diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..8f8c77e6162bbae9085bed0f40f8c054f5bc49af
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.29559132465316407,0.013852659708719055
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4906b80d63603fb092ef95441666f5e8355d624f
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi_L2_L2.plus.all,AUPRC,0.23275268181786785,0.009559748217128688
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b20c8ac4b3b021966ab82105f2a7a4b30d08fca3
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.2796943294208497,0.01280867586372289
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..81e9c5a33e73b319e7fecf6026e467569e2c2acd
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.plus.RawScore.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.plus.RawScore,AUPRC,0.24294787829800676,0.009792412496402404
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fbe083966e459444b2be929ccc5c5b1d0e271683
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus.LogisticRegression.chrom.subset_from_all,AUPRC,0.15256012148813888,0.007166846213151921
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..da2af3587bc66168104ebe7c93db90eb1dae3f8e
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_Embeddings.minus.inner_product,AUPRC,0.11765008078757727,0.005824920378032796
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1981a6ce4e9399541051fd2d21d5ffdc4c087bb6
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_Embeddings.plus.euclidean_distance,AUPRC,0.1159462943896983,0.004035722821300837
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..90ec579065a81e37d71a436704a2f6f62b34e05b
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Enformer.LogisticRegression.chrom.subset_from_all,AUPRC,0.2988963648970225,0.010442049865644143
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..8fcafa68ae5b563bc770a9682fa6d8373db0b318
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+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Enformer_L2_L2.plus.all,AUPRC,0.2431331349040763,0.008129454744071037
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0902a620c35b756e072484cc874e660051026cfe
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA.LogisticRegression.chrom.subset_from_all,AUPRC,0.26679605772260073,0.011951241923386742
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..886e97c8ab05c4fc2ea2b389bedfb07141f07365
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+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA_LLR.minus.score,AUPRC,0.20396005418220764,0.009585673441497992
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ec07010aefc34c2b577932e5b4fdeb6ce075bb92
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+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA_absLLR.plus.score,AUPRC,0.2190269301338905,0.009248488256516512
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0e57f4d3bcd602a274e74febb5ceb05e0b6d283b
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.18512034146380163,0.0063586451771733745
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..5b346cd91cd608281811274cf271350efdc4b35d
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+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.1254714820363969,0.003866258765816274
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..40a608d924d722b682c945996ae832606b5cc0f2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_LLR.minus.score,AUPRC,0.11146838545985943,0.0035404534983329754
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..700a3c249af4229b483710e6203f2c817e771684
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_absLLR.plus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_absLLR.plus.score,AUPRC,0.11175519137916468,0.004791547240357025
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c5b8341293afb20a5d23bbd132d76e50d81c364c
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+HyenaDNA.LogisticRegression.chrom.subset_from_all,AUPRC,0.1338225825536506,0.007849069217830303
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..32b72a6cce5157ef5586e7e0db9677ea950ed9af
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+HyenaDNA_Embeddings.minus.inner_product,AUPRC,0.11780730202677744,0.00361350415273021
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..441312350605dfa1a7c2bd6f1f967a31cdac95a9
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer.LogisticRegression.chrom.subset_from_all,AUPRC,0.1671252991257899,0.005714415997469197
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a3f9323888ec11ba6c37b7a9dbd4aaec395ebad2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer_Embeddings.minus.inner_product,AUPRC,0.13962884776407092,0.0060074873985385925
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..7e65e677d7607e6a246863b84b1a1534f36882d9
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer_Embeddings.plus.euclidean_distance,AUPRC,0.12080908016483949,0.005304937236808229
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..02fe3893a9e1f0585f2cacd41ca05bf63fcaea19
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Sei.LogisticRegression.chrom.subset_from_all,AUPRC,0.18442580348100793,0.008897472647174097
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..04749949a0147fa5361584727bd794271171639a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Sei.plus.seqclass_max_absdiff,AUPRC,0.19354772197316122,0.00891518726937263
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d33d8a555bbcc35557f48a4b75ad2bfc64628725
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.2803536868893724,0.013136088878313855
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3e99740f499b399367ad1140d9114fe82cc19d21
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi_L2_L2.plus.all,AUPRC,0.213625677333782,0.00944146000892977
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..5c1215ba44525c02e0e1a5a17f7edc850cb525d9
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.3516297482188318,0.014942376462794305
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f56a7cbc65121d107e4d9e376703bfeb04f4f438
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.2831230622299395,0.012851154100654868
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..08279a7da9a5884b304a6ea3f5b0d7015c40fd49
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.plus.RawScore.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.plus.RawScore,AUPRC,0.24469830737537437,0.011060044331904755
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d6f8d111848a6d00d22d42632f2a56267cc9d66a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA.LogisticRegression.chrom.subset_from_all,AUPRC,0.2722273688594766,0.012976277232443165
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a47970a5d874302e652d587e788b5d3aa3c756d5
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA_absLLR.plus.score,AUPRC,0.2162495437957213,0.01013856327764111
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..afea61d43aaa65b5bf620a1217502af1ed6eb3a1
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.28869709838611923,0.04480409942237179
diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..195ee35cd982b986ffbc0aa4c12714fc888785d0
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6311920eaa6312bc528d3d06a50f96a653e8c659
--- /dev/null
+++ b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4f8de0bed7943c66830098f3b85d006fe245da82
--- /dev/null
+++ b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d5661a42ba372a013308c86b14e0895674626577
--- /dev/null
+++ b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..669e0c02bc6ca4ff12635bb215bf73993ce699f5
--- /dev/null
+++ b/mendelian_traits_v21_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..956b5103d79a5a181fbdde3a734934dd0ed5316f
--- /dev/null
+++ b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e68003a7f81a0f731237daecff6349fb7e7a2790
--- /dev/null
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@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..67b454ce442147fd7df9d007941baf2b7820c408
--- /dev/null
+++ b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9219f944317f23aaed166d4ace19f82ad5519b5c
--- /dev/null
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+model,metric,score,se
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..df46bb539590b5b852b4d67e014626e3da2ba9a5
--- /dev/null
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+model,metric,score,se
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diff --git a/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv b/mendelian_traits_v21_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b67667d559e132e575a46ebaf01bfccc54f2205e
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+model,metric,score,se
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new file mode 100644
index 0000000000000000000000000000000000000000..d9b5020b7b45df1aee7968b1922a661c05931018
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4104dbae86d5555ab2415f3395d576d09159dc59
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..385543fbe401ea7af8fda2a421d5f529e8407e88
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,11 @@
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..55947dc7acec4d91f6ef369487dc533884daf214
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..039e4574c3fa099d5cf56813e4df1112cf70fd37
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,11 @@
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b215680280c3823fcb70d9433f946e77e25f9675
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,11 @@
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..41c36e62ff62bff7ff3a2405e8b5f4671bac7b23
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..377167c0b1c78fbad4bc051cc24f8e9a6d4bd2cb
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f62ffc72e0758fde94973098a39aeac78b365453
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..26b743d23df5c3aa4116116122964262e86c0586
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.plus.RawScore,AUPRC,0.7939613526570046,0.08482597045946168
diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..21229838fd3bb50ebcb3d95ab51998400d1269be
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
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diff --git a/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..91d677ae7acc1511bdc0177505eec4969eabb0b2
--- /dev/null
+++ b/mendelian_traits_v22_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA_LLR.minus.score,AUPRC,0.7754568367989916,0.06887292925294672