Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -136,6 +136,12 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         if self.config.name == 'Length of Stay' and self.config_path is None : self.config_path = _CONFIG_URLS['los'] 
         if self.config.name == 'Mortality' and self.config_path is None : self.config_path = _CONFIG_URLS['mortality']
 
+        version = self.mimic_path.split('/')[-1]
+        dir = self.mimic_path.replace('/mimic-iv/'+version,'')
+        os.chdir(dir)
+        print('0 : '+os.getcwd())
+
+
         #clone git repo if doesnt exists
         repo_url='https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'
         if os.path.exists('MIMIC-IV-Data-Pipeline-main'):
@@ -147,16 +153,15 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         os.chdir(path_bench)
         print('1 : '+ os.getcwd())
         
-        version = self.mimic_path.split('/')[-1]
+        
         #move data to mimic-iv folder
-        if not os.path.exists(path_bench+'/mimic-iv'):
-            os.makedirs(path_bench+'/mimic-iv')
-            
-            os.chdir(self.mimic_path.replace(version,''))
-            print('2 : '+os.getcwd())
-            shutil.move('/'+version, path_bench+'/mimic-iv/'+version)
-        self.mimic_path = path_bench+'/mimic-iv/'+version
-        os.chdir(path_bench)
+        #if not os.path.exists(path_bench+'/mimic-iv'):
+            #os.makedirs(path_bench+'/mimic-iv')
+            #os.chdir(self.mimic_path.replace(version,''))
+            #print('2 : '+os.getcwd())
+            #shutil.move('/'+version, path_bench+'/mimic-iv/'+version)
+        self.mimic_path = './mimic-iv/'+version
+        #os.chdir(path_bench)
         print('3 : '+os.getcwd())
 
         #download config file if not custom