diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..034b28fc165bc9148a7e5f11cda4a6871b7879fb
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Borzoi.LogisticRegression.chrom,0.689988888888889
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ae61ea1fd34e2bfe860035be23e96cbb31b73e9c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Borzoi_L2_L2.plus.all,0.6667222222222223
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..22db048fa910b7efbfe9b3d70ea1ad9bdc26a73c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,CADD+Borzoi.LogisticRegression.chrom,0.7443222222222223
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0d0a7269dd7031fe9223c11381d4b421b97663f5
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fb48ac68d99e8dff1890cae065c308ade720d8c9
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,CADD+GPN-MSA.LogisticRegression.chrom,0.6823000000000001
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/CADD.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b023324fe3343ffe612419b5cae6d9ce2d4e66b8
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,CADD.LogisticRegression.chrom,0.7009555555555556
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUROC_by_chrom/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..bdc81f048f43fe2db99db6881d0ca95e6c8009ca
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/CADD.plus.RawScore.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,CADD.plus.RawScore,0.5968222222222221
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..00f2b445fa2eccaaaf9bc86bfd0494b45c78535f
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Caduceus.LogisticRegression.chrom,0.5896333333333333
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..60a97c9b095ae324c6ff69ef497f9808ab9e6a68
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Caduceus_Embeddings.minus.inner_product,0.45768888888888887
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..37732ded685815632b4afcc03717608b1d74bdfd
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Caduceus_Embeddings.plus.cosine_distance,0.4836888888888889
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..36fc679f9b10ef124d8a54c731f65cf675a6fce5
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Caduceus_Embeddings.plus.euclidean_distance,0.49143333333333333
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a8364c99c6eb44b03467eb5006eb4851c35a69ad
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_LLR.minus.score.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d2076e25bab1388db02678184dc92f5ecde91a00
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Enformer.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c462e6257fe3e1548b632de23304454a5455ca03
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Enformer_L2_L2.plus.all.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Enformer_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9e8b6ac612bc1f330503155697ecef2ee80b3a7d
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Enformer_L2_L2.plus.all.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..91832e583c34a1d3ba2539135373e5f9859db766
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6065aa0340d7a285004600977e18646dcdd7049a
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..7aedb3b883047c1a207a87d21d3f28b360371b52
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1ef4fdfa2a233c45d67d7dbb6168bf7e51f75370
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..90a39975fdc1dc07dddd006b8fe88a602dca5df6
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..94f729d381df664a5e4a8beda34beb7819f87896
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b5ca294d3ae8bd6f0e0281e13e250f44ebe37652
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..5f92a127cdeb6ca6a6714de561b874b459bf2de2
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1589dc98f95f4b22658c281dcb92279a5bca58fe
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..756eb5e132cf9022432e43ce224494f17085399d
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f2be1977b1ee7c1ef8cedea99df3b29722c5e3e8
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ba0763a95f4ebf2873fbd12b01ba655fc93ba7a5
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a1597034858d6b915fbf9d9c074dc3ae75a355f7
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fb6295518fbf8088046a632af98c48eacd6d636c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..25dd730d315a71eb4e315c8c7a3dd059f01fbab3
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..12af4e717617a84fe6e178a8e1324ec8e428bb8c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ddb565cc973ca689584cef4ddba3c1232e46b3f4
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9a2d94c62326e1eec5b4ba868872abf14601f625
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fbbb0e763ff0c3713a08bee21f759f5517ce10d1
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c87d65bf3a356edae6f3d96c320a9526be698905
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..01a9c05b1bf484dc366117bc44ff98f318fac044
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..514091761a089e99aacec8d99d84a3ed2252c1a9
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..bb3840784c94e13d664bac8e9bf26217560ebd07
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fd6f1db9416b9c61ffefec2839118d1ee2a0c2ec
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fbd635b1848fba7fdcc1dae91091dabeb961bb26
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
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+22,280,NucleotideTransformer_absLLR.plus.score,0.528061224489796
diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Sei.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Sei.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d1861915fb060cd7489084900d0e7f5247d96455
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Sei.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Sei.LogisticRegression.chrom,0.5585444444444445
+2,900,Sei.LogisticRegression.chrom,0.6113305898491084
+3,650,Sei.LogisticRegression.chrom,0.5719658119658121
+4,400,Sei.LogisticRegression.chrom,0.5467361111111111
+5,510,Sei.LogisticRegression.chrom,0.5606817890554914
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+21,140,Sei.LogisticRegression.chrom,0.6354875283446713
+22,280,Sei.LogisticRegression.chrom,0.6067176870748299
diff --git a/complex_traits_matched_9/AUROC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv b/complex_traits_matched_9/AUROC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a8b15f0259269bf26561f956f7ff060c5d2157ab
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUROC
+1,1000,Sei.plus.seqclass_max_absdiff,0.6051555555555556
+2,900,Sei.plus.seqclass_max_absdiff,0.5945816186556927
+3,650,Sei.plus.seqclass_max_absdiff,0.5818540433925048
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+22,280,Sei.plus.seqclass_max_absdiff,0.6461167800453514
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b0b54d39cd66e64b549dc0792cbc7c9a18e5e4df
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi.LogisticRegression.chrom,AUROC,0.6861624983961824,0.009593431157750161
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2bf4ef86dfe89a36dd486cb06ea4a50b4c075e95
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi_L2_L2.plus.all,AUROC,0.645880928239982,0.008231606575369437
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c0712e52b5c4afe1c97eb6bf49089367b893a3db
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD+Borzoi.LogisticRegression.chrom,AUROC,0.7226995279168825,0.010224592694300134
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..06e9d1e936afc14f146891c24d5cc49796928262
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD+GPN-MSA.LogisticRegression.chrom,AUROC,0.6976000941721767,0.010087737626696949
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..212cbe9adda3c9caac9ec3e3e5537059abb82e29
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.LogisticRegression.chrom,AUROC,0.6958667741245484,0.009657502013736632
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3f5f911f9666edd99c78be85e23ba49b9999497d
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+CADD.plus.RawScore,AUROC,0.6155839016156137,0.009337989689475558
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..50bba861921dd7b2d9b1b747ce01263f654b3d04
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus.LogisticRegression.chrom,AUROC,0.5829148475724354,0.010898684546777792
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..8ac6267b0b9426c723489cab87fc22db384f5271
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_Embeddings.minus.inner_product,AUROC,0.49232748217222705,0.014326535148337637
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a8f8ba1b3e421072de2c8b4364aa131b7de54242
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_Embeddings.plus.cosine_distance,AUROC,0.5276235682973383,0.009195143479384474
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b650db6732e8f6ff91d6fa54204df72c1c57cb26
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_LLR.minus.score,AUROC,0.48195224198853714,0.007996942747962246
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..509fdc921afdc12e22b6a232dfb3a20a0046aad7
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_absLLR.plus.score,AUROC,0.46722475930921264,0.007008130711439128
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Enformer.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Enformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1d6d236b4e4ab8842ea8fa7d4ae3a681fdcb641f
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Enformer.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Enformer.LogisticRegression.chrom,AUROC,0.6952776877999348,0.007464066308545734
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..35a5588fe23e6afaf267a38f2e81be0b0a8d0c4c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA+Borzoi.LogisticRegression.chrom,AUROC,0.7095897502479747,0.009751162739905233
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..12f07a802a7a192c5a2ab19d42261f08740d723c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA_LLR.minus.score,AUROC,0.5803355323336867,0.0093336009565065
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b58bdf22719c41c960f3540dd72cd782ee2425ed
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final.LogisticRegression.chrom,AUROC,0.6196578874142741,0.007200672287223774
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2e61cab8c859424cb4185dd137dad10a5455f253
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.minus.inner_product.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_Embeddings.minus.inner_product,AUROC,0.5416091760376021,0.00828014746744229
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..144b6841d692d2e33fd301754907c30f468d2ce9
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_Embeddings.plus.cosine_distance,AUROC,0.5513470724328501,0.005725446590476668
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b349e06d26d19e4bf896ceab29cf0edf96404595
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_Embeddings.plus.euclidean_distance,AUROC,0.5379363234325385,0.008561218542844345
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2e252f41d4de0a40ba443aabf9db9bcca4c6491c
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_absLLR.plus.score,AUROC,0.4910205455265397,0.009313246759302037
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..957527cd524ffae7f886b58f9245ca99ad389de0
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+HyenaDNA_Embeddings.plus.cosine_distance,AUROC,0.46852992248650777,0.014313705402497998
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..bfa699d1e53ce2b6ad4a57a0ad391661ed4632fb
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+HyenaDNA_LLR.minus.score,AUROC,0.4919076291252983,0.008637139229442039
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..239d799f0323e0d025dc2627d77f67c9f0101bff
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer.LogisticRegression.chrom,AUROC,0.5973908154989352,0.006765651747900954
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6e7b5e10cefd2c3b536f4ae4247259e1a2e4c8aa
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer_Embeddings.plus.cosine_distance,AUROC,0.5423843872812787,0.010442394718686918
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6a437faf4d86eaf4748d61337b410ff96f4f6701
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer_Embeddings.plus.euclidean_distance,AUROC,0.5392272442396537,0.01041130700166125
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_LLR.minus.score.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d0adf456b81c45aae5e272e7eabfab45e75f1183
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/NucleotideTransformer_LLR.minus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+NucleotideTransformer_LLR.minus.score,AUROC,0.483916371464194,0.00863784777240837
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c2569cec562569e88c24852581a0bac82ec9da85
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Sei.LogisticRegression.chrom,AUROC,0.5979529136625931,0.009024954256600418
diff --git a/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..80ac5e6fd30d9d76b7239a9a6ed62ee3a1d17996
--- /dev/null
+++ b/complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Sei.plus.seqclass_max_absdiff,AUROC,0.6088605785468374,0.008057360931663211
diff --git a/complex_traits_matched_9/preds/eGFRcys/Borzoi.LogisticRegression.chrom.subset_from_all.parquet b/complex_traits_matched_9/preds/eGFRcys/Borzoi.LogisticRegression.chrom.subset_from_all.parquet
new file mode 100644
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diff --git a/complex_traits_matched_9/unsupervised_metrics/DVT/Borzoi_L2.csv b/complex_traits_matched_9/unsupervised_metrics/DVT/Borzoi_L2.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ae4901f5aca1d17b7d7f6ca267eba19ef1b3bf64
--- /dev/null
+++ b/complex_traits_matched_9/unsupervised_metrics/DVT/Borzoi_L2.csv
@@ -0,0 +1,7612 @@
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diff --git a/complex_traits_matched_9/unsupervised_metrics/HbA1c/Borzoi_L2.csv b/complex_traits_matched_9/unsupervised_metrics/HbA1c/Borzoi_L2.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f88d9f86a23eeb0147cc6e444aa5d8146b0c2e91
--- /dev/null
+++ b/complex_traits_matched_9/unsupervised_metrics/HbA1c/Borzoi_L2.csv
@@ -0,0 +1,7612 @@
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diff --git a/complex_traits_matched_9/unsupervised_metrics/Height/Borzoi_L2.csv b/complex_traits_matched_9/unsupervised_metrics/Height/Borzoi_L2.csv
new file mode 100644
index 0000000000000000000000000000000000000000..31ebaef9e98a9df6a1d75ba9d65c66593cb05354
--- /dev/null
+++ b/complex_traits_matched_9/unsupervised_metrics/Height/Borzoi_L2.csv
@@ -0,0 +1,7612 @@
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diff --git a/complex_traits_matched_9/unsupervised_metrics/Mono/Borzoi_L2.csv b/complex_traits_matched_9/unsupervised_metrics/Mono/Borzoi_L2.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0df14bf833caa54edcd3fdb71b04d37e7531fea6
--- /dev/null
+++ b/complex_traits_matched_9/unsupervised_metrics/Mono/Borzoi_L2.csv
@@ -0,0 +1,7612 @@
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diff --git a/complex_traits_matched_9/unsupervised_metrics/all/CADD.csv b/complex_traits_matched_9/unsupervised_metrics/all/CADD.csv
new file mode 100644
index 0000000000000000000000000000000000000000..acfe8d8a493195cf8f660349060cc9696034bc08
--- /dev/null
+++ b/complex_traits_matched_9/unsupervised_metrics/all/CADD.csv
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diff --git a/mendelian_traits_matched_9/features/GPN-MSA_Embeddings.parquet b/mendelian_traits_matched_9/features/GPN-MSA_Embeddings.parquet
new file mode 100644
index 0000000000000000000000000000000000000000..47e4e752ebad0f0f27bd10ac3c2fe62a33452621
--- /dev/null
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