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songlab
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TraitGym

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Tags:
dna
variant-effect-prediction
biology
genomics
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  1. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv +2 -0
  2. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final_LLR.minus.score.csv +2 -0
  3. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv +2 -0
  4. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv +2 -0
  5. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.euclidean_distance.csv +2 -0
  6. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_InnerProduct.minus.score.csv +2 -0
  7. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv +2 -0
  8. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv +2 -0
  9. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv +2 -0
  10. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv +2 -0
  11. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.minus.inner_product.csv +2 -0
  12. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
  13. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_EuclideanDistance.plus.score.csv +2 -0
  14. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_absLLR.plus.score.csv +2 -0
  15. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer.LogisticRegression.chrom.csv +2 -0
  16. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv +2 -0
  17. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_LLR.minus.score.csv +2 -0
  18. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Sei.LogisticRegression.chrom.csv +2 -0
  19. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv +2 -0
  20. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
  21. mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv +2 -0
  22. mendelian_traits_matched_9/cadd_tabix_res.tsv.gz +3 -0
  23. mendelian_traits_matched_9/features/Borzoi_L2_L2.parquet +3 -0
  24. mendelian_traits_matched_9/features/CADD.parquet +3 -0
  25. mendelian_traits_matched_9/features/Caduceus_InnerProduct.parquet +3 -0
  26. mendelian_traits_matched_9/features/Caduceus_LLR.parquet +3 -0
  27. mendelian_traits_matched_9/features/Caduceus_absLLR.parquet +3 -0
  28. mendelian_traits_matched_9/features/Enformer_L2_L2.parquet +3 -0
  29. mendelian_traits_matched_9/features/GPN-MSA_EuclideanDistance.parquet +3 -0
  30. mendelian_traits_matched_9/features/GPN-MSA_Influence.parquet +3 -0
  31. mendelian_traits_matched_9/features/GPN-MSA_InnerProduct.parquet +3 -0
  32. mendelian_traits_matched_9/features/GPN-MSA_LLR.parquet +3 -0
  33. mendelian_traits_matched_9/features/GPN-MSA_absLLR.parquet +3 -0
  34. mendelian_traits_matched_9/features/GPN_final_EuclideanDistance.parquet +3 -0
  35. mendelian_traits_matched_9/features/GPN_final_EuclideanDistance2.parquet +3 -0
  36. mendelian_traits_matched_9/features/GPN_final_InnerProduct.parquet +3 -0
  37. mendelian_traits_matched_9/features/GPN_final_LLR.parquet +3 -0
  38. mendelian_traits_matched_9/features/GPN_final_absLLR.parquet +3 -0
  39. mendelian_traits_matched_9/features/HyenaDNA_InnerProduct.parquet +3 -0
  40. mendelian_traits_matched_9/features/HyenaDNA_LLR.parquet +3 -0
  41. mendelian_traits_matched_9/features/HyenaDNA_absLLR.parquet +3 -0
  42. mendelian_traits_matched_9/features/NucleotideTransformer_InnerProduct.parquet +3 -0
  43. mendelian_traits_matched_9/features/NucleotideTransformer_LLR.parquet +3 -0
  44. mendelian_traits_matched_9/features/NucleotideTransformer_absLLR.parquet +3 -0
  45. mendelian_traits_matched_9/features/Sei.parquet +3 -0
  46. mendelian_traits_matched_9/features/s_het.parquet +3 -0
  47. mendelian_traits_matched_9/preds/210710/Borzoi.LogisticRegression.chrom.subset_from_all.parquet +3 -0
  48. mendelian_traits_matched_9/preds/210710/Borzoi_L2_L2.plus.all.parquet +3 -0
  49. mendelian_traits_matched_9/preds/210710/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.parquet +3 -0
  50. mendelian_traits_matched_9/preds/210710/CADD+GPN-MSA_LLR+Borzoi_L2_L2.LogisticRegression.chrom.subset_from_all.parquet +3 -0
mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv ADDED
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