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- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/3_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.cosine_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.cosine_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_LLR.minus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.cosine_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_LLR.minus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Sei.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/CADD.plus.RawScore.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/GPN-MSA_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/CADD.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/CADD.plus.RawScore.csv +2 -0
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.33924872339341483,0.0444733192358589
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/3_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.18433646651759525,0.017928124552418954
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.4395599535999261,0.05380283156222357
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.3404024645325654,0.05640926277236658
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
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model,metric,score,se
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Borzoi_L2_L2.plus.all,AUPRC,0.23573926726474892,0.009154607334170136
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv
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model,metric,score,se
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CADD+Borzoi.LogisticRegression.chrom,AUPRC,0.35092677289119495,0.0163444581544798
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv
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model,metric,score,se
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CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,AUPRC,0.3622728888299734,0.015452234996450652
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
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model,metric,score,se
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CADD+GPN-MSA.LogisticRegression.chrom,AUPRC,0.29701888555476474,0.011590379617788582
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
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model,metric,score,se
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CADD.LogisticRegression.chrom,AUPRC,0.28385782717694175,0.012406150330154912
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
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model,metric,score,se
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CADD.plus.RawScore,AUPRC,0.2498996585166739,0.01018346234907977
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv
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model,metric,score,se
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Caduceus.LogisticRegression.chrom,AUPRC,0.15083726653345056,0.006712807881266443
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv
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model,metric,score,se
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Caduceus_Embeddings.minus.inner_product,AUPRC,0.1166763284027333,0.006248675945733252
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv
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model,metric,score,se
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Caduceus_Embeddings.plus.cosine_distance,AUPRC,0.11508210886232617,0.0037614076427251136
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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Caduceus_Embeddings.plus.euclidean_distance,AUPRC,0.11471607257495706,0.00366295980291948
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv
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model,metric,score,se
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Caduceus_absLLR.plus.score,AUPRC,0.09711829001270603,0.0019689455982978867
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer.LogisticRegression.chrom.csv
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model,metric,score,se
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Enformer.LogisticRegression.chrom,AUPRC,0.3033492001739871,0.010447115262766551
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv
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model,metric,score,se
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Enformer_L2_L2.plus.all,AUPRC,0.24511512368846733,0.007670187349607077
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
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model,metric,score,se
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GPN-MSA+Borzoi.LogisticRegression.chrom,AUPRC,0.3490988360867728,0.015400374037865963
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
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model,metric,score,se
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GPN-MSA_Embeddings.plus.cosine_distance,AUPRC,0.1502259491720072,0.006509975333568417
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN-MSA_Embeddings.plus.euclidean_distance,AUPRC,0.15015695805990462,0.006486413285701392
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv
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model,metric,score,se
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GPN_final.LogisticRegression.chrom,AUPRC,0.18661581771121488,0.006975242598920125
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.minus.inner_product.csv
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model,metric,score,se
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GPN_final_Embeddings.minus.inner_product,AUPRC,0.12461032464745404,0.004275678902205255
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.cosine_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.cosine_distance,AUPRC,0.1264796772201944,0.0032990277975720786
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.1262525274469381,0.004143301655304254
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_LLR.minus.score.csv
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model,metric,score,se
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GPN_final_LLR.minus.score,AUPRC,0.11230218708957003,0.0033147983223675037
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv
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model,metric,score,se
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GPN_final_absLLR.plus.score,AUPRC,0.10968354807737159,0.0040631421967596585
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA.LogisticRegression.chrom.csv
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model,metric,score,se
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HyenaDNA.LogisticRegression.chrom,AUPRC,0.13594825574081834,0.008321382896394669
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.minus.inner_product.csv
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model,metric,score,se
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HyenaDNA_Embeddings.minus.inner_product,AUPRC,0.11774625504666325,0.0036304953769477873
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
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model,metric,score,se
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HyenaDNA_Embeddings.plus.cosine_distance,AUPRC,0.10170875106777187,0.0044921068972726555
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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HyenaDNA_Embeddings.plus.euclidean_distance,AUPRC,0.1020957444724755,0.004940904895408146
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_LLR.minus.score.csv
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model,metric,score,se
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HyenaDNA_LLR.minus.score,AUPRC,0.10973381948130938,0.0035782191303181245
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/HyenaDNA_absLLR.plus.score.csv
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model,metric,score,se
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HyenaDNA_absLLR.plus.score,AUPRC,0.11080021947300088,0.0031081532373923868
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer.LogisticRegression.chrom.csv
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model,metric,score,se
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NucleotideTransformer.LogisticRegression.chrom,AUPRC,0.16341363999262687,0.005949108361581677
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
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model,metric,score,se
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NucleotideTransformer_Embeddings.minus.inner_product,AUPRC,0.1355220489796844,0.005529310857421164
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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NucleotideTransformer_Embeddings.plus.euclidean_distance,AUPRC,0.11785137900617842,0.0045872494379115515
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_absLLR.plus.score.csv
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model,metric,score,se
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NucleotideTransformer_absLLR.plus.score,AUPRC,0.09998334169066296,0.0024842120702113545
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Sei.LogisticRegression.chrom.csv
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model,metric,score,se
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Sei.LogisticRegression.chrom,AUPRC,0.18388241302672442,0.008017256843127056
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv
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model,metric,score,se
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Sei.plus.seqclass_max_absdiff,AUPRC,0.19275370621510468,0.007876738607038055
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.3309753712002602,0.017462068489983714
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/Borzoi_L2_L2.plus.all.csv
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model,metric,score,se
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Borzoi_L2_L2.plus.all,AUPRC,0.27170738433291886,0.012833167365485053
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
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1 |
+
model,metric,score,se
|
2 |
+
CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.39783255859756755,0.015988870673441465
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
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1 |
+
model,metric,score,se
|
2 |
+
CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.2969391377441304,0.012849196760084896
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/CADD.plus.RawScore.csv
ADDED
@@ -0,0 +1,2 @@
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1 |
+
model,metric,score,se
|
2 |
+
CADD.plus.RawScore,AUPRC,0.26052001682152987,0.01073956689579046
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
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1 |
+
model,metric,score,se
|
2 |
+
GPN-MSA.LogisticRegression.chrom.subset_from_all,AUPRC,0.2919774394982532,0.010262528439097801
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.99/GPN-MSA_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,2 @@
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1 |
+
model,metric,score,se
|
2 |
+
GPN-MSA_absLLR.plus.score,AUPRC,0.2342954640470266,0.008993975038840306
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/Borzoi.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
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|
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1 |
+
model,metric,score,se
|
2 |
+
Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.36275223632210274,0.020205593724846004
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/Borzoi_L2_L2.plus.all.csv
ADDED
@@ -0,0 +1,2 @@
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|
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1 |
+
model,metric,score,se
|
2 |
+
Borzoi_L2_L2.plus.all,AUPRC,0.30105267586237067,0.016865345958712016
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
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|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.4284361799244739,0.019761228683610084
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/CADD.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
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|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.319982992184278,0.0159823703761322
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pip_0.999/CADD.plus.RawScore.csv
ADDED
@@ -0,0 +1,2 @@
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|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD.plus.RawScore,AUPRC,0.283859985785189,0.010994409205064833
|