Thyrotropin"], false], ["limits", "ENTITY", 474, 480, {"val": "C0439801", "score": 1.0}, ["limit", "Limit"], false]]], "age": 20.0, "gender": "Female"} +{"id": "20158", "raw_text": "A 10 yo boy with nighttime snoring, pauses in breathing, and restlessness with nighttime awakenings. No history of headache or night terrors. The boy's teacher recently contacted his parents because she was concerned about his declining grades, lack of attention, and excessive sleepiness during class.", "text_sents": ["A 10 yo boy with nighttime snoring, pauses in breathing, and restlessness with nighttime awakenings.", "No history of headache or night terrors.", "The boy's teacher recently contacted his parents because she was concerned about his declining grades, lack of attention, and excessive sleepiness during class."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["boy", "ENTITY", 8, 11, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["pauses", "ENTITY", 36, 42, {"val": "C0489607", "score": 1.0}, ["pauses", "pause"], false], ["breathing", "ENTITY", 46, 55, {"val": "C0004048", "score": 1.0}, ["Inhaling", "inspiratory"], false], ["restlessness", "ENTITY", 61, 73, {"val": "C0085631", "score": 1.0}, ["AGITATION", "agitation"], false], ["nighttime", "ENTITY", 79, 88, {"val": "C0240526", "score": 0.7070683240890503}, ["Nocturnal", "nocte"], false], ["awakenings", "ENTITY", 89, 99, {"val": "C1883476", "score": 0.7544837594032288}, ["Upon Awakening", "Upon Waking"], false], ["No history of", "ENTITY", 101, 114, {"val": "C0332122", "score": 0.9999998807907104}, ["No significant history of", "No history of (contextual qualifier)"], false], ["headache", "ENTITY", 115, 123, {"val": "C0018681", "score": 0.9999998807907104}, ["Cranial Pains", "head pained"], true], ["night terrors", "ENTITY", 127, 140, {"val": "C0037320", "score": 0.9999999403953552}, ["Sleep terror", "sleep terror"], true], ["teacher", "ENTITY", 152, 159, {"val": "C0221457", "score": 1.0}, ["Teacher (occupation)", "EDUCATOR"], false], ["parents", "ENTITY", 183, 190, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["declining", "ENTITY", 227, 236, {"val": "C1511741", "score": 1.0}, [], false], ["grades", "ENTITY", 237, 243, {"val": "C0441800", "score": 0.9999998807907104}, ["Grading", "grades"], false], ["lack", "ENTITY", 245, 249, {"val": "C0332268", "score": 1.0}, ["lacking", "lack"], false], ["attention", "ENTITY", 253, 262, {"val": "C0004268", "score": 1.0}, ["Attention Focus", "Attention"], false], ["excessive", "ENTITY", 268, 277, {"val": "C0442802", "score": 1.0}, ["excessively", "Excessive (qualifier value)"], false], ["sleepiness", "ENTITY", 278, 288, {"val": "C0013144", "score": 1.0}, ["Mental status, drowsy", "Somnolent"], false], ["class", "ENTITY", 296, 301, {"val": "C0456387", "score": 1.0}, ["class", "Class"], false]]], "age": 10.0, "gender": "Male"} +{"id": "20159", "raw_text": "A 10 year old child is brought to the emergency room complaining of myalgia, cough, and shortness of breath. Two weeks ago the patient was seen by his pediatrician for low-grade fever, abdominal pain, and diarrhea, diagnosed with a viral illness, and prescribed OTC medications. Three weeks ago the family returned home after a stay with relatives on a farm that raises domestic pigs for consumption. Vital signs: T: 39.5 C, BP: 90/60 HR: 120/min RR: 40/min. Physical exam findings include cyanosis, slight stiffness of the neck, and marked periorbital edema. Lab results include WBC 25,000, with 25% Eosinophils, and an unremarkable urinalysis.", "text_sents": ["A 10 year old child is brought to the emergency room complaining of myalgia, cough, and shortness of breath.", " Two weeks ago the patient was seen by his pediatrician for low-grade fever, abdominal pain, and diarrhea, diagnosed with a viral illness, and prescribed OTC medications.", "Three weeks ago the family returned home after a stay with relatives on a farm that raises domestic pigs for consumption.", "Vital signs: T: 39.5 C, BP: 90/60 HR: 120/min RR: 40/min. Physical exam findings include cyanosis, slight stiffness of the neck, and marked periorbital edema.", "Lab results include WBC 25,000, with 25% Eosinophils, and an unremarkable urinalysis."], "filtered_sents": null, "ent_sents": [[["old child", "ENTITY", 10, 19, {"val": "C0008059", "score": 0.8529067635536194}, ["Children (0-21)", "0-11 years old"], false], ["cough", "ENTITY", 77, 82, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["shortness of breath", "ENTITY", 88, 107, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["weeks", "ENTITY", 114, 119, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["patient", "ENTITY", 128, 135, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["pediatrician", "ENTITY", 152, 164, {"val": "C0237433", "score": 1.0}, ["pediatricians", "Pediatrician (occupation)"], false], ["low-grade", "ENTITY", 169, 178, {"val": "C1518005", "score": 0.9270921349525452}, ["Cervical Squamous Intraepithelial Neoplasia 1", "Low Grade Cervical Squamous Intraepithelial Neoplasia"], false], ["fever", "ENTITY", 179, 184, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["abdominal pain", "ENTITY", 186, 200, {"val": "C0000737", "score": 0.9999998807907104}, ["ABDOMINAL PAIN NOS", "Pains, Abdominal"], false], ["diarrhea", "ENTITY", 206, 214, {"val": "C0011991", "score": 0.9999999403953552}, ["Diarrhea, NOS", "Diarrhea NOS"], false], ["diagnosed", "ENTITY", 216, 225, {"val": "C0011900", "score": 0.9999999403953552}, ["diagnosis (DX)", "Diagnoses"], false], ["viral illness", "ENTITY", 233, 246, {"val": "C0042769", "score": 1.0}, ["Virus Infection", "VIRAL DISEASES"], false], ["prescribed", "ENTITY", 252, 262, {"val": "C0278329", "score": 0.9999998807907104}, ["Prescribing", "Prescribed"], false], ["OTC", "ENTITY", 263, 266, {"val": "C0013231", "score": 1.0}, ["Drugs, Non Prescription", "Over-the-Counter Product"], false], ["medications", "ENTITY", 267, 278, {"val": "C0013227", "score": 1.0}, ["Pharmaceutical Products", "medicinal products"], false], ["weeks", "ENTITY", 286, 291, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["family", "ENTITY", 300, 306, {"val": "C0015576", "score": 1.0}, ["familial", "families"], false], ["stay", "ENTITY", 329, 333, {"val": "C1698490", "score": 0.7131744623184204}, ["short stay", "SS"], false], ["relatives", "ENTITY", 339, 348, {"val": "C0080103", "score": 1.0}, ["relative (related person)", "Relative (person)"], false], ["farm", "ENTITY", 354, 358, {"val": "C0557759", "score": 0.9999999403953552}, ["farming", "Farms"], false], ["domestic", "ENTITY", 371, 379, {"val": "C0003063", "score": 1.0}, ["domestic animals", "Animal, Domestic"], false], ["pigs", "ENTITY", 380, 384, {"val": "C0039005", "score": 1.0}, ["pigs", "Family Suidae (organism)"], false], ["consumption", "ENTITY", 389, 400, {"val": "C0009830", "score": 1.0}, ["consumption", "Consumption"], false], ["Vital signs", "ENTITY", 402, 413, {"val": "C0150404", "score": 1.0}, ["monitoring vital signs", "Vital signs"], false], ["T", "ENTITY", 415, 416, {"val": "C0040223", "score": 1.0}, ["Time (property) (qualifier value)", "Time Dimension"], false], ["C", "ENTITY", 423, 424, {"val": "C0007404", "score": 1.0}, ["Catechin-containing product", "Catechin (substance)"], false], ["BP", "ENTITY", 426, 428, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["HR", "ENTITY", 436, 438, {"val": "C0010343", "score": 1.0}, ["CROATIA", "croatia"], false], ["RR", "ENTITY", 448, 450, {"val": "C3890565", "score": 0.8106696605682373}, ["Technical Agreement", "Transfer of Obligations"], false], ["Physical exam", "ENTITY", 460, 473, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["findings", "ENTITY", 474, 482, {"val": "C2607943", "score": 1.0}, ["findings"], false], ["cyanosis", "ENTITY", 491, 499, {"val": "C0010520", "score": 1.0}, ["Blue discoloration of the skin", "Cyanosis of skin"], false], ["stiffness", "ENTITY", 509, 518, {"val": "C0427008", "score": 1.0}, ["Stiffness", "stiffness"], false], ["neck", "ENTITY", 526, 530, {"val": "C0027530", "score": 1.0}, ["Cervical", "necks"], false], ["periorbital edema", "ENTITY", 545, 562, {"val": "C0151205", "score": 0.9999998807907104}, ["Swelling around the eyes", "periorbital edema"], false], ["Lab results", "ENTITY", 564, 575, {"val": "C3244125", "score": 1.0}, [], false], ["WBC", "ENTITY", 584, 587, {"val": "C0023508", "score": 1.0}, ["White blood cell count - observation", "Leukocyte Number"], false], ["Eosinophils", "ENTITY", 605, 616, {"val": "C0014467", "score": 1.0}, ["Eosinophil", "Blood Eosinophil"], false], ["urinalysis", "ENTITY", 638, 648, {"val": "C0042014", "score": 0.9999999403953552}, ["tested urine", "testings urine"], false]]], "age": 10.0, "gender": "All"} +{"id": "201510", "raw_text": "A 38 year old woman complains of severe premenstrual and menstrual pelvic pain, heavy, irregular periods and occasional spotting between periods. Past medical history remarkable for two years of infertility treatment and an ectopic pregnancy at age 26.", "text_sents": ["A 38 year old woman complains of severe premenstrual and menstrual pelvic pain, heavy, irregular periods and occasional spotting between periods.", "Past medical history remarkable for two years of infertility treatment and an ectopic pregnancy at age 26."], "filtered_sents": null, "ent_sents": [[["year", "ENTITY", 5, 9, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["severe", "ENTITY", 33, 39, {"val": "C0205082", "score": 1.0}, ["gravy", "Severe (severity modifier)"], false], ["premenstrual", "ENTITY", 40, 52, {"val": "C0443282", "score": 1.0}, ["premenstrual", "Premenstrual (qualifier value)"], false], ["menstrual", "ENTITY", 57, 66, {"val": "C0025344", "score": 1.0}, ["menstruation", "Menorrhea"], false], ["pelvic pain", "ENTITY", 67, 78, {"val": "C0030794", "score": 1.0}, ["pain in pelvis", "Pain, Pelvic"], false], ["heavy", "ENTITY", 80, 85, {"val": "C0439539", "score": 0.9999999403953552}, ["heavy weights", "Heavy"], false], ["irregular", "ENTITY", 87, 96, {"val": "C0205271", "score": 1.0}, ["Irregular", "irregular"], false], ["periods", "ENTITY", 97, 104, {"val": "C0025344", "score": 0.9999999403953552}, ["menstruation", "Menorrhea"], false], ["spotting", "ENTITY", 120, 128, {"val": "C0025874", "score": 1.0}, ["dysfunctional uterine bleed", "uterine bleeding dysfunctional"], false], ["periods", "ENTITY", 137, 144, {"val": "C0025344", "score": 0.9999999403953552}, ["menstruation", "Menorrhea"], false], ["medical history", "ENTITY", 151, 166, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], false], ["years", "ENTITY", 187, 192, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["infertility", "ENTITY", 196, 207, {"val": "C0021359", "score": 1.0}, ["Cannot achieve a pregnancy", "INFERTILITY"], false], ["treatment", "ENTITY", 208, 217, {"val": "C0039798", "score": 1.0}, ["therapy", "treatment"], false], ["ectopic", "ENTITY", 225, 232, {"val": "C0574895", "score": 1.0}, ["Ectopic", "Ectopic (qualifier value)"], false], ["pregnancy", "ENTITY", 233, 242, {"val": "C0032961", "score": 1.0}, ["PREGNANCY", "Pregnancy, NOS"], false], ["age", "ENTITY", 246, 249, {"val": "C0001779", "score": 1.0}, ["Has age", "Chronological Age"], false]]], "age": 38.0, "gender": "Female"} +{"id": "201511", "raw_text": "A 56-year old Caucasian female complains of being markedly more sensitive to the cold than most people. She also gets tired easily, has decreased appetite, and has recently tried home remedies for her constipation. Physical examination reveals hyporeflexia with delayed relaxation of knee and ankle reflexes, and very dry skin. She moves and talks slowly.", "text_sents": ["A 56-year old Caucasian female complains of being markedly more sensitive to the cold than most people.", "She also gets tired easily, has decreased appetite, and has recently tried home remedies for her constipation.", "Physical examination reveals hyporeflexia with delayed relaxation of knee and ankle reflexes, and very dry skin.", "She moves and talks slowly."], "filtered_sents": null, "ent_sents": [[["Caucasian", "ENTITY", 14, 23, {"val": "C0007457", "score": 0.9999999403953552}, ["Caucasian Race", "caucasian"], false], ["female", "ENTITY", 24, 30, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["complains", "ENTITY", 31, 40, {"val": "C0277786", "score": 0.8190441131591797}, ["Main Complain", "CC"], false], ["sensitive", "ENTITY", 64, 73, {"val": "C0020517", "score": 1.0}, ["Allergies", "Hypersensitivity reaction (disorder)"], false], ["cold", "ENTITY", 81, 85, {"val": "C0009264", "score": 1.0}, ["low temperature", "cold temperature"], false], ["people", "ENTITY", 96, 102, {"val": "C0027361", "score": 1.0}, ["person", "People"], false], ["tired", "ENTITY", 118, 123, {"val": "C0015672", "score": 1.0}, ["Fatigued", "WEARINESS"], false], ["decreased", "ENTITY", 136, 145, {"val": "C0205216", "score": 1.0}, ["Decreased by", "decreased"], false], ["appetite", "ENTITY", 146, 154, {"val": "C0003618", "score": 1.0}, ["desire for food", "Appetite"], false], ["home remedies", "ENTITY", 179, 192, {"val": "C0242390", "score": 1.0}, ["Home Remedy", "home remedy"], false], ["constipation", "ENTITY", 201, 213, {"val": "C0009806", "score": 1.0}, ["Difficulty passing stool", "Constipation"], false], ["Physical examination", "ENTITY", 215, 235, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["hyporeflexia", "ENTITY", 244, 256, {"val": "C0151888", "score": 1.0}, ["Reflex, Decreased", "REFLEXES DECREASED"], false], ["delayed", "ENTITY", 262, 269, {"val": "C0205421", "score": 1.0}, ["Defer", "Deferred"], false], ["knee", "ENTITY", 284, 288, {"val": "C0022742", "score": 1.0}, ["Bone structure of knee (body structure)", "Knee"], false], ["ankle reflexes", "ENTITY", 293, 307, {"val": "C0558845", "score": 0.8693364858627319}, ["Absent ankle jerks", "Ankle reflex absent (finding)"], false], ["dry skin", "ENTITY", 318, 326, {"val": "C0151908", "score": 1.0}, ["Anhydrotic skin", "DRY"], false], ["talks", "ENTITY", 342, 347, {"val": "C0600116", "score": 1.0}, ["Speaks", "Does speak"], false]]], "age": 56.0, "gender": "Female"} +{"id": "201512", "raw_text": "A 44-year-old man was recently in an automobile accident where he sustained a skull fracture. In the emergency room, he noted clear fluid dripping from his nose. The following day he started complaining of severe headache and fever. Nuchal rigidity was found on physical examination.", "text_sents": ["A 44-year-old man was recently in an automobile accident where he sustained a skull fracture.", "In the emergency room, he noted clear fluid dripping from his nose.", "The following day he started complaining of severe headache and fever.", "Nuchal rigidity was found on physical examination."], "filtered_sents": null, "ent_sents": [[["man", "ENTITY", 14, 17, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["automobile", "ENTITY", 37, 47, {"val": "C0004381", "score": 1.0}, ["Car", "car"], false], ["accident", "ENTITY", 48, 56, {"val": "C0000924", "score": 1.0}, ["accidents and falls", "accident"], false], ["sustained", "ENTITY", 66, 75, {"val": "C0443318", "score": 0.9999998807907104}, ["sustained", "Sustained"], false], ["skull fracture", "ENTITY", 78, 92, {"val": "C0037304", "score": 1.0}, ["Fracture, Skull", "Skull--Fractures"], false], ["emergency room", "ENTITY", 101, 115, {"val": "C0562508", "score": 1.0}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["fluid", "ENTITY", 132, 137, {"val": "C0005889", "score": 1.0}, ["Fluid, Body", "Body fluid, NOS"], false], ["dripping", "ENTITY", 138, 146, {"val": "C0452837", "score": 1.0}, ["Dripping (substance)"], false], ["nose", "ENTITY", 156, 160, {"val": "C0028429", "score": 0.9999999403953552}, ["NOSE", "Nasus"], false], ["day", "ENTITY", 176, 179, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["complaining", "ENTITY", 191, 202, {"val": "C0277786", "score": 0.7898122072219849}, ["Main Complain", "CC"], false], ["severe", "ENTITY", 206, 212, {"val": "C0205082", "score": 1.0}, ["gravy", "Severe (severity modifier)"], false], ["headache", "ENTITY", 213, 221, {"val": "C0018681", "score": 0.9999998807907104}, ["Cranial Pains", "head pained"], false], ["fever", "ENTITY", 226, 231, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["Nuchal rigidity", "ENTITY", 233, 248, {"val": "C1320474", "score": 1.0}, ["NUCHAL RIGIDITY", "nuchal rigidity"], false], ["physical examination", "ENTITY", 262, 282, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false]]], "age": 44.0, "gender": "Male"} +{"id": "201513", "raw_text": "A 5-year-old boy presents to the emergency department with complaints of progressively worsening dysphagia, drooling, fever and vocal changes. He is toxic-appearing, and leans forward while sitting on his mother's lap. He is drooling and speaks with a muffled \"hot potato\" voice. The parents deny the possibility of foreign body ingestion or trauma, and they report that they are delaying some of his vaccines.", "text_sents": ["A 5-year-old boy presents to the emergency department with complaints of progressively worsening dysphagia, drooling, fever and vocal changes.", "He is toxic-appearing, and leans forward while sitting on his mother's lap. He is drooling and speaks with a muffled \"hot potato\" voice.", "The parents deny the possibility of foreign body ingestion or trauma, and they report that they are delaying some of his vaccines."], "filtered_sents": null, "ent_sents": [[["boy", "ENTITY", 13, 16, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["emergency department", "ENTITY", 33, 53, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["complaints", "ENTITY", 59, 69, {"val": "C0277786", "score": 1.0}, ["Main Complain", "CC"], false], ["dysphagia", "ENTITY", 97, 106, {"val": "C0011168", "score": 1.0}, ["Deglutition disorder", "DYSPHAGIA"], false], ["drooling", "ENTITY", 108, 116, {"val": "C0013132", "score": 1.0}, ["dribble", "Watery mouth"], false], ["fever", "ENTITY", 118, 123, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["vocal changes", "ENTITY", 128, 141, {"val": "C0392747", "score": 0.7288753986358643}, ["Adapted", "Changing"], false], ["sitting", "ENTITY", 190, 197, {"val": "C0277814", "score": 1.0}, ["Position, Sitting", "SITTING"], false], ["mother's", "ENTITY", 205, 213, {"val": "C0026140", "score": 0.7936710715293884}, ["Milk, Human", "human milk"], false], ["lap", "ENTITY", 214, 217, {"val": "C0202118", "score": 1.0}, ["Leucine aminopeptidase measurement (procedure)", "Leucine aminopeptidase measurement"], false], ["drooling", "ENTITY", 225, 233, {"val": "C0013132", "score": 1.0}, ["dribble", "Watery mouth"], false], ["parents", "ENTITY", 284, 291, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["foreign body ingestion", "ENTITY", 316, 338, {"val": "C0520753", "score": 1.0}, ["Swallowed foreign body", "swallowed foreign body"], false], ["trauma", "ENTITY", 342, 348, {"val": "C0043251", "score": 0.9999999403953552}, ["Wounds and Injuries", "Wounds, Injury"], false], ["report", "ENTITY", 359, 365, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["delaying", "ENTITY", 380, 388, {"val": "C0032214", "score": 0.7744836211204529}, ["Play", "Plays"], false], ["vaccines", "ENTITY", 401, 409, {"val": "C0042210", "score": 1.0}, ["Therapeutic vaccine", "Vaccine, NOS"], false]]], "age": 5.0, "gender": "Male"} +{"id": "201514", "raw_text": "A 27-year-old woman at 11 weeks gestation in her second pregnancy is found to have a hemoglobin (Hb) of 9.0 g/dL, white blood cell count 6.3 x 109/L, platelet count 119 x 109/L, mean corpuscular volume 109 fL. Further investigations reveal mild iron deficiency. She already receives iron supplementation. The obstetrician repeats the complete blood cell count 2 weeks later. The Hb is 8.9 g/dL, WBC count 7.1 x 109/L, and platelets 108 x 109/L. She describes difficulty swallowing. A reticulocyte count is performed and found elevated at 180 x 109/L. The obstetrician requests a hematology consult. The following additional results were found: Negative DAT, normal clotting screen, elevated LDH (2000 IU/L), normal urea and electrolytes, normal alanine aminotransferase (ALT), anisocytosis, poikilocytosis, no fragments, no agglutination, polychromasia and presence of hemosiderin in the urine.", "text_sents": ["A 27-year-old woman at 11 weeks gestation in her second pregnancy is found to have a hemoglobin (Hb) of 9.0 g/dL, white blood cell count 6.3 x 109/L, platelet count 119 x 109/L, mean corpuscular volume 109 fL. Further investigations reveal mild iron deficiency.", "She already receives iron supplementation.", "The obstetrician repeats the complete blood cell count 2 weeks later.", "The Hb is 8.9 g/dL, WBC count 7.1 x 109/L, and platelets 108 x 109/L. She describes difficulty swallowing.", "A reticulocyte count is performed and found elevated at 180 x 109/L. The obstetrician requests a hematology consult.", "The following additional results were found: Negative DAT, normal clotting screen, elevated LDH (2000 IU/L), normal urea and electrolytes, normal alanine aminotransferase (ALT), anisocytosis, poikilocytosis, no fragments, no agglutination, polychromasia and presence of hemosiderin in the urine."], "filtered_sents": null, "ent_sents": [[["woman", "ENTITY", 14, 19, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["weeks", "ENTITY", 26, 31, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["gestation", "ENTITY", 32, 41, {"val": "C0032961", "score": 0.9999999403953552}, ["PREGNANCY", "Pregnancy, NOS"], false], ["pregnancy", "ENTITY", 56, 65, {"val": "C0032961", "score": 1.0}, ["PREGNANCY", "Pregnancy, NOS"], false], ["hemoglobin", "ENTITY", 85, 95, {"val": "C0019046", "score": 1.0}, ["Hemoglobin, NOS", "Hemoglobins"], false], ["Hb", "ENTITY", 97, 99, {"val": "C0019046", "score": 1.0}, ["Hemoglobin, NOS", "Hemoglobins"], false], ["white blood cell", "ENTITY", 114, 130, {"val": "C0023516", "score": 1.0}, ["WBC (white blood cell)", "Reticuloendothelial System, Leukocytes"], false], ["platelet count", "ENTITY", 150, 164, {"val": "C0032181", "score": 0.9999999403953552}, ["platelets count", "Platelet Count, Blood"], false], ["mean corpuscular volume", "ENTITY", 178, 201, {"val": "C0524587", "score": 1.0}, ["Mean cell volume - finding", "Mean Corpuscular Volumes"], false], ["investigations", "ENTITY", 218, 232, {"val": "C1261322", "score": 1.0}, ["Clinical investigation", "Evaluation - action"], false], ["iron deficiency", "ENTITY", 245, 260, {"val": "C0240066", "score": 1.0}, ["Iron deficiency (disorder)", "Iron Deficiency"], false], ["iron supplementation", "ENTITY", 283, 303, {"val": "C0242297", "score": 0.8632349371910095}, ["nutritional supplementation", "dietary supplementation"], false], ["obstetrician", "ENTITY", 309, 321, {"val": "C0334897", "score": 0.9999999403953552}, ["Obstetricians", "obstetrician"], false], ["repeats", "ENTITY", 322, 329, {"val": "C0205341", "score": 1.0}, ["repeated", "Repeat (qualifier value)"], false], ["complete blood cell count 2 weeks", "ENTITY", 334, 367, {"val": "C0009555", "score": 0.729917049407959}, ["complete blood counts", "CBC, NOS"], false], ["Hb", "ENTITY", 379, 381, {"val": "C0019046", "score": 1.0}, ["Hemoglobin, NOS", "Hemoglobins"], false], ["WBC", "ENTITY", 395, 398, {"val": "C0023508", "score": 1.0}, ["White blood cell count - observation", "Leukocyte Number"], false], ["count", "ENTITY", 399, 404, {"val": "C0750480", "score": 1.0}, ["Count", "count"], false], ["platelets", "ENTITY", 422, 431, {"val": "C0005821", "score": 1.0}, ["platelet blood", "Blood platelet"], false], ["difficulty", "ENTITY", 459, 469, {"val": "C1299586", "score": 1.0}, ["difficulty", "Has difficulty doing"], false], ["reticulocyte", "ENTITY", 484, 496, {"val": "C0035286", "score": 1.0}, ["Reticulocyte", "Marrow reticulocyte"], false], ["elevated", "ENTITY", 526, 534, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false], ["obstetrician", "ENTITY", 555, 567, {"val": "C0334897", "score": 0.9999999403953552}, ["Obstetricians", "obstetrician"], false], ["requests", "ENTITY", 568, 576, {"val": "C1272683", "score": 1.0}, ["Request", "request"], false], ["hematology", "ENTITY", 579, 589, {"val": "C0018943", "score": 0.9999999403953552}, ["Hematologic", "Hematology"], false], ["consult", "ENTITY", 590, 597, {"val": "C0009818", "score": 1.0}, ["Consulting with (procedure)", "consulted"], false], ["results", "ENTITY", 624, 631, {"val": "C0456984", "score": 0.8586957454681396}, ["Diagnostic Test Result", "test results"], false], ["Negative", "ENTITY", 644, 652, {"val": "C0205160", "score": 0.9999999403953552}, ["out ruled", "negative"], false], ["DAT", "ENTITY", 653, 656, {"val": "C0002395", "score": 1.0}, ["Alzheimer's disease, NOS", "Alzheimer Type Senile Dementia"], false], ["normal clotting screen", "ENTITY", 658, 680, {"val": "C0005790", "score": 0.8781657814979553}, ["coagulation study", "Coagulation Procedures"], false], ["elevated", "ENTITY", 682, 690, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false], ["LDH", "ENTITY", 691, 694, {"val": "C0022917", "score": 0.9999998807907104}, ["L-Lactate Dehydrogenase", "(S)-Lactate:NAD+ oxidoreductase"], false], ["normal urea", "ENTITY", 708, 719, {"val": "C0205307", "score": 0.7457341551780701}, ["UNREMARKABLE", "Normal (qualifier value)"], false], ["electrolytes", "ENTITY", 724, 736, {"val": "C0013832", "score": 1.0}, ["Electrolyte (substance)", "ELECTROLYTES"], false], ["alanine aminotransferase", "ENTITY", 745, 769, {"val": "C0001899", "score": 1.0}, ["alanine aminotransferase", "alanine transaminase (ALT)"], false], ["ALT", "ENTITY", 771, 774, {"val": "C0001899", "score": 1.0}, ["alanine aminotransferase", "alanine transaminase (ALT)"], false], ["anisocytosis", "ENTITY", 777, 789, {"val": "C0221278", "score": 0.9999998807907104}, ["Anisocytosis (morphologic abnormality)", "RBC's - anisocytosis"], false], ["poikilocytosis", "ENTITY", 791, 805, {"val": "C0221281", "score": 0.9999999403953552}, ["Poikilocytosis (finding)", "poikilocytosis"], false], ["fragments", "ENTITY", 810, 819, {"val": "C0332255", "score": 1.0}, ["FRAGMENT", "Fragmented"], true], ["agglutination", "ENTITY", 824, 837, {"val": "C0001801", "score": 1.0}, ["Agglutination, function (observable entity)", "agglutination"], true], ["polychromasia", "ENTITY", 839, 852, {"val": "C0333942", "score": 0.9999998807907104}, ["Polychromasia", "polychromatophilia"], true], ["presence", "ENTITY", 857, 865, {"val": "C0150312", "score": 1.0}, ["Presence of", "present"], true], ["hemosiderin", "ENTITY", 869, 880, {"val": "C0019113", "score": 1.0}, ["hemosiderin", "Hemosiderins"], true], ["urine", "ENTITY", 888, 893, {"val": "C0042036", "score": 0.9999998807907104}, ["Piss", "Urine (substance)"], true]]], "age": 27.0, "gender": "Female"} +{"id": "201515", "raw_text": "Karen is a 72-year-old woman with hypertension and type 2 diabetes, who was hospitalized for cryptogenic stroke two weeks ago. At the time, computed tomography was negative for brain hemorrhage and she was given thrombolytic therapy with resolution of her symptoms. Transesophageal echocardiogram and magnetic resonance angiogram of brain and great vessels found no evidence of abnormalities. She presents currently with a blood pressure of 120/70 mm Hg, normal glucose, and normal sinus rhythm on a 12-lead electrocardiogram. She reports history of occasional palpitations, shortness of breath and chest pain lasting for a few minutes and then stopping on their own.", "text_sents": ["Karen is a 72-year-old woman with hypertension and type 2 diabetes, who was hospitalized for cryptogenic stroke two weeks ago.", "At the time, computed tomography was negative for brain hemorrhage and she was given thrombolytic therapy with resolution of her symptoms.", "Transesophageal echocardiogram and magnetic resonance angiogram of brain and great vessels found no evidence of abnormalities.", "She presents currently with a blood pressure of 120/70 mm Hg, normal glucose, and normal sinus rhythm on a 12-lead electrocardiogram.", "She reports history of occasional palpitations, shortness of breath and chest pain lasting for a few minutes and then stopping on their own."], "filtered_sents": null, "ent_sents": [[["Karen", "ENTITY", 0, 5, {"val": "C1324112", "score": 0.7091526985168457}, ["(2R)-hydroxycarboxylate-viologen-oxidoreductase activity", "2-oxo acid reductase activity"], false], ["woman", "ENTITY", 23, 28, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["hypertension", "ENTITY", 34, 46, {"val": "C0020538", "score": 1.0}, ["Hypertension, arterial", "HYPERTENSION ARTERIAL"], false], ["type 2 diabetes", "ENTITY", 51, 66, {"val": "C0011860", "score": 1.0}, ["Diabetes Mellitus, Type II", "diabetes type ii"], false], ["hospitalized", "ENTITY", 76, 88, {"val": "C0701159", "score": 1.0}, ["hospitalized", "HOSPITALIZED"], false], ["weeks", "ENTITY", 116, 121, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["time", "ENTITY", 134, 138, {"val": "C0040223", "score": 1.0}, ["Time (property) (qualifier value)", "Time Dimension"], false], ["computed tomography", "ENTITY", 140, 159, {"val": "C0040405", "score": 0.9999999403953552}, ["Computerized tomography", "cat scans"], false], ["negative", "ENTITY", 164, 172, {"val": "C0205160", "score": 0.9999999403953552}, ["out ruled", "negative"], false], ["brain hemorrhage", "ENTITY", 177, 193, {"val": "C0553692", "score": 1.0}, ["Hemorrhagic Stroke", "brain haemorrhage"], true], ["thrombolytic therapy", "ENTITY", 212, 232, {"val": "C0040044", "score": 1.0}, ["Thrombolysis, Therapeutic", "Therapies, Thrombolytic"], true], ["resolution", "ENTITY", 238, 248, {"val": "C1514893", "score": 1.0}, ["Resolution", "Pathologic Process Resolution"], true], ["symptoms", "ENTITY", 256, 264, {"val": "C0683368", "score": 0.9999998807907104}, ["symptoms"], true], ["Transesophageal echocardiogram", "ENTITY", 266, 296, {"val": "C0206054", "score": 1.0}, ["Echocardiography, Transesophageal", "Transoesophageal echocardiogram"], false], ["magnetic resonance angiogram", "ENTITY", 301, 329, {"val": "C3891069", "score": 1.0}, ["Magnetic Resonance Angiogram", "MRI-Based Angiogram"], false], ["brain", "ENTITY", 333, 338, {"val": "C0006104", "score": 1.0}, ["brains", "cerebral"], false], ["great vessels", "ENTITY", 343, 356, {"val": "C0225991", "score": 1.0}, ["Structure of great blood vessel (organ) (body structure)", "Great blood vessel (organ)"], false], ["evidence", "ENTITY", 366, 374, {"val": "C3887511", "score": 1.0}, ["Evidence"], true], ["abnormalities", "ENTITY", 378, 391, {"val": "C0000768", "score": 1.0}, ["DEFECT/DEFORMITY, CONGENITAL", "dysgenesis"], true], ["blood pressure", "ENTITY", 423, 437, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["normal glucose", "ENTITY", 455, 469, {"val": "C0860800", "score": 1.0}, ["normal glucose"], false], ["normal sinus rhythm", "ENTITY", 475, 494, {"val": "C0232202", "score": 0.9999999403953552}, ["normal sinus rhythm", "Cardiac rhythm, normal"], false], ["12-lead electrocardiogram", "ENTITY", 500, 525, {"val": "C0179504", "score": 0.8366581201553345}, ["CABLE, ELECTRODE", "ekg lead"], false], ["reports history", "ENTITY", 531, 546, {"val": "C0684224", "score": 0.7454851865768433}, ["Reports", "Report (record artifact)"], false], ["palpitations", "ENTITY", 561, 573, {"val": "C0030252", "score": 1.0}, ["Palpitation", "heart throbbing"], false], ["shortness of breath", "ENTITY", 575, 594, {"val": "C0013404", "score": 1.0}, ["DYSPNOEA", "Dyspnoea, NOS"], false], ["chest pain", "ENTITY", 599, 609, {"val": "C0008031", "score": 1.0}, ["pain thoracic", "PAIN CHEST"], false], ["minutes", "ENTITY", 628, 635, {"val": "C0439232", "score": 1.0}, ["minute", "minutes"], false]]], "age": 72.0, "gender": "Female"} +{"id": "201516", "raw_text": "A 4 year old boy presents to the emergency room with wheezing. He has had a history of allergic rhinitis, but no history of wheezing. His mother reports that 5 hours ago patient was playing in the backyard sandbox when she heard him suddenly start coughing. The coughing lasted only moments, but he has been audibly wheezing since. Mother was concerned, because his breathing has not returned to normal, so she brought him to the ED. On exam, the child is playful and well appearing. Wheezing is heard in the mid-right chest area. O2 sats are 100% on room air.", "text_sents": ["A 4 year old boy presents to the emergency room with wheezing.", "He has had a history of allergic rhinitis, but no history of wheezing.", "His mother reports that 5 hours ago patient was playing in the backyard sandbox when she heard him suddenly start coughing.", "The coughing lasted only moments, but he has been audibly wheezing since.", "Mother was concerned, because his breathing has not returned to normal, so she brought him to the ED.", "On exam, the child is playful and well appearing.", "Wheezing is heard in the mid-right chest area.", "O2 sats are 100% on room air."], "filtered_sents": null, "ent_sents": [[["year", "ENTITY", 4, 8, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["emergency room", "ENTITY", 33, 47, {"val": "C0562508", "score": 1.0}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["wheezing", "ENTITY", 53, 61, {"val": "C0043144", "score": 1.0}, ["Wheezy", "Wheezing, NOS"], false], ["history", "ENTITY", 76, 83, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["allergic rhinitis", "ENTITY", 87, 104, {"val": "C1334103", "score": 1.0}, ["IL13 gene", "IL13"], false], ["wheezing", "ENTITY", 124, 132, {"val": "C0043144", "score": 1.0}, ["Wheezy", "Wheezing, NOS"], true], ["mother", "ENTITY", 138, 144, {"val": "C0026591", "score": 1.0}, ["mothers", "Maternal"], false], ["reports", "ENTITY", 145, 152, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["patient", "ENTITY", 170, 177, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["coughing", "ENTITY", 248, 256, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["coughing", "ENTITY", 262, 270, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["audibly wheezing", "ENTITY", 308, 324, {"val": "C0043144", "score": 0.7417908310890198}, ["Wheezy", "Wheezing, NOS"], false], ["Mother", "ENTITY", 332, 338, {"val": "C0026591", "score": 1.0}, ["mothers", "Maternal"], false], ["breathing", "ENTITY", 366, 375, {"val": "C0004048", "score": 1.0}, ["Inhaling", "inspiratory"], false], ["normal", "ENTITY", 396, 402, {"val": "C0205307", "score": 1.0}, ["UNREMARKABLE", "Normal (qualifier value)"], true], ["ED", "ENTITY", 430, 432, {"val": "C0242350", "score": 1.0}, ["Difficulty getting a full erection", "Failure of erection"], true], ["exam", "ENTITY", 437, 441, {"val": "C0582103", "score": 1.0}, ["Medical assessment (procedure)", "Medical Assessment"], false], ["child", "ENTITY", 447, 452, {"val": "C0008059", "score": 1.0}, ["Children (0-21)", "0-11 years old"], false], ["Wheezing", "ENTITY", 484, 492, {"val": "C0043144", "score": 1.0}, ["Wheezy", "Wheezing, NOS"], false], ["room air", "ENTITY", 551, 559, {"val": "C1547703", "score": 0.7765036821365356}, ["Room"], false]]], "age": 4.0, "gender": "Male"} +{"id": "201517", "raw_text": "A 32 year old female with no previous medical history presents to clinic to discuss lab results from her most recent pap smear. She reports no complaints and is in general good health. The results of her PAP were cytology negative, HPV positive.", "text_sents": ["A 32 year old female with no previous medical history presents to clinic to discuss lab results from her most recent pap smear.", "She reports no complaints and is in general good health.", "The results of her PAP were cytology negative, HPV positive."], "filtered_sents": null, "ent_sents": [[["year", "ENTITY", 5, 9, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["female", "ENTITY", 14, 20, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["medical history", "ENTITY", 38, 53, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], true], ["clinic", "ENTITY", 66, 72, {"val": "C0002424", "score": 0.9999999403953552}, ["Outpatient Care Facility", "clinic outpatient"], true], ["lab results", "ENTITY", 84, 95, {"val": "C3244125", "score": 1.0}, [], true], ["pap smear", "ENTITY", 117, 126, {"val": "C0079104", "score": 1.0}, ["Cervical Smear", "Smears, Cervical"], true], ["reports", "ENTITY", 132, 139, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["no complaints", "ENTITY", 140, 153, {"val": "C0424577", "score": 1.0}, ["no complaints", "No complaints (finding)"], false], ["general good health", "ENTITY", 164, 183, {"val": "C1277245", "score": 0.9999998807907104}, ["General health good (finding)"], true], ["results", "ENTITY", 189, 196, {"val": "C0456984", "score": 0.8586957454681396}, ["Diagnostic Test Result", "test results"], false], ["PAP", "ENTITY", 204, 207, {"val": "C0428642", "score": 1.0}, ["artery pressures pulmonary", "Pulmonary artery pressure (observable entity)"], false], ["cytology negative", "ENTITY", 213, 230, {"val": "C0010818", "score": 0.7446895241737366}, ["Cytological Procedure", "Cytology technique (qualifier value)"], false], ["HPV", "ENTITY", 232, 235, {"val": "C0021344", "score": 1.0}, ["Human Papilloma Virus", "human papilloma viruses"], false], ["positive", "ENTITY", 236, 244, {"val": "C1446409", "score": 1.0}, ["ruling", "Positive (qualifier value)"], false]]], "age": 32.0, "gender": "Female"} +{"id": "201518", "raw_text": "A 65 yo African-American male with shortness of breath related to exertion that has been worsening over the past three weeks. He also has difficulty breathing when lying flat and has started using two to three extra pillows at night. Significant physical exam findings include bibasilar lung crackles, pitting ankle edema and jugular venous distension.", "text_sents": ["A 65 yo African-American male with shortness of breath related to exertion that has been worsening over the past three weeks.", "He also has difficulty breathing when lying flat and has started using two to three extra pillows at night.", "Significant physical exam findings include bibasilar lung crackles, pitting ankle edema and jugular venous distension."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["African-American", "ENTITY", 8, 24, {"val": "C0085756", "score": 1.0}, ["African American (ethnic group)", "United States Black"], false], ["male", "ENTITY", 25, 29, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["shortness", "ENTITY", 35, 44, {"val": "C0349588", "score": 0.8467087745666504}, ["SS - Short stature", "short stature"], false], ["breath", "ENTITY", 48, 54, {"val": "C0225386", "score": 0.9999999403953552}, ["Respiratory air, NOS", "Portion of respiratory air"], false], ["exertion", "ENTITY", 66, 74, {"val": "C0015264", "score": 0.9999999403953552}, ["exertions", "exerted"], false], ["worsening", "ENTITY", 89, 98, {"val": "C0332271", "score": 0.9999999403953552}, ["Deteriorating", "worse"], false], ["weeks", "ENTITY", 119, 124, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["difficulty", "ENTITY", 138, 148, {"val": "C1299586", "score": 1.0}, ["difficulty", "Has difficulty doing"], false], ["flat", "ENTITY", 170, 174, {"val": "C0205324", "score": 1.0}, ["flat shape", "planum"], false], ["extra pillows", "ENTITY", 210, 223, {"val": "C0182291", "score": 0.8589611053466797}, ["pillow", "Pillow"], false], ["night", "ENTITY", 227, 232, {"val": "C0240526", "score": 1.0}, ["Nocturnal", "nocte"], false], ["physical exam", "ENTITY", 246, 259, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["findings", "ENTITY", 260, 268, {"val": "C2607943", "score": 1.0}, ["findings"], false], ["bibasilar lung crackles", "ENTITY", 277, 300, {"val": "C0034642", "score": 0.7494684457778931}, ["Respiratory crepitations", "Rales, NOS"], false], ["pitting ankle edema", "ENTITY", 302, 321, {"val": "C0333243", "score": 0.8331294059753418}, ["oedema pitting", "edema pitted"], false], ["jugular", "ENTITY", 326, 333, {"val": "C0022427", "score": 0.8658504486083984}, ["Jugular Veins", "JUGULAR VEIN"], false], ["venous distension", "ENTITY", 334, 351, {"val": "C0012359", "score": 0.7562330961227417}, ["Dilation", "ectasias"], false]]], "age": 65.0, "gender": "Male"} +{"id": "201519", "raw_text": "A 66yo female with significant smoking history and chronic cough for the past two years presents with recent, progressive shortness of breath. She is in moderate respiratory distress after walking from the waiting room to the examination room. Physical exam reveals mildly distended neck veins, a barrel-shaped chest, and moderate inspiratory and expiratory wheezes. She has smoked 1 to 2 packs per days for the past 47 years.", "text_sents": ["A 66yo female with significant smoking history and chronic cough for the past two years presents with recent, progressive shortness of breath.", "She is in moderate respiratory distress after walking from the waiting room to the examination room.", "Physical exam reveals mildly distended neck veins, a barrel-shaped chest, and moderate inspiratory and expiratory wheezes.", "She has smoked 1 to 2 packs per days for the past 47 years."], "filtered_sents": null, "ent_sents": [[["female", "ENTITY", 7, 13, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["smoking history", "ENTITY", 31, 46, {"val": "C1519384", "score": 1.0}, ["Smoking History", "Tobacco Smoking History"], false], ["chronic cough", "ENTITY", 51, 64, {"val": "C0010201", "score": 1.0}, ["Chronic cough", "chronic coughing"], false], ["years", "ENTITY", 82, 87, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["progressive", "ENTITY", 110, 121, {"val": "C0205329", "score": 1.0}, ["progressing", "Progressive (qualifier value)"], false], ["moderate", "ENTITY", 153, 161, {"val": "C0205081", "score": 1.0}, ["Moderately", "moderate"], false], ["respiratory distress", "ENTITY", 162, 182, {"val": "C0476273", "score": 1.0}, ["Breathing difficulties", "Respiratory distress"], false], ["walking", "ENTITY", 189, 196, {"val": "C0080331", "score": 1.0}, ["walking", "Ambulation"], false], ["examination", "ENTITY", 226, 237, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["Physical exam", "ENTITY", 244, 257, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["mildly", "ENTITY", 266, 272, {"val": "C0750532", "score": 1.0}, ["mildly"], false], ["barrel-shaped chest", "ENTITY", 297, 316, {"val": "C0264172", "score": 1.0}, ["barrel chest", "barreled chest"], false], ["moderate", "ENTITY", 322, 330, {"val": "C0205081", "score": 1.0}, ["Moderately", "moderate"], false], ["inspiratory", "ENTITY", 331, 342, {"val": "C0004048", "score": 0.9999998807907104}, ["Inhaling", "inspiratory"], false], ["expiratory wheezes", "ENTITY", 347, 365, {"val": "C0043144", "score": 0.7603293657302856}, ["Wheezy", "Wheezing, NOS"], false], ["packs", "ENTITY", 389, 394, {"val": "C1968515", "score": 0.9999999403953552}, ["pack", "Pack"], false], ["days", "ENTITY", 399, 403, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["years", "ENTITY", 420, 425, {"val": "C0439234", "score": 1.0}, ["a", "year"], false]]], "age": 66.0, "gender": "Female"} +{"id": "201520", "raw_text": "An 89-year-old man was brought to the emergency department by his wife and son after six months of progressive changes in cognition and personality. He began to have poor memory, difficulty expressing himself, and exhibited unusual behaviors, such as pouring milk onto the table and undressing immediately after getting dressed. He is unable to dress, bathe, use the toilet, or walk independently. On examination the patient's temperature was 36.5C (97.7F), the heart rate 61 bpm in an irregular rhythm, the blood pressure 144/78 mm Hg, and the respiratory rate 18 bpm. The patient was alert and oriented to self and city but not year. He frequently interrupted the examiner. He repeatedly reached out to grab things in front of him, including the examiner's tie and face. He could not spell the word \"world\" backward, could not follow commands involving multiple steps and was unable to perform simple calculations. His speech was fluent, but he often used similar-sounding word substitutions. He could immediately recall three out of three words but recalled none of them after 5 minutes. Examination of the cranial nerves revealed clinically significant paratonic rigidity. Myoclonic jerks were seen in the arms, with symmetrically brisk reflexes. The reflexes in the legs were normal.", "text_sents": ["An 89-year-old man was brought to the emergency department by his wife and son after six months of progressive changes in cognition and personality.", "He began to have poor memory, difficulty expressing himself, and exhibited unusual behaviors, such as pouring milk onto the table and undressing immediately after getting dressed. He is unable to dress, bathe, use the toilet, or walk independently.", "On examination the patient's temperature was 36.5C (97.7F), the heart rate 61 bpm in an irregular rhythm, the blood pressure 144/78 mm Hg, and the respiratory rate 18 bpm.", "The patient was alert and oriented to self and city but not year.", "He frequently interrupted the examiner.", "He repeatedly reached out to grab things in front of him, including the examiner's tie and face. He could not spell the word \"world\" backward, could not follow commands involving multiple steps and was unable to perform simple calculations.", "His speech was fluent, but he often used similar-sounding word substitutions.", "He could immediately recall three out of three words but recalled none of them after 5 minutes.", "Examination of the cranial nerves revealed clinically significant paratonic rigidity.", "Myoclonic jerks were seen in the arms, with symmetrically brisk reflexes.", "The reflexes in the legs were normal."], "filtered_sents": null, "ent_sents": [[["man", "ENTITY", 15, 18, {"val": "C0025266", "score": 1.0}, ["Human, Male", "Man"], false], ["emergency department", "ENTITY", 38, 58, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["wife", "ENTITY", 66, 70, {"val": "C0242665", "score": 1.0}, ["Wife (person)", "wife"], false], ["son", "ENTITY", 75, 78, {"val": "C0037683", "score": 0.9999998807907104}, ["Sons", "Son, NOS"], false], ["months", "ENTITY", 89, 95, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["progressive", "ENTITY", 99, 110, {"val": "C0205329", "score": 1.0}, ["progressing", "Progressive (qualifier value)"], false], ["changes", "ENTITY", 111, 118, {"val": "C0392747", "score": 1.0}, ["Adapted", "Changing"], false], ["cognition", "ENTITY", 122, 131, {"val": "C0009240", "score": 1.0}, ["Cognition", "Function, Cognitive"], false], ["personality", "ENTITY", 136, 147, {"val": "C0003944", "score": 1.0}, ["personality", "As If Personality"], false], ["poor memory", "ENTITY", 166, 177, {"val": "C0233794", "score": 1.0}, ["memory deficits", "MEMORY IMPAIRMENT"], false], ["expressing", "ENTITY", 190, 200, {"val": "C0017262", "score": 0.8405760526657104}, ["Gene expression", "gene expression"], false], ["unusual", "ENTITY", 224, 231, {"val": "C2700116", "score": 1.0}, ["Peculiar"], false], ["behaviors", "ENTITY", 232, 241, {"val": "C0004927", "score": 1.0}, ["behavioural response to stimulus", "Behavior finding"], false], ["pouring milk", "ENTITY", 251, 263, {"val": "C0026131", "score": 0.7141600251197815}, ["BREAST MILK", "MILK"], false], ["table", "ENTITY", 273, 278, {"val": "C0039224", "score": 1.0}, ["table", "Table"], false], ["undressing", "ENTITY", 283, 293, {"val": "C4289668", "score": 0.7648077607154846}, ["Dressing or Undressing Without Help", "Dressing or undressing (without assistance)"], false], ["dress", "ENTITY", 345, 350, {"val": "C0453926", "score": 1.0}, ["Dress (physical object)", "dresses"], false], ["bathe", "ENTITY", 352, 357, {"val": "C0150141", "score": 1.0}, ["Bath", "bath"], false], ["toilet", "ENTITY", 367, 373, {"val": "C0184958", "score": 1.0}, ["Toilet", "Toilet (procedure)"], false], ["walk", "ENTITY", 378, 382, {"val": "C0080331", "score": 1.0}, ["walking", "Ambulation"], false], ["independently", "ENTITY", 383, 396, {"val": "C0085862", "score": 0.7724158763885498}, ["independence", "autonomy"], false], ["examination", "ENTITY", 401, 412, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["patient's", "ENTITY", 417, 426, {"val": "C0030706", "score": 0.8831718564033508}, ["patient rights", "Patients' Right"], false], ["temperature", "ENTITY", 427, 438, {"val": "C0005903", "score": 1.0}, ["Body temperature finding (finding)", "Temperature (property) (qualifier value)"], false], ["heart rate", "ENTITY", 462, 472, {"val": "C0018810", "score": 1.0}, ["heart rate", "Heart Rates"], false], ["bpm", "ENTITY", 476, 479, {"val": "C0439385", "score": 1.0}, ["beats per minute", "beats/min"], false], ["irregular", "ENTITY", 486, 495, {"val": "C0205271", "score": 1.0}, ["Irregular", "irregular"], false], ["rhythm", "ENTITY", 496, 502, {"val": "C0871269", "score": 1.0}, ["rhythm", "rhythms"], false], ["blood pressure", "ENTITY", 508, 522, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["respiratory rate", "ENTITY", 545, 561, {"val": "C0231832", "score": 1.0}, ["Respiratory Rates", "RR - Respiratory rate"], false], ["bpm", "ENTITY", 565, 568, {"val": "C0439385", "score": 1.0}, ["beats per minute", "beats/min"], false], ["patient", "ENTITY", 574, 581, {"val": "C0030705", "score": 1.0}, ["patient", "Patients"], false], ["self", "ENTITY", 608, 612, {"val": "C0036588", "score": 1.0}, ["self (ego)", "Self"], false], ["city", "ENTITY", 617, 621, {"val": "C0008848", "score": 1.0}, ["Cities", "city"], false], ["interrupted", "ENTITY", 650, 661, {"val": "C0443239", "score": 1.0}, ["interrupts", "interrupting"], false], ["examiner", "ENTITY", 666, 674, {"val": "C0025082", "score": 0.8137836456298828}, ["Medical Examiners", "ME"], false], ["face", "ENTITY", 767, 771, {"val": "C0015450", "score": 1.0}, ["FACE", "facial"], false], ["\"world", "ENTITY", 801, 807, {"val": "C2700280", "score": 0.9320521950721741}, [], true], ["backward", "ENTITY", 809, 817, {"val": "C0439781", "score": 0.9999999403953552}, ["backward", "backwards"], true], ["commands", "ENTITY", 836, 844, {"val": "C3639196", "score": 1.0}, ["ADCCMD", "Commands"], true], ["multiple", "ENTITY", 855, 863, {"val": "C0439064", "score": 1.0}, ["Plural", "Numerous (qualifier value)"], false], ["steps", "ENTITY", 864, 869, {"val": "C1261552", "score": 1.0}, ["Step", "steps"], false], ["calculations", "ENTITY", 903, 915, {"val": "C1441506", "score": 0.8823416829109192}, ["Calculation technique", "calculated"], false], ["speech", "ENTITY", 921, 927, {"val": "C0037817", "score": 1.0}, ["speech function", "Talking"], false], ["word substitutions", "ENTITY", 975, 993, {"val": "C1555721", "score": 0.7183680534362793}, ["Substitution"], false], ["recall", "ENTITY", 1016, 1022, {"val": "C0034770", "score": 1.0}, ["Remember", "recalling"], false], ["words", "ENTITY", 1042, 1047, {"val": "C0003537", "score": 0.809653639793396}, ["Alogias", "Anepia"], false], ["minutes", "ENTITY", 1082, 1089, {"val": "C0439232", "score": 1.0}, ["minute", "minutes"], false], ["cranial nerves", "ENTITY", 1110, 1124, {"val": "C0010268", "score": 0.9999998807907104}, ["Nervus cranialis", "CRANIAL NERVES"], false], ["clinically significant", "ENTITY", 1134, 1156, {"val": "C2985739", "score": 0.89369136095047}, ["clinicallySignificantIndicator"], false], ["paratonic rigidity", "ENTITY", 1157, 1175, {"val": "C0026837", "score": 0.7576265931129456}, ["Rigidity, Muscle", "Rigor"], false], ["Myoclonic jerks", "ENTITY", 1177, 1192, {"val": "C0027066", "score": 1.0}, ["Myoclonus", "myoclonic jerking"], false], ["arms", "ENTITY", 1210, 1214, {"val": "C0206655", "score": 1.0}, ["RMSA", "Rhabdomyosarcoma, Alveolar"], false], ["symmetrically brisk reflexes", "ENTITY", 1221, 1249, {"val": "C2673700", "score": 0.7615644335746765}, ["Brisk reflexes"], false], ["reflexes", "ENTITY", 1255, 1263, {"val": "C0034929", "score": 1.0}, ["Reflex, NOS", "reflex action"], false], ["legs", "ENTITY", 1271, 1275, {"val": "C1140621", "score": 1.0}, ["Structure of lower extremity from knee to ankle", "Lower hindlimb"], false]]], "age": 89.0, "gender": "Male"} +{"id": "201521", "raw_text": "A 32-year-old male presents to your office complaining of diarrhea, abdominal cramping and flatulence. Stools are greasy and foul-smelling. He also has loss of appetite and malaise. He recently returned home from a hiking trip in the mountains where he drank water from natural sources. An iodine-stained stool smear revealed ellipsoidal cysts with smooth, well-defined walls and 2+ nuclei.", "text_sents": ["A 32-year-old male presents to your office complaining of diarrhea, abdominal cramping and flatulence.", "Stools are greasy and foul-smelling.", "He also has loss of appetite and malaise.", "He recently returned home from a hiking trip in the mountains where he drank water from natural sources.", " An iodine-stained stool smear revealed ellipsoidal cysts with smooth, well-defined walls and 2+ nuclei."], "filtered_sents": null, "ent_sents": [[["male", "ENTITY", 14, 18, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["diarrhea", "ENTITY", 58, 66, {"val": "C0011991", "score": 0.9999999403953552}, ["Diarrhea, NOS", "Diarrhea NOS"], false], ["abdominal cramping", "ENTITY", 68, 86, {"val": "C0000729", "score": 1.0}, ["abdominal cramp", "Cramp, Abdominal"], false], ["flatulence", "ENTITY", 91, 101, {"val": "C0016204", "score": 0.9999999403953552}, ["winding", "pass wind"], false], ["Stools", "ENTITY", 103, 109, {"val": "C0015733", "score": 0.9999998807907104}, ["STOOL", "poop"], false], ["greasy", "ENTITY", 114, 120, {"val": "C0234925", "score": 0.8138034343719482}, ["skin oily", "oily skin"], false], ["loss of appetite", "ENTITY", 152, 168, {"val": "C0003123", "score": 1.0}, ["lack of appetite", "anorexic"], false], ["malaise", "ENTITY", 173, 180, {"val": "C0231218", "score": 1.0}, ["Malaise", "Vague bodily discomfort"], false], ["hiking", "ENTITY", 215, 221, {"val": "C4255280", "score": 1.0}, ["Hiking", "Hiking (qualifier value)"], false], ["mountains", "ENTITY", 234, 243, {"val": "C0442533", "score": 1.0}, ["Mountain (environment)", "mountains"], false], ["natural", "ENTITY", 270, 277, {"val": "C0205296", "score": 1.0}, ["Natural (qualifier value)", "natural"], false], ["sources", "ENTITY", 278, 285, {"val": "C0449416", "score": 1.0}, ["sources", "Source"], false], ["ellipsoidal cysts", "ENTITY", 327, 344, {"val": "C1880490", "score": 0.7285868525505066}, [], false], ["smooth", "ENTITY", 350, 356, {"val": "C0205357", "score": 1.0}, ["Smooth", "smooth"], false], ["well-defined walls", "ENTITY", 358, 376, {"val": "C0442825", "score": 0.837708055973053}, ["Well defined (qualifier value)", "Well-defined"], false], ["nuclei", "ENTITY", 384, 390, {"val": "C0007610", "score": 0.8452460169792175}, ["Nucleus, Cell", "Nucleus"], false]]], "age": 32.0, "gender": "Male"} +{"id": "201522", "raw_text": "A 65-year-old male with a history of tuberculosis has started to complain of productive cough with tinges of blood. Chest X-ray reveals a round opaque mass within a cavity in his left upper lobe. The spherical mass moved in the cavity during supine and prone CT imaging. Culture of the sputum revealed an organism with septated, low-angle branching hyphae that had straight, parallel walls.", "text_sents": ["A 65-year-old male with a history of tuberculosis has started to complain of productive cough with tinges of blood.", "Chest X-ray reveals a round opaque mass within a cavity in his left upper lobe.", "The spherical mass moved in the cavity during supine and prone CT imaging.", "Culture of the sputum revealed an organism with septated, low-angle branching hyphae that had straight, parallel walls."], "filtered_sents": null, "ent_sents": [[["male", "ENTITY", 14, 18, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["history", "ENTITY", 26, 33, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["tuberculosis", "ENTITY", 37, 49, {"val": "C0041296", "score": 1.0}, ["Tuberculous (qualifier value)", "TB"], false], ["complain", "ENTITY", 65, 73, {"val": "C0277786", "score": 0.897092878818512}, ["Main Complain", "CC"], false], ["productive cough", "ENTITY", 77, 93, {"val": "C0239134", "score": 1.0}, ["Moist cough", "Producing sputum"], false], ["tinges of blood", "ENTITY", 99, 114, {"val": "C0005767", "score": 0.725709080696106}, ["Blood", "Portion of blood"], false], ["Chest X-ray", "ENTITY", 116, 127, {"val": "C0039985", "score": 1.0}, ["Chest Radiography", "thoracic x-ray"], false], ["round opaque mass", "ENTITY", 138, 155, {"val": "C0029053", "score": 0.7213828563690186}, ["OPACITY", "increased density"], false], ["cavity", "ENTITY", 165, 171, {"val": "C0011334", "score": 1.0}, ["caries", "decaying tooth"], false], ["left upper lobe", "ENTITY", 179, 194, {"val": "C1261076", "score": 1.0}, ["Upper Lobe of Left Lung-LUL", "LUL"], false], ["cavity", "ENTITY", 228, 234, {"val": "C0011334", "score": 1.0}, ["caries", "decaying tooth"], false], ["supine", "ENTITY", 242, 248, {"val": "C0038846", "score": 1.0}, ["back lying", "Dorsal Positions"], false], ["CT imaging", "ENTITY", 259, 269, {"val": "C0011923", "score": 0.8589034080505371}, ["Imaging", "Diagnostic imaging, not elsewhere classified"], false], ["Culture", "ENTITY", 271, 278, {"val": "C0010453", "score": 0.9999999403953552}, ["Cultural", "culture"], false], ["sputum", "ENTITY", 286, 292, {"val": "C0038056", "score": 1.0}, ["Expectoration", "sputum"], false], ["organism", "ENTITY", 305, 313, {"val": "C0029235", "score": 1.0}, ["living organisms", "live organisms"], false], ["septated", "ENTITY", 319, 327, {"val": "C1519248", "score": 0.865687906742096}, ["septate"], false], ["straight", "ENTITY", 365, 373, {"val": "C0019421", "score": 1.0}, ["heterosexual", "Heterosexual state"], false], ["parallel walls", "ENTITY", 375, 389, {"val": "C2348042", "score": 0.7572125196456909}, ["Parallel", "Parallel Lesion"], false]]], "age": 65.0, "gender": "Male"} +{"id": "201523", "raw_text": "An 18-year-old male returning from a recent vacation in Asia presents to the ER with a sudden onset of high fever, chills, facial flushing, epistaxis and severe headache and joint pain. His complete blood count reveals leukopenia, increased hematocrit concentration and thrombocytopenia.", "text_sents": ["An 18-year-old male returning from a recent vacation in Asia presents to the ER with a sudden onset of high fever, chills, facial flushing, epistaxis and severe headache and joint pain.", "His complete blood count reveals leukopenia, increased hematocrit concentration and thrombocytopenia."], "filtered_sents": null, "ent_sents": [[["male", "ENTITY", 15, 19, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["vacation", "ENTITY", 44, 52, {"val": "C0680199", "score": 1.0}, ["vacationing", "VACATION"], false], ["Asia", "ENTITY", 56, 60, {"val": "C0003980", "score": 1.0}, ["Asia (geographic location)", "Asia"], false], ["ER", "ENTITY", 77, 79, {"val": "C0014239", "score": 1.0}, ["Ergastoplasm", "Reticulum endoplasmicum"], false], ["sudden onset", "ENTITY", 87, 99, {"val": "C1272517", "score": 1.0}, ["sudden onset of", "Sudden onset"], false], ["high fever", "ENTITY", 103, 113, {"val": "C0743973", "score": 1.0}, ["fever high", "fevers high"], false], ["chills", "ENTITY", 115, 121, {"val": "C0085593", "score": 1.0}, ["chilling", "Chill"], false], ["facial flushing", "ENTITY", 123, 138, {"val": "C0016382", "score": 1.0}, ["reddened skin", "face flushing"], false], ["epistaxis", "ENTITY", 140, 149, {"val": "C0014591", "score": 1.0}, ["Nose bleed", "bleeds nose symptom"], false], ["severe", "ENTITY", 154, 160, {"val": "C0205082", "score": 1.0}, ["gravy", "Severe (severity modifier)"], false], ["headache", "ENTITY", 161, 169, {"val": "C0018681", "score": 0.9999998807907104}, ["Cranial Pains", "head pained"], false], ["joint pain", "ENTITY", 174, 184, {"val": "C0003862", "score": 1.0}, ["painful joint", "Joint pain"], false], ["increased", "ENTITY", 231, 240, {"val": "C0205217", "score": 1.0}, ["increased", "augment"], false], ["hematocrit", "ENTITY", 241, 251, {"val": "C0018935", "score": 1.0}, ["Volume, Packed Red-Cell", "Packed Red-Cell Volumes"], false], ["concentration", "ENTITY", 252, 265, {"val": "C0086045", "score": 0.9999999403953552}, ["concentration", "concentration (mental)"], false], ["thrombocytopenia", "ENTITY", 270, 286, {"val": "C0040034", "score": 1.0}, ["THROMBOPENIA", "Thrombopenias"], false]]], "age": 18.0, "gender": "Male"} +{"id": "201524", "raw_text": "A 31 yo male with no significant past medical history presents with productive cough and chest pain. He reports developing cold symptoms one week ago that were improving until two days ago, when he developed a new fever, chills, and worsening cough. He has right-sided chest pain that is aggravated by coughing. His wife also had cold symptoms a week ago but is now feeling well. Vitals signs include temperature 103.4, pulse 105, blood pressure 120/80, and respiratory rate 15. Lung exam reveals expiratory wheezing, decreased breath sounds, and egophany in the left lower lung field.", "text_sents": ["A 31 yo male with no significant past medical history presents with productive cough and chest pain.", "He reports developing cold symptoms one week ago that were improving until two days ago, when he developed a new fever, chills, and worsening cough.", "He has right-sided chest pain that is aggravated by coughing. His wife also had cold symptoms a week ago but is now feeling well.", "Vitals signs include temperature 103.4, pulse 105, blood pressure 120/80, and respiratory rate 15.", "Lung exam reveals expiratory wheezing, decreased breath sounds, and egophany in the left lower lung field."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["male", "ENTITY", 8, 12, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["no significant", "ENTITY", 18, 32, {"val": "C0237881", "score": 0.9427245855331421}, ["significant", "Statistically Significant"], false], ["medical history", "ENTITY", 38, 53, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], true], ["productive", "ENTITY", 68, 78, {"val": "C0035150", "score": 0.8124794960021973}, ["Reproduction", "reproduction"], true], ["chest pain", "ENTITY", 89, 99, {"val": "C0008031", "score": 1.0}, ["pain thoracic", "PAIN CHEST"], true], ["reports", "ENTITY", 104, 111, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["cold symptoms", "ENTITY", 123, 136, {"val": "C0863093", "score": 1.0}, ["symptoms cold", "cold symptom"], false], ["week", "ENTITY", 141, 145, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["improving", "ENTITY", 160, 169, {"val": "C1272745", "score": 1.0}, ["Improving", "improving"], false], ["days", "ENTITY", 180, 184, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["fever", "ENTITY", 214, 219, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["chills", "ENTITY", 221, 227, {"val": "C0085593", "score": 1.0}, ["chilling", "Chill"], false], ["right-sided chest pain", "ENTITY", 257, 279, {"val": "C0444532", "score": 0.8188091516494751}, ["Right sided", "Right"], false], ["aggravated", "ENTITY", 288, 298, {"val": "C0436331", "score": 1.0}, ["Aggravating Factor", "aggravating factors"], false], ["coughing", "ENTITY", 302, 310, {"val": "C0010200", "score": 1.0}, ["COUGHING", "cough symptom"], false], ["wife", "ENTITY", 316, 320, {"val": "C0242665", "score": 1.0}, ["Wife (person)", "wife"], false], ["cold symptoms", "ENTITY", 330, 343, {"val": "C0863093", "score": 1.0}, ["symptoms cold", "cold symptom"], false], ["week", "ENTITY", 346, 350, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["Vitals signs", "ENTITY", 380, 392, {"val": "C0150404", "score": 0.8734443783760071}, ["monitoring vital signs", "Vital signs"], false], ["temperature", "ENTITY", 401, 412, {"val": "C0005903", "score": 1.0}, ["Body temperature finding (finding)", "Temperature (property) (qualifier value)"], false], ["pulse", "ENTITY", 420, 425, {"val": "C0034107", "score": 0.9999998807907104}, ["Pulse taking", "take pulse"], false], ["blood pressure", "ENTITY", 431, 445, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["respiratory rate", "ENTITY", 458, 474, {"val": "C0231832", "score": 1.0}, ["Respiratory Rates", "RR - Respiratory rate"], false], ["expiratory wheezing", "ENTITY", 497, 516, {"val": "C0231875", "score": 0.9999999403953552}, ["Expiratory wheeze", "Expiratory wheezing (finding)"], false], ["decreased", "ENTITY", 518, 527, {"val": "C0205216", "score": 1.0}, ["Decreased by", "decreased"], false], ["left lower lung field", "ENTITY", 563, 584, {"val": "C0929231", "score": 1.0}, ["Left lower lung field"], false]]], "age": 31.0, "gender": "Male"} +{"id": "201525", "raw_text": "A 10-year-old boy comes to the emergency department for evaluation of right knee pain. The child's guardians stated that he had been complaining of knee pain for the past 4 days and it had been getting progressively worse. There was no history of trauma. The day before the visit the boy developed a fever, and over the past day he has become increasingly lethargic. On physical examination blood pressure was 117/75 mm Hg, HR 138 bpm, temperature 38.1 C (100.5 F), respiration 28 bpm, oxygen saturation 97%. There was edema and tenderness of the right thigh and knee, as well as effusion and extremely limited range of motion. Sensation and motor tone were normal. Plain radiography and CT showed an osteolytic lesion.", "text_sents": ["A 10-year-old boy comes to the emergency department for evaluation of right knee pain.", "The child's guardians stated that he had been complaining of knee pain for the past 4 days and it had been getting progressively worse.", "There was no history of trauma.", "The day before the visit the boy developed a fever, and over the past day he has become increasingly lethargic.", "On physical examination blood pressure was 117/75 mm Hg, HR 138 bpm, temperature 38.1 C (100.5 F), respiration 28 bpm, oxygen saturation 97%.", "There was edema and tenderness of the right thigh and knee, as well as effusion and extremely limited range of motion.", "Sensation and motor tone were normal.", "Plain radiography and CT showed an osteolytic lesion."], "filtered_sents": null, "ent_sents": [[["boy", "ENTITY", 14, 17, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["emergency department", "ENTITY", 31, 51, {"val": "C0562508", "score": 0.9999999403953552}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["evaluation", "ENTITY", 56, 66, {"val": "C0220825", "score": 1.0}, ["efficacy assessment", "effectiveness assessment"], false], ["right knee pain", "ENTITY", 70, 85, {"val": "C2202235", "score": 0.9727892875671387}, ["Pain in right knee (finding)"], false], ["guardians", "ENTITY", 99, 108, {"val": "C1274041", "score": 1.0}, ["Guardian", "guardians"], false], ["complaining", "ENTITY", 133, 144, {"val": "C0277786", "score": 0.7898122072219849}, ["Main Complain", "CC"], false], ["knee pain", "ENTITY", 148, 157, {"val": "C0231749", "score": 1.0}, ["knee pain", "PAIN KNEE"], false], ["days", "ENTITY", 173, 177, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["trauma", "ENTITY", 247, 253, {"val": "C0043251", "score": 0.9999999403953552}, ["Wounds and Injuries", "Wounds, Injury"], true], ["day", "ENTITY", 259, 262, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["visit", "ENTITY", 274, 279, {"val": "C0545082", "score": 0.9999999403953552}, ["Encounter", "Visits"], false], ["boy", "ENTITY", 284, 287, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["fever", "ENTITY", 300, 305, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["day", "ENTITY", 325, 328, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["lethargic", "ENTITY", 356, 365, {"val": "C0023380", "score": 0.9999998807907104}, ["lethargy", "Stuporous"], false], ["physical examination blood pressure", "ENTITY", 370, 405, {"val": "C0031809", "score": 0.7262844443321228}, ["Physical Assessment", "examination procedure"], false], ["bpm", "ENTITY", 432, 435, {"val": "C0439385", "score": 1.0}, ["beats per minute", "beats/min"], false], ["temperature", "ENTITY", 437, 448, {"val": "C0005903", "score": 1.0}, ["Body temperature finding (finding)", "Temperature (property) (qualifier value)"], false], ["respiration", "ENTITY", 467, 478, {"val": "C0035203", "score": 0.9999998807907104}, ["functioning respiratory", "ventilation"], false], ["bpm", "ENTITY", 482, 485, {"val": "C0439385", "score": 1.0}, ["beats per minute", "beats/min"], false], ["oxygen saturation", "ENTITY", 487, 504, {"val": "C0369768", "score": 1.0}, ["Oxygen saturation", "oxygen saturation function"], false], ["edema", "ENTITY", 520, 525, {"val": "C0013604", "score": 0.9999999403953552}, ["dropsy", "Edematous"], false], ["tenderness", "ENTITY", 530, 540, {"val": "C0234233", "score": 1.0}, ["soreness", "TENDERNESS (NOS)"], false], ["right thigh", "ENTITY", 548, 559, {"val": "C0230425", "score": 1.0}, ["Structure of right thigh (body structure)", "Right Thigh"], false], ["knee", "ENTITY", 564, 568, {"val": "C0022742", "score": 1.0}, ["Bone structure of knee (body structure)", "Knee"], false], ["effusion", "ENTITY", 581, 589, {"val": "C0013687", "score": 1.0}, ["Effusion (morphologic abnormality)", "Effusions"], false], ["extremely", "ENTITY", 594, 603, {"val": "C0205403", "score": 1.0}, ["Extreme", "Extremely"], false], ["motion", "ENTITY", 621, 627, {"val": "C0026597", "score": 1.0}, ["Motion - physical agent", "motion"], false], ["Sensation", "ENTITY", 629, 638, {"val": "C0036658", "score": 1.0}, ["Sensory perception, function", "Sensation"], false], ["motor tone", "ENTITY", 643, 653, {"val": "C1513492", "score": 0.7866425514221191}, ["motor movement", "Motor"], false], ["Plain radiography", "ENTITY", 667, 684, {"val": "C1306645", "score": 1.0}, ["plain x-ray", "x-ray"], false], ["CT", "ENTITY", 689, 691, {"val": "C0009244", "score": 1.0}, ["Cognitive Therapies", "Therapies, Cognitive Behavior"], false], ["osteolytic lesion", "ENTITY", 702, 719, {"val": "C0302313", "score": 1.0}, ["Osteolytic lesion", "Osteolytic lesions"], false]]], "age": 10.0, "gender": "Male"} +{"id": "201526", "raw_text": "A 28 yo female G1P0A0 is admitted to the Ob/Gyn service for non-ruptured ectopic pregnancy. Past medical history is remarkable for obesity, a non-complicated appendectomy at age 8, infertility treatment for the past 3 years, and pelvic laparoscopy during which minor right Fallopian tube adhesions were cauterized. Her LMP was 8 weeks prior to admission. Beta HCG is 100 mIU. The attending physician usually treats unruptured ecoptic pregnancies laparoscopically but is concerned about the patient's obesity and history of adhesions.", "text_sents": ["A 28 yo female G1P0A0 is admitted to the Ob/Gyn service for non-ruptured ectopic pregnancy.", "Past medical history is remarkable for obesity, a non-complicated appendectomy at age 8, infertility treatment for the past 3 years, and pelvic laparoscopy during which minor right Fallopian tube adhesions were cauterized.", "Her LMP was 8 weeks prior to admission.", "Beta HCG is 100 mIU.", "The attending physician usually treats unruptured ecoptic pregnancies laparoscopically but is concerned about the patient's obesity and history of adhesions."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["female", "ENTITY", 8, 14, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["admitted", "ENTITY", 25, 33, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["Ob/Gyn", "ENTITY", 41, 47, {"val": "C0746963", "score": 1.0}, ["obstetrics and gynecology (field)", "ob gyn"], false], ["service", "ENTITY", 48, 55, {"val": "C0557854", "score": 1.0}, ["services", "service"], false], ["non-ruptured", "ENTITY", 60, 72, {"val": "C0445145", "score": 1.0}, ["Non-ruptured (qualifier value)", "Non-ruptured"], false], ["ectopic", "ENTITY", 73, 80, {"val": "C0574895", "score": 1.0}, ["Ectopic", "Ectopic (qualifier value)"], false], ["Past", "ENTITY", 92, 96, {"val": "C1444637", "score": 1.0}, ["In the past", "In the past (qualifier value)"], false], ["medical history", "ENTITY", 97, 112, {"val": "C0262926", "score": 1.0}, ["History of (contextual qualifier)", "personal history"], false], ["obesity", "ENTITY", 131, 138, {"val": "C0028754", "score": 1.0}, ["Adiposity", "obese"], false], ["non-complicated", "ENTITY", 142, 157, {"val": "C0231242", "score": 0.7370022535324097}, ["Complicated by", "complicated by"], false], ["appendectomy", "ENTITY", 158, 170, {"val": "C0003611", "score": 1.0}, ["appendicectomy", "Appendectomy"], false], ["age", "ENTITY", 174, 177, {"val": "C0001779", "score": 1.0}, ["Has age", "Chronological Age"], false], ["infertility", "ENTITY", 181, 192, {"val": "C0021359", "score": 1.0}, ["Cannot achieve a pregnancy", "INFERTILITY"], false], ["treatment", "ENTITY", 193, 202, {"val": "C0039798", "score": 1.0}, ["therapy", "treatment"], false], ["years", "ENTITY", 218, 223, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["pelvic laparoscopy", "ENTITY", 229, 247, {"val": "C0031150", "score": 0.8103232979774475}, ["Laparoscopy", "Coelioscopy"], false], ["Fallopian tube adhesions", "ENTITY", 273, 297, {"val": "C0015560", "score": 0.7778047323226929}, ["Oviduct", "Fallopian tubes"], false], ["cauterized", "ENTITY", 303, 313, {"val": "C0007471", "score": 1.0}, ["Cauterisation", "Cauterization - action (qualifier value)"], false], ["LMP", "ENTITY", 319, 322, {"val": "C0425932", "score": 0.9999999403953552}, ["Last menstrual period", "date of last menstrual period"], false], ["weeks", "ENTITY", 329, 334, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["admission", "ENTITY", 344, 353, {"val": "C0184666", "score": 1.0}, ["admissions hospital", "admissions"], false], ["Beta", "ENTITY", 355, 359, {"val": "C0330390", "score": 1.0}, ["Beta, NOS", "Beta (organism)"], false], ["HCG", "ENTITY", 360, 363, {"val": "C1141639", "score": 1.0}, ["human chorionic gonadotropin (HCG)", "Product containing human chorionic gonadotropin (medicinal product)"], false], ["attending", "ENTITY", 380, 389, {"val": "C1547429", "score": 1.0}, ["Attending"], false], ["physician", "ENTITY", 390, 399, {"val": "C0031831", "score": 1.0}, ["Physicians", "physician"], false], ["unruptured", "ENTITY", 415, 425, {"val": "C4053804", "score": 0.7151485085487366}, ["Luteinized Unruptured Follicle", "LUTEINIZED FOLLICLE"], false], ["patient's", "ENTITY", 490, 499, {"val": "C0030706", "score": 0.8831718564033508}, ["patient rights", "Patients' Right"], false], ["obesity", "ENTITY", 500, 507, {"val": "C0028754", "score": 1.0}, ["Adiposity", "obese"], false], ["history", "ENTITY", 512, 519, {"val": "C0019664", "score": 1.0}, ["history", "Histories"], false], ["adhesions", "ENTITY", 523, 532, {"val": "C0001511", "score": 0.9999998807907104}, ["Adhesion, Tissue", "Tissue Adhesions"], false]]], "age": 28.0, "gender": "Female"} +{"id": "201527", "raw_text": "A 15 yo girl accompanied by her mother is referred for evaluation by the school. The girl has more than expected absences in the last three month, appears to be constantly tired and sleepy in class. Her mother assures the girl is well fed, and getting the proper sleep at night but admits the girls tires easily when they go out on weekend hikes. Physical examination: BP: 90/60. HR 130/min the only remarkable findings are extremely pale skin and mucosae. Grade 3/6 systolic murmur. Lab tests report Hb: 4.2 g/dL, MCV 61.8 fL, serum iron < 1.8 umol/L and ferritin of 2 ng/mL. Fecal occult blood is negative.", "text_sents": ["A 15 yo girl accompanied by her mother is referred for evaluation by the school.", "The girl has more than expected absences in the last three month, appears to be constantly tired and sleepy in class.", "Her mother assures the girl is well fed, and getting the proper sleep at night but admits the girls tires easily when they go out on weekend hikes.", "Physical examination: BP: 90/60.", "HR 130/min the only remarkable findings are extremely pale skin and mucosae.", "Grade 3/6 systolic murmur.", "Lab tests report Hb: 4.2 g/dL, MCV 61.8 fL, serum iron < 1.8 umol/L and ferritin of 2 ng/mL. Fecal occult blood is negative."], "filtered_sents": null, "ent_sents": [[["yo", "ENTITY", 5, 7, {"val": "C1413296", "score": 0.9999998807907104}, ["cerebellar degeneration related protein 2", "Yo paraneoplastic antigen"], false], ["girl", "ENTITY", 8, 12, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["mother", "ENTITY", 32, 38, {"val": "C0026591", "score": 1.0}, ["mothers", "Maternal"], false], ["evaluation", "ENTITY", 55, 65, {"val": "C0220825", "score": 1.0}, ["efficacy assessment", "effectiveness assessment"], false], ["school", "ENTITY", 73, 79, {"val": "C0036375", "score": 0.9999999403953552}, ["educational institution", "environment school"], false], ["girl", "ENTITY", 85, 89, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["absences", "ENTITY", 113, 121, {"val": "C0424530", "score": 1.0}, ["absences", "Absences (finding)"], false], ["month", "ENTITY", 140, 145, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["sleepy", "ENTITY", 182, 188, {"val": "C0013144", "score": 1.0}, ["Mental status, drowsy", "Somnolent"], false], ["class", "ENTITY", 192, 197, {"val": "C0456387", "score": 1.0}, ["class", "Class"], false], ["mother", "ENTITY", 203, 209, {"val": "C0026591", "score": 1.0}, ["mothers", "Maternal"], false], ["girl", "ENTITY", 222, 226, {"val": "C0043210", "score": 1.0}, ["female humans", "Girl"], false], ["fed", "ENTITY", 235, 238, {"val": "C0342895", "score": 1.0}, ["LCATA DEFICIENCY", "Fish-eye disease"], false], ["sleep", "ENTITY", 263, 268, {"val": "C0037313", "score": 1.0}, ["Sleep", "Sleep, NOS"], false], ["night", "ENTITY", 272, 277, {"val": "C0240526", "score": 1.0}, ["Nocturnal", "nocte"], false], ["girls", "ENTITY", 293, 298, {"val": "C0043210", "score": 0.9999999403953552}, ["female humans", "Girl"], false], ["tires", "ENTITY", 299, 304, {"val": "C0475255", "score": 0.9999999403953552}, ["Tire", "tyre"], false], ["weekend", "ENTITY", 332, 339, {"val": "C0680190", "score": 1.0}, ["weekend", "weekends"], false], ["Physical examination", "ENTITY", 347, 367, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["BP", "ENTITY", 369, 371, {"val": "C0005823", "score": 1.0}, ["blood pressure", "Blood Pressure"], false], ["HR", "ENTITY", 380, 382, {"val": "C0010343", "score": 1.0}, ["CROATIA", "croatia"], false], ["findings", "ENTITY", 411, 419, {"val": "C2607943", "score": 1.0}, ["findings"], false], ["pale skin", "ENTITY", 434, 443, {"val": "C0030232", "score": 0.9999999403953552}, ["Loss of color", "Pale complexion"], false], ["mucosae", "ENTITY", 448, 455, {"val": "C0026724", "score": 0.7692777514457703}, ["MUCOSA", "Membranes, Mucous"], false], ["systolic murmur", "ENTITY", 467, 482, {"val": "C0232257", "score": 1.0}, ["Murmurs, Systolic", "Systolic murmur"], false], ["Lab tests report", "ENTITY", 484, 500, {"val": "C0022885", "score": 0.7928121089935303}, ["Laboratory procedure (procedure)", "Test"], false], ["Hb", "ENTITY", 501, 503, {"val": "C0019046", "score": 1.0}, ["Hemoglobin, NOS", "Hemoglobins"], false], ["MCV", "ENTITY", 515, 518, {"val": "C0026394", "score": 1.0}, ["MOLLUSCUM CONTAGIOSUM VIRUS", "Molluscum contagiosum virus (organism)"], false], ["fL", "ENTITY", 524, 526, {"val": "C0016253", "score": 1.0}, ["Florida", "FL"], false], ["serum iron", "ENTITY", 528, 538, {"val": "C1318312", "score": 1.0}, ["iron levels serum", "iron serum"], false], ["ferritin", "ENTITY", 556, 564, {"val": "C0015879", "score": 1.0}, ["Ferritins", "Ferritin"], false], ["Fecal occult blood", "ENTITY", 577, 595, {"val": "C0201811", "score": 0.9999999403953552}, ["guaiac testing", "Chemical test for occult blood, NOS"], false], ["negative", "ENTITY", 599, 607, {"val": "C0205160", "score": 0.9999999403953552}, ["out ruled", "negative"], false]]], "age": 15.0, "gender": "Female"} +{"id": "201528", "raw_text": "A previously healthy 8-year-old boy presents with a complaint of right lower extremity pain and fever. He reports limping for the past two days. The parents report no previous trauma, but do remember a tick bite during a summer visit to Maryland several months ago. They do not remember observing erythema migrans. On examination, the right knee is tender and swollen. Peripheral WBC count and SRP are slightly elevated.", "text_sents": ["A previously healthy 8-year-old boy presents with a complaint of right lower extremity pain and fever.", "He reports limping for the past two days.", "The parents report no previous trauma, but do remember a tick bite during a summer visit to Maryland several months ago.", "They do not remember observing erythema migrans.", "On examination, the right knee is tender and swollen.", "Peripheral WBC count and SRP are slightly elevated."], "filtered_sents": null, "ent_sents": [[["healthy", "ENTITY", 13, 20, {"val": "C3898900", "score": 1.0}, ["Healthy"], false], ["boy", "ENTITY", 32, 35, {"val": "C0870221", "score": 1.0}, ["Boy", "Male child"], false], ["complaint", "ENTITY", 52, 61, {"val": "C0277786", "score": 1.0}, ["Main Complain", "CC"], false], ["right lower extremity pain", "ENTITY", 65, 91, {"val": "C0023216", "score": 0.802665650844574}, ["Lower limb structure (body structure)", "hind limb"], false], ["fever", "ENTITY", 96, 101, {"val": "C0015967", "score": 1.0}, ["Body temperature above reference range (finding)", "Fever, unspecified"], false], ["reports", "ENTITY", 106, 113, {"val": "C0684224", "score": 1.0}, ["Reports", "Report (record artifact)"], false], ["days", "ENTITY", 139, 143, {"val": "C0439228", "score": 1.0}, ["days", "DAYS"], false], ["parents", "ENTITY", 149, 156, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["trauma", "ENTITY", 176, 182, {"val": "C0043251", "score": 0.9999999403953552}, ["Wounds and Injuries", "Wounds, Injury"], true], ["tick", "ENTITY", 202, 206, {"val": "C0040203", "score": 1.0}, ["ticks", "Ticks"], false], ["bite", "ENTITY", 207, 211, {"val": "C0005658", "score": 1.0}, ["bite", "Bite Injury"], false], ["summer", "ENTITY", 221, 227, {"val": "C0241301", "score": 1.0}, ["SUMMER", "summer"], false], ["visit", "ENTITY", 228, 233, {"val": "C0545082", "score": 0.9999999403953552}, ["Encounter", "Visits"], false], ["Maryland", "ENTITY", 237, 245, {"val": "C0024858", "score": 1.0}, ["Maryland (geographic location)", "MD"], false], ["months", "ENTITY", 254, 260, {"val": "C0439231", "score": 1.0}, ["Month", "mo"], false], ["erythema migrans", "ENTITY", 297, 313, {"val": "C0014740", "score": 1.0}, ["Erythema chronica migrans (disorder)", "Erythema Migrans"], true], ["examination", "ENTITY", 318, 329, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["right knee", "ENTITY", 335, 345, {"val": "C0230431", "score": 1.0}, ["Right knee", "knee right"], false], ["tender", "ENTITY", 349, 355, {"val": "C0234234", "score": 0.9999998807907104}, ["Tender (qualifier value)", "Tender"], false], ["swollen", "ENTITY", 360, 367, {"val": "C0038999", "score": 1.0}, ["swellings", "Tumescence"], false], ["Peripheral", "ENTITY", 369, 379, {"val": "C0205100", "score": 1.0}, ["Peripheral (qualifier value)", "PERIPHERAL"], false], ["WBC", "ENTITY", 380, 383, {"val": "C0023508", "score": 1.0}, ["White blood cell count - observation", "Leukocyte Number"], false], ["count", "ENTITY", 384, 389, {"val": "C0750480", "score": 1.0}, ["Count", "count"], false], ["SRP", "ENTITY", 394, 397, {"val": "C0074512", "score": 1.0}, ["Signal Recognition Particle", "Particle, Signal Recognition"], false], ["elevated", "ENTITY", 411, 419, {"val": "C0205250", "score": 1.0}, ["High", "Elevated"], false]]], "age": 8.0, "gender": "Male"} +{"id": "201529", "raw_text": "A 4-year-old girl presents with persistent fever for the past week. The parents report a spike at 104F. The parents brought the child to the emergency room when they noticed erythematous rash on the girl's trunk. Physical examination reveals strawberry red tongue, red and cracked lips, and swollen red hands. The whites of both eyes are red with no discharge.", "text_sents": ["A 4-year-old girl presents with persistent fever for the past week.", "The parents report a spike at 104F.", "The parents brought the child to the emergency room when they noticed erythematous rash on the girl's trunk.", "Physical examination reveals strawberry red tongue, red and cracked lips, and swollen red hands.", "The whites of both eyes are red with no discharge."], "filtered_sents": null, "ent_sents": [[["persistent fever", "ENTITY", 32, 48, {"val": "C0476474", "score": 1.0}, ["fevers persistent", "fever persistent"], false], ["week", "ENTITY", 62, 66, {"val": "C0439230", "score": 1.0}, ["week (qualifier value)", "weeks"], false], ["parents", "ENTITY", 72, 79, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["spike", "ENTITY", 89, 94, {"val": "C0241988", "score": 0.8529788851737976}, ["Paraprotein Present", "m-spike"], false], ["parents", "ENTITY", 108, 115, {"val": "C0030551", "score": 1.0}, ["Parents", "PARENT"], false], ["child", "ENTITY", 128, 133, {"val": "C0008059", "score": 1.0}, ["Children (0-21)", "0-11 years old"], false], ["emergency room", "ENTITY", 141, 155, {"val": "C0562508", "score": 1.0}, ["EMERGENCY ROOM", "emergency service hospital"], false], ["erythematous rash", "ENTITY", 174, 191, {"val": "C0234913", "score": 1.0}, ["erythematous rash", "Erythematous rash"], false], ["Physical examination", "ENTITY", 213, 233, {"val": "C0031809", "score": 1.0}, ["Physical Assessment", "examination procedure"], false], ["strawberry", "ENTITY", 242, 252, {"val": "C0457802", "score": 1.0}, ["strawberries", "Strawberries"], false], ["red tongue", "ENTITY", 253, 263, {"val": "C3672008", "score": 1.0}, ["Red tongue (finding)", "Tongue red"], false], ["red", "ENTITY", 265, 268, {"val": "C0332575", "score": 1.0}, ["Red colour", "Rubor"], false], ["cracked lips", "ENTITY", 273, 285, {"val": "C0424489", "score": 1.0}, ["cracking lips", "Chapping of lips"], false], ["swollen red hands", "ENTITY", 291, 308, {"val": "C3829901", "score": 0.8845503330230713}, ["My hands are swollen"], false], ["whites", "ENTITY", 314, 320, {"val": "C0007457", "score": 0.9999999403953552}, ["Caucasian Race", "caucasian"], false], ["eyes", "ENTITY", 329, 333, {"val": "C0015392", "score": 1.0}, ["Eyeball", "Eyeball structure"], false], ["red", "ENTITY", 338, 341, {"val": "C0332575", "score": 1.0}, ["Red colour", "Rubor"], false], ["no discharge", "ENTITY", 347, 359, {"val": "C0012621", "score": 0.9286236763000488}, ["Dx - Discharge", "drainages"], false]]], "age": 4.0, "gender": "Female"} +{"id": "201530", "raw_text": "A 47 year old male who fell on his outstretched left arm presents with pain and bruising on the inside and outside of the elbow, swelling, and inability to bend the arm. On the x-ray, the ulna has dislocated posteriorly from the trochlea of the humerus. The radius has dislocated from the capitulum of the humerus.", "text_sents": ["A 47 year old male who fell on his outstretched left arm presents with pain and bruising on the inside and outside of the elbow, swelling, and inability to bend the arm.", "On the x-ray, the ulna has dislocated posteriorly from the trochlea of the humerus.", "The radius has dislocated from the capitulum of the humerus."], "filtered_sents": null, "ent_sents": [[["year", "ENTITY", 5, 9, {"val": "C0439234", "score": 1.0}, ["a", "year"], false], ["male", "ENTITY", 14, 18, {"val": "C0086582", "score": 1.0}, ["sex male", "Male (finding)"], false], ["pain", "ENTITY", 71, 75, {"val": "C0030193", "score": 1.0}, ["painful", "PAIN"], false], ["bruising", "ENTITY", 80, 88, {"val": "C0009938", "score": 1.0}, ["Contusion (disorder)", "Bruises"], false], ["inside", "ENTITY", 96, 102, {"val": "C0205102", "score": 1.0}, ["internal", "Internal (qualifier value)"], false], ["elbow", "ENTITY", 122, 127, {"val": "C0013769", "score": 1.0}, ["Region of elbow", "Cubitus"], false], ["swelling", "ENTITY", 129, 137, {"val": "C0013604", "score": 0.9999999403953552}, ["dropsy", "Edematous"], false], ["bend", "ENTITY", 156, 160, {"val": "C0011119", "score": 1.0}, ["bends", "Bends (disorder)"], false], ["x-ray", "ENTITY", 177, 182, {"val": "C0034571", "score": 1.0}, ["X-ray image", "radiography"], false], ["ulna", "ENTITY", 188, 192, {"val": "C0041600", "score": 1.0}, ["BONE, ULNA", "ulna bone"], false], ["trochlea", "ENTITY", 229, 237, {"val": "C0009195", "score": 0.7579407095909119}, ["Cochleal", "Cochleas"], false], ["humerus", "ENTITY", 245, 252, {"val": "C0020164", "score": 0.9999999403953552}, ["Bone of arm, NOS", "Bone of arm"], false], ["radius", "ENTITY", 258, 264, {"val": "C0034627", "score": 1.0}, ["Radius", "radius bone"], false], ["dislocated", "ENTITY", 269, 279, {"val": "C0012691", "score": 1.0}, ["Joint luxation", "dislocations"], false], ["capitulum", "ENTITY", 289, 298, {"val": "C1009254", "score": 1.0}, ["capitulum"], false], ["humerus", "ENTITY", 306, 313, {"val": "C0020164", "score": 0.9999999403953552}, ["Bone of arm, NOS", "Bone of arm"], false]]], "age": 47.0, "gender": "Male"}